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Sed0019997 (gene) of Chayote v1 genome

Gene IDSed0019997
OrganismSechium edule (Chayote v1)
DescriptionPhotosystem I assembly protein Ycf3
Genome locationLG13:18481374..18482499
RNA-Seq ExpressionSed0019997
SyntenySed0019997
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR001440 - Tetratricopeptide repeat 1
IPR011990 - Tetratricopeptide-like helical domain superfamily
IPR019734 - Tetratricopeptide repeat


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG5222305.1 photosystem assembly related protein [Salix suchowensis]5.6e-6594.57Show/hide
Query:  EGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALERNPFLPQAFNNMAVICHYVNLPAYSDRGEQAIRQGDSEIAEAWFNQA
        +GNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT NGEHTKAL+YYFRALERNPFLPQAFNNMAVICHYV+L AYSDRGEQAIRQGDSEIAEAWFNQA
Subjt:  EGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALERNPFLPQAFNNMAVICHYVNLPAYSDRGEQAIRQGDSEIAEAWFNQA

Query:  AEYWKQAIALTPANYIEAQNWLKITRRFK
        AEYWKQAIALTP NYIEAQNWLKITRRF+
Subjt:  AEYWKQAIALTPANYIEAQNWLKITRRFK

YP_009566565.1 hypothetical chloroplast RF3 [Balanocarpus heimii]9.5e-6593.28Show/hide
Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALERNPFLPQAFNNMAVICHYVNLPAYSDRGEQAIRQGDSEIAEA
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT NGEHTKAL+YYFRALERNPFLPQAFNNMAVICHY    AYSDRGEQAIRQGDSEIAEA
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALERNPFLPQAFNNMAVICHYVNLPAYSDRGEQAIRQGDSEIAEA

Query:  WFNQAAEYWKQAIALTPANYIEAQNWLKITRRFK
        WF+QAAEYWKQAIALTP NYIEAQNWLKITRRF+
Subjt:  WFNQAAEYWKQAIALTPANYIEAQNWLKITRRFK

YP_009750678.1 hypothetical chloroplast RF3 [Dipterocarpus turbinatus]9.5e-6593.28Show/hide
Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALERNPFLPQAFNNMAVICHYVNLPAYSDRGEQAIRQGDSEIAEA
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT NGEHTKAL+YYFRALERNPFLPQAFNNMAVICHY    AYSDRGEQAIRQGDSEIAEA
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALERNPFLPQAFNNMAVICHYVNLPAYSDRGEQAIRQGDSEIAEA

Query:  WFNQAAEYWKQAIALTPANYIEAQNWLKITRRFK
        WF+QAAEYWKQAIALTP NYIEAQNWLKITRRF+
Subjt:  WFNQAAEYWKQAIALTPANYIEAQNWLKITRRFK

YP_010035291.1 photosystem I assembly protein Ycf4 [Terminalia neotaliala]8.6e-6693.98Show/hide
Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALERNPFLPQAFNNMAVICHYVNLPAYSDRGEQAIRQGDSEIAEA
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT NGEHTKAL+YYFRALERNPFLPQAFNNMAVICHYV    YSDRGEQAIRQGDSEIAEA
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALERNPFLPQAFNNMAVICHYVNLPAYSDRGEQAIRQGDSEIAEA

Query:  WFNQAAEYWKQAIALTPANYIEAQNWLKITRRF
        WF+QAAEYWKQAIALTP NYIEAQNWLKITRRF
Subjt:  WFNQAAEYWKQAIALTPANYIEAQNWLKITRRF

YP_010045065.1 hypothetical chloroplast RF3 [Wrightia laevis]8.6e-6693.33Show/hide
Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALERNPFLPQAFNNMAVICHYVNL-PAYSDRGEQAIRQGDSEIAE
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT NGEHTKAL+YYFRALERNPFLPQAFNNMAVICHYV L P YSDRGEQAIRQGDSEIAE
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALERNPFLPQAFNNMAVICHYVNL-PAYSDRGEQAIRQGDSEIAE

Query:  AWFNQAAEYWKQAIALTPANYIEAQNWLKITRRFK
        AWF+QAAEYWKQAIALTP NYIEA NWLKITRRF+
Subjt:  AWFNQAAEYWKQAIALTPANYIEAQNWLKITRRFK

TrEMBL top hitse value%identityAlignment
A0A411GXN2 Photosystem I assembly protein Ycf34.6e-6593.28Show/hide
Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALERNPFLPQAFNNMAVICHYVNLPAYSDRGEQAIRQGDSEIAEA
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT NGEHTKAL+YYFRALERNPFLPQAFNNMAVICHY    AYSDRGEQAIRQGDSEIAEA
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALERNPFLPQAFNNMAVICHYVNLPAYSDRGEQAIRQGDSEIAEA

Query:  WFNQAAEYWKQAIALTPANYIEAQNWLKITRRFK
        WF+QAAEYWKQAIALTP NYIEAQNWLKITRRF+
Subjt:  WFNQAAEYWKQAIALTPANYIEAQNWLKITRRFK

A0A6G7S8P3 Photosystem I assembly protein Ycf34.6e-6593.28Show/hide
Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALERNPFLPQAFNNMAVICHYVNLPAYSDRGEQAIRQGDSEIAEA
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT NGEHTKAL+YYFRALERNPFLPQAFNNMAVICHY    AYSDRGEQAIRQGDSEIAEA
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALERNPFLPQAFNNMAVICHYVNLPAYSDRGEQAIRQGDSEIAEA

Query:  WFNQAAEYWKQAIALTPANYIEAQNWLKITRRFK
        WF+QAAEYWKQAIALTP NYIEAQNWLKITRRF+
Subjt:  WFNQAAEYWKQAIALTPANYIEAQNWLKITRRFK

A0A6H0ER18 Photosystem I assembly protein Ycf37.9e-6594.03Show/hide
Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALERNPFLPQAFNNMAVICHYVNLPAYSDRGEQAIRQGDSEIAEA
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALERNPFLPQAFNNMAVICHY        RGEQAIRQGDSEIAEA
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALERNPFLPQAFNNMAVICHYVNLPAYSDRGEQAIRQGDSEIAEA

Query:  WFNQAAEYWKQAIALTPANYIEAQNWLKITRRFK
        WFNQAAEYWKQAIALTPANYIEAQNWLKITRRFK
Subjt:  WFNQAAEYWKQAIALTPANYIEAQNWLKITRRFK

A0A7N2N7U5 Uncharacterized protein2.1e-6588.11Show/hide
Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALERNPFLPQAFNNMAVICHYV---------NLPAYSDRGEQAIR
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKAL+YYFRALERNPFLPQAFNNMAVICHY          N PAYSDRGEQAIR
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALERNPFLPQAFNNMAVICHYV---------NLPAYSDRGEQAIR

Query:  QGDSEIAEAWFNQAAEYWKQAIALTPANYIEAQNWLKITRRFK
        QG+SEIAEAWF+QAAEYWKQAI LTP NYIEAQNWLKITRRF+
Subjt:  QGDSEIAEAWFNQAAEYWKQAIALTPANYIEAQNWLKITRRFK

A0A7S9H3N8 Hypothetical chloroplast RF34.2e-6693.33Show/hide
Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALERNPFLPQAFNNMAVICHYVNL-PAYSDRGEQAIRQGDSEIAE
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT NGEHTKAL+YYFRALERNPFLPQAFNNMAVICHYV L P YSDRGEQAIRQGDSEIAE
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALERNPFLPQAFNNMAVICHYVNL-PAYSDRGEQAIRQGDSEIAE

Query:  AWFNQAAEYWKQAIALTPANYIEAQNWLKITRRFK
        AWF+QAAEYWKQAIALTP NYIEA NWLKITRRF+
Subjt:  AWFNQAAEYWKQAIALTPANYIEAQNWLKITRRFK

SwissProt top hitse value%identityAlignment
A0ZZ36 Photosystem I assembly protein Ycf39.9e-6590.3Show/hide
Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALERNPFLPQAFNNMAVICHYVNLPAYSDRGEQAIRQGDSEIAEA
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT NGEHTKAL+YYFRALERNPFLPQAFNNMAVICHY        RGEQAIRQGDSEIAEA
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALERNPFLPQAFNNMAVICHYVNLPAYSDRGEQAIRQGDSEIAEA

Query:  WFNQAAEYWKQAIALTPANYIEAQNWLKITRRFK
        WF+QAAEYWKQAIALTP NYIEAQNWLKITRRF+
Subjt:  WFNQAAEYWKQAIALTPANYIEAQNWLKITRRFK

Q2L906 Photosystem I assembly protein Ycf39.9e-6590.3Show/hide
Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALERNPFLPQAFNNMAVICHYVNLPAYSDRGEQAIRQGDSEIAEA
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT NGEHTKAL+YYFRALERNPFLPQAFNNMAVICHY        RGEQAIRQGDSEIAEA
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALERNPFLPQAFNNMAVICHYVNLPAYSDRGEQAIRQGDSEIAEA

Query:  WFNQAAEYWKQAIALTPANYIEAQNWLKITRRFK
        WF+QAAEYWKQAIALTP NYIEAQNWLKITRRF+
Subjt:  WFNQAAEYWKQAIALTPANYIEAQNWLKITRRFK

Q49KZ7 Photosystem I assembly protein Ycf39.9e-6590.3Show/hide
Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALERNPFLPQAFNNMAVICHYVNLPAYSDRGEQAIRQGDSEIAEA
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT NGEHTKAL+YYFRALERNPFLPQAFNNMAVICHY        RGEQAIRQGDSEIAEA
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALERNPFLPQAFNNMAVICHYVNLPAYSDRGEQAIRQGDSEIAEA

Query:  WFNQAAEYWKQAIALTPANYIEAQNWLKITRRFK
        WF+QAAEYWKQAIALTP NYIEAQNWLKITRRF+
Subjt:  WFNQAAEYWKQAIALTPANYIEAQNWLKITRRFK

Q4VZH4 Photosystem I assembly protein Ycf31.8e-6692.54Show/hide
Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALERNPFLPQAFNNMAVICHYVNLPAYSDRGEQAIRQGDSEIAEA
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKAL+YYFRALERNPFLPQAFNNMAVICHY        RGEQAIRQGDSEIAEA
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALERNPFLPQAFNNMAVICHYVNLPAYSDRGEQAIRQGDSEIAEA

Query:  WFNQAAEYWKQAIALTPANYIEAQNWLKITRRFK
        WFNQAAEYWKQAIALTP NYIEAQNWLKITRRFK
Subjt:  WFNQAAEYWKQAIALTPANYIEAQNWLKITRRFK

Q9MTP0 Photosystem I assembly protein Ycf39.9e-6590.3Show/hide
Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALERNPFLPQAFNNMAVICHYVNLPAYSDRGEQAIRQGDSEIAEA
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT NGEHTKAL+YYFRALERNPFLPQAFNNMAVICHY        RGEQAIRQGDSEIAEA
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALERNPFLPQAFNNMAVICHYVNLPAYSDRGEQAIRQGDSEIAEA

Query:  WFNQAAEYWKQAIALTPANYIEAQNWLKITRRFK
        WF+QAAEYWKQAIALTP NYIEAQNWLKITRRF+
Subjt:  WFNQAAEYWKQAIALTPANYIEAQNWLKITRRFK

Arabidopsis top hitse value%identityAlignment
AT3G11540.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.8e-0535.63Show/hide
Query:  SAQSEGNYAEALQNYYEAMRLEIDP-YDRSYILYNIGLIHTRNGEHTKALKYYFRALERNPFLPQAFNNMAVICHYVNLPAYSDRGE
        S +  GN  E +Q YYEA  L+IDP Y  +Y  YN+G++++   ++  AL  Y +A    P   +A+ NM VI        Y +RG+
Subjt:  SAQSEGNYAEALQNYYEAMRLEIDP-YDRSYILYNIGLIHTRNGEHTKALKYYFRALERNPFLPQAFNNMAVICHYVNLPAYSDRGE

AT3G11540.2 Tetratricopeptide repeat (TPR)-like superfamily protein3.4e-0437.14Show/hide
Query:  SAQSEGNYAEALQNYYEAMRLEIDP-YDRSYILYNIGLIHTRNGEHTKALKYYFRALERNPFLPQAFNNM
        S +  GN  E +Q YYEA  L+IDP Y  +Y  YN+G++++   ++  AL  Y +A    P   +A+ NM
Subjt:  SAQSEGNYAEALQNYYEAMRLEIDP-YDRSYILYNIGLIHTRNGEHTKALKYYFRALERNPFLPQAFNNM

ATCG00360.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.5e-6387.31Show/hide
Query:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALERNPFLPQAFNNMAVICHYVNLPAYSDRGEQAIRQGDSEIAEA
        MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT NGEHTKAL+YYFRALERNPFLPQAFNNMAVICHY        RGEQAI+QGDSE+AEA
Subjt:  MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALERNPFLPQAFNNMAVICHYVNLPAYSDRGEQAIRQGDSEIAEA

Query:  WFNQAAEYWKQAIALTPANYIEAQNWLKITRRFK
        WF QAAEYWKQAI LTP NYIEAQNWL ITRRF+
Subjt:  WFNQAAEYWKQAIALTPANYIEAQNWLKITRRFK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGCTCAATCCGAAGGAAATTATGCGGAAGCTCTACAGAATTATTATGAAGCTATGCGACTAGAAATCGATCCCTATGATCGAAGTTATATACTCTATAACATAGG
TCTTATCCACACAAGGAACGGAGAACATACGAAAGCTTTGAAATATTATTTTCGGGCACTAGAACGAAACCCGTTCTTACCACAAGCTTTTAATAATATGGCTGTGATCT
GTCATTACGTGAATTTACCTGCCTATTCCGACCGGGGAGAACAGGCCATTCGACAGGGAGATTCTGAAATTGCGGAGGCTTGGTTCAATCAAGCCGCTGAGTATTGGAAA
CAAGCTATAGCACTTACTCCCGCTAATTATATTGAAGCACAAAATTGGTTGAAGATCACAAGGCGCTTCAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGCTCAATCCGAAGGAAATTATGCGGAAGCTCTACAGAATTATTATGAAGCTATGCGACTAGAAATCGATCCCTATGATCGAAGTTATATACTCTATAACATAGG
TCTTATCCACACAAGGAACGGAGAACATACGAAAGCTTTGAAATATTATTTTCGGGCACTAGAACGAAACCCGTTCTTACCACAAGCTTTTAATAATATGGCTGTGATCT
GTCATTACGTGAATTTACCTGCCTATTCCGACCGGGGAGAACAGGCCATTCGACAGGGAGATTCTGAAATTGCGGAGGCTTGGTTCAATCAAGCCGCTGAGTATTGGAAA
CAAGCTATAGCACTTACTCCCGCTAATTATATTGAAGCACAAAATTGGTTGAAGATCACAAGGCGCTTCAAATAA
Protein sequenceShow/hide protein sequence
MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALKYYFRALERNPFLPQAFNNMAVICHYVNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWK
QAIALTPANYIEAQNWLKITRRFK