CuGenDBv2

Gene ID	Sed0020023
Organism	Sechium edule (Chayote v1)
Description	classical arabinogalactan protein 1-like
Genome location	LG06:8175383..8176084
RNA-Seq Expression	Sed0020023
Synteny	Sed0020023
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component) GO:0031225 - anchored component of membrane (cellular component)
InterPro domains	IPR044959 - Classical arabinogalactan protein

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7030900.1 hypothetical protein SDJN02_04937, partial [Cucurbita argyrosperma subsp. argyrosperma]

5.2e-24

71.55

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Query:  MAIRSLVAMILAAMLIGTSIAQSPAPSP--SPSLSPSRSPSLSPSVKSPESSPAAAPTPTSMKSPPSPPAA--------SPSSISSPPADAPAPSGNGAA
        MAIR  V M++ AMLI ++IAQSP+ SP  SP+ SPS++PS+SPSV+SP+SSPAAAPTP S+KSPPSPPAA        SPSSISSPPADAPAPSGN AA
Subjt:  MAIRSLVAMILAAMLIGTSIAQSPAPSP--SPSLSPSRSPSLSPSVKSPESSPAAAPTPTSMKSPPSPPAA--------SPSSISSPPADAPAPSGNGAA

Query:  SISFSLFGSVAVVLYA
        SISFS+FGSVA VLYA
Subjt:  SISFSLFGSVAVVLYA

XP_022922765.1 classical arabinogalactan protein 1-like [Cucurbita moschata]

9.8e-23

75.22

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Query:  MAIRSLVAMILAAMLIGTSIAQSPAPSP--SPSLSPSRSPSLSPSVKSPESSPAAAPTPTSMKSPPSPPAASPSSISSPPADAPAPSGNGAASISFSLFG
        MAIRS V MIL A+LIG++IAQSPA SP  SP  SPS++PS SPSVKSP+SSP AAPTP S  S    PAASPSSISSPPADAPAPSG+GAASISFS+FG
Subjt:  MAIRSLVAMILAAMLIGTSIAQSPAPSP--SPSLSPSRSPSLSPSVKSPESSPAAAPTPTSMKSPPSPPAASPSSISSPPADAPAPSGNGAASISFSLFG

Query:  SVAVVLYAAVLIM
        SVAVVLYA VL++
Subjt:  SVAVVLYAAVLIM

XP_022942993.1 classical arabinogalactan protein 1-like [Cucurbita moschata]

4.0e-24

70.25

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Query:  MAIRSLVAMILAAMLIGTSIAQSPAPSP--SPSLSPSRSPSLSPSVKSPESSPAAAPTPTSMKSPPSPPAA--------SPSSISSPPADAPAPSGNGAA
        MAIR  V M+  AMLI ++IAQSP+ SP  SP+ SPS++PS+SPSV+SP+SSPAAAPTP S+KSPPSPPAA        SPSSISSPPADAPAPSGN AA
Subjt:  MAIRSLVAMILAAMLIGTSIAQSPAPSP--SPSLSPSRSPSLSPSVKSPESSPAAAPTPTSMKSPPSPPAA--------SPSSISSPPADAPAPSGNGAA

Query:  SISFSLFGSVAVVLYAAVLIM
        SISFS+FGSVA VLYA VL++
Subjt:  SISFSLFGSVAVVLYAAVLIM

XP_023542663.1 classical arabinogalactan protein 1-like [Cucurbita pepo subsp. pepo]

4.4e-23

67.48

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Query:  MAIRSLVAMILAAMLIGTSIAQSPAPSP--SPSLSPSRSPSLSPSVKSPESSPAAAPTPTSMKSPPSPPAA----------SPSSISSPPADAPAPSGNG
        MAIR  V M++ AMLI ++IAQSP+ SP  SP+ SPS++PS+SPSV+SP+SSPAAAPTP S++SPPSPPAA          SPSSISSPPADAPAPSGN 
Subjt:  MAIRSLVAMILAAMLIGTSIAQSPAPSP--SPSLSPSRSPSLSPSVKSPESSPAAAPTPTSMKSPPSPPAA----------SPSSISSPPADAPAPSGNG

Query:  AASISFSLFGSVAVVLYAAVLIM
        AASIS S+FGSVA VLYA VL++
Subjt:  AASISFSLFGSVAVVLYAAVLIM

XP_038877310.1 classical arabinogalactan protein 1 [Benincasa hispida]

2.2e-27

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Query:  MAIRSLVAMILAAMLIGTSIAQSPAPSPSPSLSPSRSPSLSPSVKSPESSPAAAPTPTSMKSPPSP--------------PAASPSSISSPPADAPAPSG
        MAIRS VAMIL A+LIG++IAQSP  SPSPS SPS++PS SPSVKSP+SSPAAAPTP+S+KSPPSP              PA SPS ISSPPADAPAPSG
Subjt:  MAIRSLVAMILAAMLIGTSIAQSPAPSPSPSLSPSRSPSLSPSVKSPESSPAAAPTPTSMKSPPSP--------------PAASPSSISSPPADAPAPSG

Query:  NGAASISFSLFGSVAVVLYAAVLIM
        NGAASISFS+FGSVAVVLY  VL++
Subjt:  NGAASISFSLFGSVAVVLYAAVLIM

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KZB8 Uncharacterized protein

3.4e-21

65.29

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Query:  MAIRSLVAMILAAMLIGTSIAQSPAPSPSPSLSPSRSPSLSPSVKSPESSPAAAPTPTSMKSPPSP----------PAASPSSISSPPADAPAPSGNGAA
        MAI SLVA+I  +  I ++ AQSPA   SPSLSP++SPS +PS  SP+SSPA APTP+S+KSPPSP          PA+SP+SISSPPADAPAPSGNGAA
Subjt:  MAIRSLVAMILAAMLIGTSIAQSPAPSPSPSLSPSRSPSLSPSVKSPESSPAAAPTPTSMKSPPSP----------PAASPSSISSPPADAPAPSGNGAA

Query:  SISFSLFGSVAVVLYAAVLIM
        SI+FS+FGSVAV LYA VL++
Subjt:  SISFSLFGSVAVVLYAAVLIM

A0A6J1E9Q3 classical arabinogalactan protein 1-like

4.7e-23

75.22

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Query:  MAIRSLVAMILAAMLIGTSIAQSPAPSP--SPSLSPSRSPSLSPSVKSPESSPAAAPTPTSMKSPPSPPAASPSSISSPPADAPAPSGNGAASISFSLFG
        MAIRS V MIL A+LIG++IAQSPA SP  SP  SPS++PS SPSVKSP+SSP AAPTP S  S    PAASPSSISSPPADAPAPSG+GAASISFS+FG
Subjt:  MAIRSLVAMILAAMLIGTSIAQSPAPSP--SPSLSPSRSPSLSPSVKSPESSPAAAPTPTSMKSPPSPPAASPSSISSPPADAPAPSGNGAASISFSLFG

Query:  SVAVVLYAAVLIM
        SVAVVLYA VL++
Subjt:  SVAVVLYAAVLIM

A0A6J1FW49 classical arabinogalactan protein 1-like

1.9e-24

70.25

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Query:  MAIRSLVAMILAAMLIGTSIAQSPAPSP--SPSLSPSRSPSLSPSVKSPESSPAAAPTPTSMKSPPSPPAA--------SPSSISSPPADAPAPSGNGAA
        MAIR  V M+  AMLI ++IAQSP+ SP  SP+ SPS++PS+SPSV+SP+SSPAAAPTP S+KSPPSPPAA        SPSSISSPPADAPAPSGN AA
Subjt:  MAIRSLVAMILAAMLIGTSIAQSPAPSP--SPSLSPSRSPSLSPSVKSPESSPAAAPTPTSMKSPPSPPAA--------SPSSISSPPADAPAPSGNGAA

Query:  SISFSLFGSVAVVLYAAVLIM
        SISFS+FGSVA VLYA VL++
Subjt:  SISFSLFGSVAVVLYAAVLIM

A0A6J1J6X2 classical arabinogalactan protein 1-like

6.2e-23

75.22

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Query:  MAIRSLVAMILAAMLIGTSIAQSPAPSP--SPSLSPSRSPSLSPSVKSPESSPAAAPTPTSMKSPPSPPAASPSSISSPPADAPAPSGNGAASISFSLFG
        MAIRS V MIL A+LIG++IAQSPA SP  SP  SPS++P  SPSVKSP+SSP AAPTP S  S    PAASPSSISSPPADAPAPSGNGAASISFS+FG
Subjt:  MAIRSLVAMILAAMLIGTSIAQSPAPSP--SPSLSPSRSPSLSPSVKSPESSPAAAPTPTSMKSPPSPPAASPSSISSPPADAPAPSGNGAASISFSLFG

Query:  SVAVVLYAAVLIM
        SVAVVLYA VL++
Subjt:  SVAVVLYAAVLIM

A0A6J1JSK4 classical arabinogalactan protein 1-like

1.4e-22

67.77

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Query:  MAIRSLVAMILAAMLIGTSIAQSPAPSP--SPSLSPSRSPSLSPSVKSPESSPAAAPTPTSMKSPPSPPAA--------SPSSISSPPADAPAPSGNGAA
        MA R  V M+  AMLI ++IAQSP+ SP  SP+ SPS++PS+SPSV+SP+SSPAAAPTPTS+KSPPSPPAA        SPSSISSPPADAPAPSGN AA
Subjt:  MAIRSLVAMILAAMLIGTSIAQSPAPSP--SPSLSPSRSPSLSPSVKSPESSPAAAPTPTSMKSPPSPPAA--------SPSSISSPPADAPAPSGNGAA

Query:  SISFSLFGSVAVVLYAAVLIM
        SIS S+FGSVA VL+A V ++
Subjt:  SISFSLFGSVAVVLYAAVLIM

SwissProt top hits

e value

%identity

Alignment

Q8LCN5 Classical arabinogalactan protein 1

1.5e-10

49.22

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Query:  RSLVAMILAAMLIGTSIAQSPAPSP--------SPSLSPSR--SPSLSPSVKSPESSPAAAPTPTSMKSPPSP----------PAASPSSISSPPADAPA
        +SLV ++LAA+LI +++AQSPAP+P        SP+ SP +  +P+ +P V SP  SPAAA TP S  SPPSP          PA SPS+IS  P +AP 
Subjt:  RSLVAMILAAMLIGTSIAQSPAPSP--------SPSLSPSR--SPSLSPSVKSPESSPAAAPTPTSMKSPPSP----------PAASPSSISSPPADAPA

Query:  PSGNGAASISFSLFGSVAVVLYAAVLIM
        P+  GA S  F+ FGSVAV+L AAVL++
Subjt:  PSGNGAASISFSLFGSVAVVLYAAVLIM

Arabidopsis top hits

e value

%identity

Alignment

AT5G64310.1 arabinogalactan protein 1

1.1e-11

49.22

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Query:  RSLVAMILAAMLIGTSIAQSPAPSP--------SPSLSPSR--SPSLSPSVKSPESSPAAAPTPTSMKSPPSP----------PAASPSSISSPPADAPA
        +SLV ++LAA+LI +++AQSPAP+P        SP+ SP +  +P+ +P V SP  SPAAA TP S  SPPSP          PA SPS+IS  P +AP 
Subjt:  RSLVAMILAAMLIGTSIAQSPAPSP--------SPSLSPSR--SPSLSPSVKSPESSPAAAPTPTSMKSPPSP----------PAASPSSISSPPADAPA

Query:  PSGNGAASISFSLFGSVAVVLYAAVLIM
        P+  GA S  F+ FGSVAV+L AAVL++
Subjt:  PSGNGAASISFSLFGSVAVVLYAAVLIM

Sequences

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CDS sequence

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ATGGCGATTAGAAGTTTGGTGGCCATGATTTTGGCGGCGATGTTGATCGGCACTTCAATCGCGCAATCGCCGGCGCCTTCTCCGTCTCCGTCATTGTCTCCGAGTAGATC
GCCGTCGTTATCTCCGTCTGTGAAGTCGCCGGAATCCTCACCGGCTGCGGCGCCTACTCCGACCTCTATGAAGTCTCCGCCGTCTCCTCCGGCGGCGTCTCCGTCTTCGA
TCTCGTCGCCGCCGGCTGACGCTCCGGCTCCGTCTGGAAACGGCGCCGCTTCGATTTCTTTCTCGCTGTTCGGATCTGTGGCCGTTGTGTTATACGCTGCTGTTTTGATC
ATGTGA

mRNA sequence

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CTGGCGTGGGTTTCAGCTTTGACTGGAATATCTCTCTATATATACTCCATCTCTGCTACTGGTTTCTTCTCATAGCTCAATTTCTCTCAGTTCATCTTGTAGTCTTCATC
TTCTTCTCTCTCTGTTTCTCGATTCTTCGTTTTGTTGTTTTCGATTTATAGAAATGGCGATTAGAAGTTTGGTGGCCATGATTTTGGCGGCGATGTTGATCGGCACTTCA
ATCGCGCAATCGCCGGCGCCTTCTCCGTCTCCGTCATTGTCTCCGAGTAGATCGCCGTCGTTATCTCCGTCTGTGAAGTCGCCGGAATCCTCACCGGCTGCGGCGCCTAC
TCCGACCTCTATGAAGTCTCCGCCGTCTCCTCCGGCGGCGTCTCCGTCTTCGATCTCGTCGCCGCCGGCTGACGCTCCGGCTCCGTCTGGAAACGGCGCCGCTTCGATTT
CTTTCTCGCTGTTCGGATCTGTGGCCGTTGTGTTATACGCTGCTGTTTTGATCATGTGAGAGCAGGTTGATTTGATGAGTTCACTGTTCTTTTGATCTGAGTGATTTGTT
TATATAATTGCATTTCTTACATTTTTATTTTGAATTTTTTTTGTTTCTTTCACAGTTTCTTATGGATTTTATACCTTTTTTTTCTCTGATTAAATTTGTTTTGTTGTTAG
CTGAGCTCTGATTATTATCATATATATTAATTTTTTAAATCA

Protein sequence

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MAIRSLVAMILAAMLIGTSIAQSPAPSPSPSLSPSRSPSLSPSVKSPESSPAAAPTPTSMKSPPSPPAASPSSISSPPADAPAPSGNGAASISFSLFGSVAVVLYAAVLI
M

Sed0020023 (gene) of Chayote v1 genome