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Sed0019945 (gene) of Chayote v1 genome

Gene IDSed0019945
OrganismSechium edule (Chayote v1)
DescriptionCharged multivesicular body protein 1
Genome locationLG06:45728959..45729369
RNA-Seq ExpressionSed0019945
SyntenySed0019945
Gene Ontology termsGO:0007034 - vacuolar transport (biological process)
GO:0016192 - vesicle-mediated transport (biological process)
GO:0005768 - endosome (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8651298.1 hypothetical protein Csa_002473 [Cucumis sativus]4.0e-4258.51Show/hide
Query:  MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAILKHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVK
        MGN EKLL+QIMELKFT +SLQR+A+ CE +EKSEKLK+KKA+ KGN DGA IYAENAI K TEQMNYLRL+S       RLDT AKMS I KSMGSIVK
Subjt:  MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAILKHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVK

Query:  SLESTLATGSLKKM---------------------------------------------ADDYGLEVSVGLPQAAGHVVPARETEKFD
        SLESTLATG+L+KM                                             ADDYGLEVSVGLPQ A H VPARETEK D
Subjt:  SLESTLATGSLKKM---------------------------------------------ADDYGLEVSVGLPQAAGHVVPARETEKFD

XP_004146833.1 ESCRT-related protein CHMP1B [Cucumis sativus]4.0e-4258.51Show/hide
Query:  MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAILKHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVK
        MGN EKLL+QIMELKFT +SLQR+A+ CE +EKSEKLK+KKA+ KGN DGA IYAENAI K TEQMNYLRL+S       RLDT AKMS I KSMGSIVK
Subjt:  MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAILKHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVK

Query:  SLESTLATGSLKKM---------------------------------------------ADDYGLEVSVGLPQAAGHVVPARETEKFD
        SLESTLATG+L+KM                                             ADDYGLEVSVGLPQ A H VPARETEK D
Subjt:  SLESTLATGSLKKM---------------------------------------------ADDYGLEVSVGLPQAAGHVVPARETEKFD

XP_022148096.1 ESCRT-related protein CHMP1B-like isoform X1 [Momordica charantia]5.2e-4258.51Show/hide
Query:  MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAILKHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVK
        MGN EKLL+QIMELKFT +SLQR+A+ CE +EKSEKLK+KKA+ KGN DGA IYAENAI K TEQMNYLRLAS       RLDT AKMS I KSMGSIVK
Subjt:  MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAILKHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVK

Query:  SLESTLATGSLKKM---------------------------------------------ADDYGLEVSVGLPQAAGHVVPARETEKFD
        SLESTLATG+L+KM                                             ADDYGLEVSVGLPQ A H VP RETEK D
Subjt:  SLESTLATGSLKKM---------------------------------------------ADDYGLEVSVGLPQAAGHVVPARETEKFD

XP_022949550.1 ESCRT-related protein CHMP1B-like [Cucurbita moschata]2.3e-4258.51Show/hide
Query:  MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAILKHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVK
        MGN EKLL+QIMELKFT +SLQR+A+ CE +EKSEKLK+KKA+ KGN DGA IYAENAI K TEQMNYLRLAS       RLDT AKMS I K+MGSIVK
Subjt:  MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAILKHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVK

Query:  SLESTLATGSLKKM---------------------------------------------ADDYGLEVSVGLPQAAGHVVPARETEKFD
        SLESTLATG+L+KM                                             ADDYGLEVSVGLPQ AGH VP RETEK D
Subjt:  SLESTLATGSLKKM---------------------------------------------ADDYGLEVSVGLPQAAGHVVPARETEKFD

XP_038878614.1 ESCRT-related protein CHMP1B-like [Benincasa hispida]4.0e-4258.51Show/hide
Query:  MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAILKHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVK
        MGN EKLL+QIMELKFT +SLQR+A+ CE +EKSEKLK+KKA+ KGN DGA IYAENAI K TEQMNYLRLAS       RLDT AKMS I KSMGSIVK
Subjt:  MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAILKHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVK

Query:  SLESTLATGSLKKM---------------------------------------------ADDYGLEVSVGLPQAAGHVVPARETEKFD
        SLE+TLATG+L+KM                                             ADDYGLEVSVGLPQ A H VPARETEK D
Subjt:  SLESTLATGSLKKM---------------------------------------------ADDYGLEVSVGLPQAAGHVVPARETEKFD

TrEMBL top hitse value%identityAlignment
A0A0A0LIG8 Uncharacterized protein1.9e-4258.51Show/hide
Query:  MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAILKHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVK
        MGN EKLL+QIMELKFT +SLQR+A+ CE +EKSEKLK+KKA+ KGN DGA IYAENAI K TEQMNYLRL+S       RLDT AKMS I KSMGSIVK
Subjt:  MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAILKHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVK

Query:  SLESTLATGSLKKM---------------------------------------------ADDYGLEVSVGLPQAAGHVVPARETEKFD
        SLESTLATG+L+KM                                             ADDYGLEVSVGLPQ A H VPARETEK D
Subjt:  SLESTLATGSLKKM---------------------------------------------ADDYGLEVSVGLPQAAGHVVPARETEKFD

A0A1S3BIE8 ESCRT-related protein CHMP1B-like1.9e-4258.51Show/hide
Query:  MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAILKHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVK
        MGN EKLL+QIMELKFT +SLQR+A+ CE +EKSEKLK+KKA+ KGN DGA IYAENAI K TEQMNYLRL+S       RLDT AKMS I KSMGSIVK
Subjt:  MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAILKHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVK

Query:  SLESTLATGSLKKM---------------------------------------------ADDYGLEVSVGLPQAAGHVVPARETEKFD
        SLESTLATG+L+KM                                             ADDYGLEVSVGLPQ A H VPARETEK D
Subjt:  SLESTLATGSLKKM---------------------------------------------ADDYGLEVSVGLPQAAGHVVPARETEKFD

A0A5A7V1A1 ESCRT-related protein CHMP1B1.9e-4258.51Show/hide
Query:  MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAILKHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVK
        MGN EKLL+QIMELKFT +SLQR+A+ CE +EKSEKLK+KKA+ KGN DGA IYAENAI K TEQMNYLRL+S       RLDT AKMS I KSMGSIVK
Subjt:  MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAILKHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVK

Query:  SLESTLATGSLKKM---------------------------------------------ADDYGLEVSVGLPQAAGHVVPARETEKFD
        SLESTLATG+L+KM                                             ADDYGLEVSVGLPQ A H VPARETEK D
Subjt:  SLESTLATGSLKKM---------------------------------------------ADDYGLEVSVGLPQAAGHVVPARETEKFD

A0A6J1GD16 ESCRT-related protein CHMP1B-like1.1e-4258.51Show/hide
Query:  MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAILKHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVK
        MGN EKLL+QIMELKFT +SLQR+A+ CE +EKSEKLK+KKA+ KGN DGA IYAENAI K TEQMNYLRLAS       RLDT AKMS I K+MGSIVK
Subjt:  MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAILKHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVK

Query:  SLESTLATGSLKKM---------------------------------------------ADDYGLEVSVGLPQAAGHVVPARETEKFD
        SLESTLATG+L+KM                                             ADDYGLEVSVGLPQ AGH VP RETEK D
Subjt:  SLESTLATGSLKKM---------------------------------------------ADDYGLEVSVGLPQAAGHVVPARETEKFD

A0A6J1KC50 ESCRT-related protein CHMP1B-like1.1e-4258.51Show/hide
Query:  MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAILKHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVK
        MGN EKLL+QIMELKFT +SLQR+A+ CE +EKSEKLK+KKA+ KGN DGA IYAENAI K TEQMNYLRLAS       RLDT AKMS I K+MGSIVK
Subjt:  MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAILKHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVK

Query:  SLESTLATGSLKKM---------------------------------------------ADDYGLEVSVGLPQAAGHVVPARETEKFD
        SLESTLATG+L+KM                                             ADDYGLEVSVGLPQ AGH VP RETEK D
Subjt:  SLESTLATGSLKKM---------------------------------------------ADDYGLEVSVGLPQAAGHVVPARETEKFD

SwissProt top hitse value%identityAlignment
O96552 Charged multivesicular body protein 12.7e-1744.34Show/hide
Query:  SQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAILKHTEQMNYLRLASRLDTLA-------KMSLIRKSMGSIVKSLESTLAT
        +Q+ +LKFT++ L++++K  E  EK++K+KLKKA+ +GN DGA IYA+NAI +  + +NYLRLASR+D +A       +M  +  SM +IVKS+E ++  
Subjt:  SQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAILKHTEQMNYLRLASRLDTLA-------KMSLIRKSMGSIVKSLESTLAT

Query:  GSLKKM
          L+K+
Subjt:  GSLKKM

Q84VG1 ESCRT-related protein CHMP11.8e-3751.87Show/hide
Query:  MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAILKHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVK
        MGN EKL++QI +LKFT++SLQR+A+ CE +EK +KLK+KKA+ KGN DGA IYAENAI K TE MNYLRLAS       RLDT AKM +I KSM +IVK
Subjt:  MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAILKHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVK

Query:  SLESTLATGSLKKM---------------------------------------------ADDYGLEVSVGLPQAAGHVVP-ARETEK
        SL+S LATG+L+KM                                             ADDYGLEVSVGLPQAA H +P A+E EK
Subjt:  SLESTLATGSLKKM---------------------------------------------ADDYGLEVSVGLPQAAGHVVP-ARETEK

Q8LE58 ESCRT-related protein CHMP1A3.6e-3850.53Show/hide
Query:  MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAILKHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVK
        MGN +KL++QI ELKFT++SLQR+A+ CE +E+SEKLK+KKA+ KGN DGA IYAENAI K +EQMNYLRL+S       RLDT AKM+ I KSM +IVK
Subjt:  MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAILKHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVK

Query:  SLESTLATGSLKKM---------------------------------------------ADDYGLEVSVGLPQAAGHVVPARETEKFD
        SLES+L TG+L+KM                                             ADDYGLEVSVGLPQ AGH +P +  EK +
Subjt:  SLESTLATGSLKKM---------------------------------------------ADDYGLEVSVGLPQAAGHVVPARETEKFD

Q9CQD4 Charged multivesicular body protein 1b-23.0e-1641.74Show/hide
Query:  MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAILKHTEQMNYLRLASRLDTLA-------KMSLIRKSMGSIVK
        M N EK    +  LKF  + L R AK C+ +EK+EK K+KKA+ KGNT+ A I+AENAI +  + +N+LR+++R+D +A        M  + KSM  +VK
Subjt:  MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAILKHTEQMNYLRLASRLDTLA-------KMSLIRKSMGSIVK

Query:  SLESTLATGSLKKMA
        S+++TL + +L+K++
Subjt:  SLESTLATGSLKKMA

Q9SSM4 ESCRT-related protein CHMP1B9.5e-3951.06Show/hide
Query:  MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAILKHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVK
        MGN +KL++QI +LKFT++SLQR+++ CE +EK+EKLK+KKA+ KGN DGA IYAENAI K +EQMNYLRLAS       RLDT AKM+ I KSM +IVK
Subjt:  MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAILKHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVK

Query:  SLESTLATGSLKKM---------------------------------------------ADDYGLEVSVGLPQAAGHVVPARETEKFD
        SLES+LATG+L+KM                                             ADDYGLEVSVGLPQ AGH +P +  EK D
Subjt:  SLESTLATGSLKKM---------------------------------------------ADDYGLEVSVGLPQAAGHVVPARETEKFD

Arabidopsis top hitse value%identityAlignment
AT1G17730.1 vacuolar protein sorting 46.12.6e-3950.53Show/hide
Query:  MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAILKHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVK
        MGN +KL++QI ELKFT++SLQR+A+ CE +E+SEKLK+KKA+ KGN DGA IYAENAI K +EQMNYLRL+S       RLDT AKM+ I KSM +IVK
Subjt:  MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAILKHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVK

Query:  SLESTLATGSLKKM---------------------------------------------ADDYGLEVSVGLPQAAGHVVPARETEKFD
        SLES+L TG+L+KM                                             ADDYGLEVSVGLPQ AGH +P +  EK +
Subjt:  SLESTLATGSLKKM---------------------------------------------ADDYGLEVSVGLPQAAGHVVPARETEKFD

AT1G73030.1 SNF7 family protein6.7e-4051.06Show/hide
Query:  MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAILKHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVK
        MGN +KL++QI +LKFT++SLQR+++ CE +EK+EKLK+KKA+ KGN DGA IYAENAI K +EQMNYLRLAS       RLDT AKM+ I KSM +IVK
Subjt:  MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAILKHTEQMNYLRLAS-------RLDTLAKMSLIRKSMGSIVK

Query:  SLESTLATGSLKKM---------------------------------------------ADDYGLEVSVGLPQAAGHVVPARETEKFD
        SLES+LATG+L+KM                                             ADDYGLEVSVGLPQ AGH +P +  EK D
Subjt:  SLESTLATGSLKKM---------------------------------------------ADDYGLEVSVGLPQAAGHVVPARETEKFD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCAACGCGGAGAAATTGTTGAGCCAGATAATGGAATTGAAGTTCACCACAAGATCCTTGCAACGCCGAGCGAAGAACTGCGAGAACGATGAGAAATCCGAGAAGCT
CAAACTCAAGAAGGCCTTGGCGAAAGGAAACACGGACGGAGCATGGATCTACGCCGAGAACGCCATCCTGAAGCATACAGAGCAGATGAACTATCTCCGACTAGCGTCCC
GGCTCGATACGCTGGCAAAGATGTCCCTGATCAGAAAGTCCATGGGCTCGATCGTGAAATCTTTGGAAAGTACATTGGCGACTGGTAGTTTGAAGAAGATGGCTGATGAC
TATGGATTGGAGGTTTCTGTTGGTCTTCCACAGGCAGCGGGTCACGTCGTTCCCGCCCGGGAGACCGAGAAATTCGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGCAACGCGGAGAAATTGTTGAGCCAGATAATGGAATTGAAGTTCACCACAAGATCCTTGCAACGCCGAGCGAAGAACTGCGAGAACGATGAGAAATCCGAGAAGCT
CAAACTCAAGAAGGCCTTGGCGAAAGGAAACACGGACGGAGCATGGATCTACGCCGAGAACGCCATCCTGAAGCATACAGAGCAGATGAACTATCTCCGACTAGCGTCCC
GGCTCGATACGCTGGCAAAGATGTCCCTGATCAGAAAGTCCATGGGCTCGATCGTGAAATCTTTGGAAAGTACATTGGCGACTGGTAGTTTGAAGAAGATGGCTGATGAC
TATGGATTGGAGGTTTCTGTTGGTCTTCCACAGGCAGCGGGTCACGTCGTTCCCGCCCGGGAGACCGAGAAATTCGACTAG
Protein sequenceShow/hide protein sequence
MGNAEKLLSQIMELKFTTRSLQRRAKNCENDEKSEKLKLKKALAKGNTDGAWIYAENAILKHTEQMNYLRLASRLDTLAKMSLIRKSMGSIVKSLESTLATGSLKKMADD
YGLEVSVGLPQAAGHVVPARETEKFD