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Sed0020028 (gene) of Chayote v1 genome

Gene IDSed0020028
OrganismSechium edule (Chayote v1)
Description60S acidic ribosomal protein P2-like
Genome locationLG14:3315136..3317267
RNA-Seq ExpressionSed0020028
SyntenySed0020028
Gene Ontology termsGO:0002182 - cytoplasmic translational elongation (biological process)
GO:0016020 - membrane (cellular component)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR027534 - Ribosomal protein L12/P1/P2 family
IPR038716 - Ribosomal protein P1/P2, N-terminal domain
IPR044076 - Ribosomal protein P2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KZM99264.1 hypothetical protein DCAR_013374 [Daucus carota subsp. sativus]3.3e-2668.22Show/hide
Query:  MKIVGAYLLAVLGGNQSPSVHDIKAILGSVGIEAEDERIELLLSQVKGKDLAELIACGREKMASMPNGGAVALAVGSLAPTISYDPPAAEAKKEDK-EDV
        MK++ AYLLAVLGGN SP+  DIK ILGSVG EAED+RIELLLSQVKGKD+ ELIA GREK+AS+P+GGA A+AV + A   +  P AAEAKKE+K ED 
Subjt:  MKIVGAYLLAVLGGNQSPSVHDIKAILGSVGIEAEDERIELLLSQVKGKDLAELIACGREKMASMPNGGAVALAVGSLAPTISYDPPAAEAKKEDK-EDV

Query:  EDSDDVN
         +SDDV+
Subjt:  EDSDDVN

XP_012468193.1 PREDICTED: 60S acidic ribosomal protein P2A-like [Gossypium raimondii]4.4e-2666.67Show/hide
Query:  MKIVGAYLLAVLGGNQSPSVHDIKAILGSVGIEAEDERIELLLSQVKGKDLAELIACGREKMASMPNGGAVALAVGSLAPTISYDPPAAEAKKEDK-EDV
        MK+V AYLLAVLGGN SPS  D+KAILGSVG EAEDER++LLLS+VKGKD+ ELIA GREK+AS+P+GG VA+A  +     +  P AAEAKKE+K E+ 
Subjt:  MKIVGAYLLAVLGGNQSPSVHDIKAILGSVGIEAEDERIELLLSQVKGKDLAELIACGREKMASMPNGGAVALAVGSLAPTISYDPPAAEAKKEDK-EDV

Query:  EDSDD
        E+SDD
Subjt:  EDSDD

XP_017248547.1 PREDICTED: 60S acidic ribosomal protein P2-like [Daucus carota subsp. sativus]4.4e-2664.81Show/hide
Query:  MKIVGAYLLAVLGGNQSPSVHDIKAILGSVGIEAEDERIELLLSQVKGKDLAELIACGREKMASMPNGGAVALAVGSLAPTISYDPPAAEAKKEDKEDVE
        MK++ AYLLAVLGGN SP+  DIK ILGSVG EAED+RIELLLSQVKGKD+ ELIA GREK+AS+P+GGA A+AV + A   +  P AAEAKKE+K + E
Subjt:  MKIVGAYLLAVLGGNQSPSVHDIKAILGSVGIEAEDERIELLLSQVKGKDLAELIACGREKMASMPNGGAVALAVGSLAPTISYDPPAAEAKKEDKEDVE

Query:  DSDDVNIC
           D ++C
Subjt:  DSDDVNIC

XP_022143770.1 60S acidic ribosomal protein P2-2-like [Momordica charantia]1.5e-2664.23Show/hide
Query:  MKIVGAYLLAVLGGNQSPSVHDIKAILGSVGIEAEDERIELLLSQVKGKDLAELIACGREKMASMPNGGAVALAVGSL------APTISYDPPAAEAKKE
        MK+V AYLLAVLGGN SP+  DI+ IL SVG EAEDE+IELLLSQVKGKD+AE++ACGREKMAS+P  G VA AVG L      A   +    AAEAKKE
Subjt:  MKIVGAYLLAVLGGNQSPSVHDIKAILGSVGIEAEDERIELLLSQVKGKDLAELIACGREKMASMPNGGAVALAVGSL------APTISYDPPAAEAKKE

Query:  D-KEDVEDSDDVNICKLYSLFSD
        + KEDVEDSDD +IC  ++LF +
Subjt:  D-KEDVEDSDDVNICKLYSLFSD

XP_039034173.1 60S acidic ribosomal protein P2-2-like [Hibiscus syriacus]2.0e-2669.81Show/hide
Query:  MKIVGAYLLAVLGGNQSPSVHDIKAILGSVGIEAEDERIELLLSQVKGKDLAELIACGREKMASMPN-GGAVALAVGSLAPTISYDPPAAEAKKEDK-ED
        MK+V AYLLAVLGGN SPS  D+KAILGSVG EAED+RIELLLS+VKGKD+ ELIACGREK+AS+P+ GGAVA A  S     +   PAAEAKKE+K E+
Subjt:  MKIVGAYLLAVLGGNQSPSVHDIKAILGSVGIEAEDERIELLLSQVKGKDLAELIACGREKMASMPN-GGAVALAVGSLAPTISYDPPAAEAKKEDK-ED

Query:  VEDSDD
         E+SDD
Subjt:  VEDSDD

TrEMBL top hitse value%identityAlignment
A0A0D2RBU4 Uncharacterized protein2.1e-2666.67Show/hide
Query:  MKIVGAYLLAVLGGNQSPSVHDIKAILGSVGIEAEDERIELLLSQVKGKDLAELIACGREKMASMPNGGAVALAVGSLAPTISYDPPAAEAKKEDK-EDV
        MK+V AYLLAVLGGN SPS  D+KAILGSVG EAEDER++LLLS+VKGKD+ ELIA GREK+AS+P+GG VA+A  +     +  P AAEAKKE+K E+ 
Subjt:  MKIVGAYLLAVLGGNQSPSVHDIKAILGSVGIEAEDERIELLLSQVKGKDLAELIACGREKMASMPNGGAVALAVGSLAPTISYDPPAAEAKKEDK-EDV

Query:  EDSDD
        E+SDD
Subjt:  EDSDD

A0A165YUL9 Uncharacterized protein1.6e-2668.22Show/hide
Query:  MKIVGAYLLAVLGGNQSPSVHDIKAILGSVGIEAEDERIELLLSQVKGKDLAELIACGREKMASMPNGGAVALAVGSLAPTISYDPPAAEAKKEDK-EDV
        MK++ AYLLAVLGGN SP+  DIK ILGSVG EAED+RIELLLSQVKGKD+ ELIA GREK+AS+P+GGA A+AV + A   +  P AAEAKKE+K ED 
Subjt:  MKIVGAYLLAVLGGNQSPSVHDIKAILGSVGIEAEDERIELLLSQVKGKDLAELIACGREKMASMPNGGAVALAVGSLAPTISYDPPAAEAKKEDK-EDV

Query:  EDSDDVN
         +SDDV+
Subjt:  EDSDDVN

A0A5D2HPY7 Uncharacterized protein2.8e-2667.29Show/hide
Query:  MKIVGAYLLAVLGGNQSPSVHDIKAILGSVGIEAEDERIELLLSQVKGKDLAELIACGREKMASMPNGGAVALAVGSLAPTI--SYDPPAAEAKKEDK-E
        MK+V AYLLAVLGGN SPS  D+KAILGSVG EAEDERI+LLLS+VKGKD+ ELIA GREK+AS+P+GG   +AV + AP +  +  P AAEAKKE+K E
Subjt:  MKIVGAYLLAVLGGNQSPSVHDIKAILGSVGIEAEDERIELLLSQVKGKDLAELIACGREKMASMPNGGAVALAVGSLAPTI--SYDPPAAEAKKEDK-E

Query:  DVEDSDD
        + E+SDD
Subjt:  DVEDSDD

A0A5J5X1X4 Uncharacterized protein2.8e-2667.29Show/hide
Query:  MKIVGAYLLAVLGGNQSPSVHDIKAILGSVGIEAEDERIELLLSQVKGKDLAELIACGREKMASMPNGGAVALAVGSLAPTI--SYDPPAAEAKKEDK-E
        MK+V AYLLAVLGGN SPS  D+KAILGSVG EAEDERI+LLLS+VKGKD+ ELIA GREK+AS+P+GG   +AV + AP +  +  P AAEAKKE+K E
Subjt:  MKIVGAYLLAVLGGNQSPSVHDIKAILGSVGIEAEDERIELLLSQVKGKDLAELIACGREKMASMPNGGAVALAVGSLAPTI--SYDPPAAEAKKEDK-E

Query:  DVEDSDD
        + E+SDD
Subjt:  DVEDSDD

A0A6J1CPQ6 60S acidic ribosomal protein P2-2-like7.3e-2764.23Show/hide
Query:  MKIVGAYLLAVLGGNQSPSVHDIKAILGSVGIEAEDERIELLLSQVKGKDLAELIACGREKMASMPNGGAVALAVGSL------APTISYDPPAAEAKKE
        MK+V AYLLAVLGGN SP+  DI+ IL SVG EAEDE+IELLLSQVKGKD+AE++ACGREKMAS+P  G VA AVG L      A   +    AAEAKKE
Subjt:  MKIVGAYLLAVLGGNQSPSVHDIKAILGSVGIEAEDERIELLLSQVKGKDLAELIACGREKMASMPNGGAVALAVGSL------APTISYDPPAAEAKKE

Query:  D-KEDVEDSDDVNICKLYSLFSD
        + KEDVEDSDD +IC  ++LF +
Subjt:  D-KEDVEDSDDVNICKLYSLFSD

SwissProt top hitse value%identityAlignment
O01725 60S acidic ribosomal protein P28.8e-2256.48Show/hide
Query:  MKIVGAYLLAVLGGNQSPSVHDIKAILGSVGIEAEDERIELLLSQVKGKDLAELIACGREKMASMPNGGAVALAV--GSLAPTISYDPPAAEAKKEDK--
        M+ V AYLLAVLGGN +PS  DIK ILGSVGI+AEDER+  ++ ++KGKD+ E++A GR K++SMP+GG VA A   G  A       PAAE KKE+K  
Subjt:  MKIVGAYLLAVLGGNQSPSVHDIKAILGSVGIEAEDERIELLLSQVKGKDLAELIACGREKMASMPNGGAVALAV--GSLAPTISYDPPAAEAKKEDK--

Query:  EDVEDSDD
        E  E+SDD
Subjt:  EDVEDSDD

P41099 60S acidic ribosomal protein P24.7e-2352.94Show/hide
Query:  MKIVGAYLLAVLGGNQSPSVHDIKAILGSVGIEAEDERIELLLSQVKGKDLAELIACGREKMASMPNGGAVALAVGSLAPTISYDPPAA---EAKKEDKE
        MK++ A+LLA+LGGN SP+  D+K+IL SVG +A+D++IELLLSQVKGKD+ ELIA GRE++AS+P+GG VA+A  + A     D PAA   E KKE+K 
Subjt:  MKIVGAYLLAVLGGNQSPSVHDIKAILGSVGIEAEDERIELLLSQVKGKDLAELIACGREKMASMPNGGAVALAVGSLAPTISYDPPAA---EAKKEDKE

Query:  DVEDSDDVNICKLYSLFSD
        + E  +++     +SLF D
Subjt:  DVEDSDDVNICKLYSLFSD

P46252 60S acidic ribosomal protein P2A2.7e-2360.95Show/hide
Query:  MKIVGAYLLAVLGGNQSPSVHDIKAILGSVGIEAEDERIELLLSQVKGKDLAELIACGREKMASMPNGGAVALAVGSLAPTISYDPPAAEAKKEDK-EDV
        MK V AYLLAVL GN SPS  D+ AIL SVG E ++E++ELLLSQ+ GKD+ ELIA GREK AS+P GG   +AV + AP      PAAEAKKE+K E+ 
Subjt:  MKIVGAYLLAVLGGNQSPSVHDIKAILGSVGIEAEDERIELLLSQVKGKDLAELIACGREKMASMPNGGAVALAVGSLAPTISYDPPAAEAKKEDK-EDV

Query:  EDSDD
        E+SDD
Subjt:  EDSDD

P51407 60S acidic ribosomal protein P2-16.1e-2360.75Show/hide
Query:  MKIVGAYLLAVLGGNQSPSVHDIKAILGSVGIEAEDERIELLLSQVKGKDLAELIACGREKMASMPN--GGAVALAVGSLAPTISYDPPAAEAKKED-KE
        MK+V A+LLAVL G  SP+  DIK ILGSVG E ED +IELLL +VKGKDLAELIA GREK+AS+P+  GG VA+A  +         PAAE+KKE+ KE
Subjt:  MKIVGAYLLAVLGGNQSPSVHDIKAILGSVGIEAEDERIELLLSQVKGKDLAELIACGREKMASMPN--GGAVALAVGSLAPTISYDPPAAEAKKED-KE

Query:  DVEDSDD
        + E+SDD
Subjt:  DVEDSDD

Q9SLF7 60S acidic ribosomal protein P2-21.8e-2260.75Show/hide
Query:  MKIVGAYLLAVLGGNQSPSVHDIKAILGSVGIEAEDERIELLLSQVKGKDLAELIACGREKMASMPN--GGAVALAVGSLAPTISYDPPAAEAKKED-KE
        MK+V AYLLAVL G  SP+  DIK ILGSVG E ED +IELLL +VKGKDLAELIA GREK+AS+P+  GG VA+A  +          AAE+KKE+ KE
Subjt:  MKIVGAYLLAVLGGNQSPSVHDIKAILGSVGIEAEDERIELLLSQVKGKDLAELIACGREKMASMPN--GGAVALAVGSLAPTISYDPPAAEAKKED-KE

Query:  DVEDSDD
        + E+SDD
Subjt:  DVEDSDD

Arabidopsis top hitse value%identityAlignment
AT2G27710.1 60S acidic ribosomal protein family1.3e-2360.75Show/hide
Query:  MKIVGAYLLAVLGGNQSPSVHDIKAILGSVGIEAEDERIELLLSQVKGKDLAELIACGREKMASMPN--GGAVALAVGSLAPTISYDPPAAEAKKED-KE
        MK+V AYLLAVL G  SP+  DIK ILGSVG E ED +IELLL +VKGKDLAELIA GREK+AS+P+  GG VA+A  +          AAE+KKE+ KE
Subjt:  MKIVGAYLLAVLGGNQSPSVHDIKAILGSVGIEAEDERIELLLSQVKGKDLAELIACGREKMASMPN--GGAVALAVGSLAPTISYDPPAAEAKKED-KE

Query:  DVEDSDD
        + E+SDD
Subjt:  DVEDSDD

AT2G27710.2 60S acidic ribosomal protein family1.3e-2360.75Show/hide
Query:  MKIVGAYLLAVLGGNQSPSVHDIKAILGSVGIEAEDERIELLLSQVKGKDLAELIACGREKMASMPN--GGAVALAVGSLAPTISYDPPAAEAKKED-KE
        MK+V AYLLAVL G  SP+  DIK ILGSVG E ED +IELLL +VKGKDLAELIA GREK+AS+P+  GG VA+A  +          AAE+KKE+ KE
Subjt:  MKIVGAYLLAVLGGNQSPSVHDIKAILGSVGIEAEDERIELLLSQVKGKDLAELIACGREKMASMPN--GGAVALAVGSLAPTISYDPPAAEAKKED-KE

Query:  DVEDSDD
        + E+SDD
Subjt:  DVEDSDD

AT2G27710.3 60S acidic ribosomal protein family1.3e-2360.75Show/hide
Query:  MKIVGAYLLAVLGGNQSPSVHDIKAILGSVGIEAEDERIELLLSQVKGKDLAELIACGREKMASMPN--GGAVALAVGSLAPTISYDPPAAEAKKED-KE
        MK+V AYLLAVL G  SP+  DIK ILGSVG E ED +IELLL +VKGKDLAELIA GREK+AS+P+  GG VA+A  +          AAE+KKE+ KE
Subjt:  MKIVGAYLLAVLGGNQSPSVHDIKAILGSVGIEAEDERIELLLSQVKGKDLAELIACGREKMASMPN--GGAVALAVGSLAPTISYDPPAAEAKKED-KE

Query:  DVEDSDD
        + E+SDD
Subjt:  DVEDSDD

AT2G27710.4 60S acidic ribosomal protein family6.3e-2359.05Show/hide
Query:  MKIVGAYLLAVLGGNQSPSVHDIKAILGSVGIEAEDERIELLLSQVKGKDLAELIACGREKMASMPNGGAVALAVGSLAPTISYDPPAAEAKKED-KEDV
        MK+V AYLLAVL G  SP+  DIK ILGSVG E ED +IELLL +VKGKDLAELIA GREK+AS+P+GG  +               AAE+KKE+ KE+ 
Subjt:  MKIVGAYLLAVLGGNQSPSVHDIKAILGSVGIEAEDERIELLLSQVKGKDLAELIACGREKMASMPNGGAVALAVGSLAPTISYDPPAAEAKKED-KEDV

Query:  EDSDD
        E+SDD
Subjt:  EDSDD

AT2G27720.1 60S acidic ribosomal protein family4.4e-2460.75Show/hide
Query:  MKIVGAYLLAVLGGNQSPSVHDIKAILGSVGIEAEDERIELLLSQVKGKDLAELIACGREKMASMPN--GGAVALAVGSLAPTISYDPPAAEAKKED-KE
        MK+V A+LLAVL G  SP+  DIK ILGSVG E ED +IELLL +VKGKDLAELIA GREK+AS+P+  GG VA+A  +         PAAE+KKE+ KE
Subjt:  MKIVGAYLLAVLGGNQSPSVHDIKAILGSVGIEAEDERIELLLSQVKGKDLAELIACGREKMASMPN--GGAVALAVGSLAPTISYDPPAAEAKKED-KE

Query:  DVEDSDD
        + E+SDD
Subjt:  DVEDSDD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAAGAAGATGAAGATTGTTGGTGCTTATTTGCTTGCTGTTTTGGGTGGAAATCAGAGCCCCTCTGTTCATGATATTAAGGCCATTCTTGGCTCTGTTGGAATTGA
AGCTGAAGATGAAAGGATTGAGCTGCTCCTTTCTCAAGTCAAGGGCAAGGATTTAGCCGAGCTTATTGCCTGCGGCAGGGAGAAGATGGCATCGATGCCTAACGGTGGTG
CCGTTGCATTAGCCGTGGGCTCGCTCGCCCCTACCATTTCTTATGATCCTCCTGCAGCTGAGGCTAAAAAAGAGGACAAGGAAGATGTTGAAGACTCTGATGATGTAAAT
ATTTGCAAACTTTATTCTCTGTTTTCAGACATGGATATGTTGAAATCACTAGTCTTTGTTTCCTGGATTGATGAGCTTTTGCTTAGGGGAGTTGGAATATTGATTTTATC
TAATCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAACAAGAAGATGAAGATTGTTGGTGCTTATTTGCTTGCTGTTTTGGGTGGAAATCAGAGCCCCTCTGTTCATGATATTAAGGCCATTCTTGGCTCTGTTGGAATTGA
AGCTGAAGATGAAAGGATTGAGCTGCTCCTTTCTCAAGTCAAGGGCAAGGATTTAGCCGAGCTTATTGCCTGCGGCAGGGAGAAGATGGCATCGATGCCTAACGGTGGTG
CCGTTGCATTAGCCGTGGGCTCGCTCGCCCCTACCATTTCTTATGATCCTCCTGCAGCTGAGGCTAAAAAAGAGGACAAGGAAGATGTTGAAGACTCTGATGATGTAAAT
ATTTGCAAACTTTATTCTCTGTTTTCAGACATGGATATGTTGAAATCACTAGTCTTTGTTTCCTGGATTGATGAGCTTTTGCTTAGGGGAGTTGGAATATTGATTTTATC
TAATCTCTAA
Protein sequenceShow/hide protein sequence
MNKKMKIVGAYLLAVLGGNQSPSVHDIKAILGSVGIEAEDERIELLLSQVKGKDLAELIACGREKMASMPNGGAVALAVGSLAPTISYDPPAAEAKKEDKEDVEDSDDVN
ICKLYSLFSDMDMLKSLVFVSWIDELLLRGVGILILSNL