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Sed0020030 (gene) of Chayote v1 genome

Gene IDSed0020030
OrganismSechium edule (Chayote v1)
DescriptionLysM domain-containing protein
Genome locationLG14:22703420..22704264
RNA-Seq ExpressionSed0020030
SyntenySed0020030
Gene Ontology termsGO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR018392 - LysM domain
IPR036779 - LysM domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA3005938.1 Hypothetical predicted protein [Olea europaea subsp. europaea]8.2e-1850Show/hide
Query:  MAKAISSIVMNLTFLFALSLLIFSILVESRVSSGKFVGGGASLQCNKVQGVKSGDTCFDVANTFKLSTQRFNAINPNINCSALFIGQWICVNGFLI
        MAKA ++I M+L  +F +SLL+  ++ ESR   G  V G +   C++V  VKSGDTCF VA TF L+ + F+AINPN+NC+ALF+GQW+C++G ++
Subjt:  MAKAISSIVMNLTFLFALSLLIFSILVESRVSSGKFVGGGASLQCNKVQGVKSGDTCFDVANTFKLSTQRFNAINPNINCSALFIGQWICVNGFLI

KGN49182.1 hypothetical protein Csa_004378 [Cucumis sativus]2.4e-1758.76Show/hide
Query:  MAKAISSIVMNLTFLFALSLLIFSILVESRVSSGKFVGGGAS--LQCNKVQGVKSGDTCFDVANTFKLSTQRFNAINPNINCSALFIGQWICVNGFL
        MAKA  SI +   FL A SLLIF+I V+ R    + V   AS  LQCNK  GVKSGDTCF +A  FKL+T  F+ INPN+NCSALF+ QW+CVN FL
Subjt:  MAKAISSIVMNLTFLFALSLLIFSILVESRVSSGKFVGGGAS--LQCNKVQGVKSGDTCFDVANTFKLSTQRFNAINPNINCSALFIGQWICVNGFL

KGN49183.1 hypothetical protein Csa_003390 [Cucumis sativus]5.3e-1755.67Show/hide
Query:  MAKAISSIVMNLTFLFALSLLIFSILVESRVSSGK-FVGGGASLQCNKVQGVKSGDTCFDVANTFKLSTQRFNAINPNINCSALFIGQWICVNGFLI
        MAKA+ S    + FL A SLLIFSI VE+R +  +  V  G  LQCNKV GVK+GDTCFD+   FK++T  F+ INPN+NC+ LFIGQW+C++  LI
Subjt:  MAKAISSIVMNLTFLFALSLLIFSILVESRVSSGK-FVGGGASLQCNKVQGVKSGDTCFDVANTFKLSTQRFNAINPNINCSALFIGQWICVNGFLI

XP_016899229.1 PREDICTED: lysM domain-containing protein ARB_00327-like [Cucumis melo]9.7e-1960Show/hide
Query:  MAKAISSIVMNLTFLFALSLLIFSILVESRVSSGKFVGGGASLQCNKVQGVKSGDTCFDVANTFKLSTQRFNAINPNINCSALFIGQWICVNGFL
        MAKA   I +   FL A  LLIFSI V+  V + +       LQCNK  GVKSGDTCF +A+TFKLST  FN INPN+NCSALF+GQW+CVN FL
Subjt:  MAKAISSIVMNLTFLFALSLLIFSILVESRVSSGKFVGGGASLQCNKVQGVKSGDTCFDVANTFKLSTQRFNAINPNINCSALFIGQWICVNGFL

XP_031742455.1 lysM domain-containing protein ARB_00327-like [Cucumis sativus]5.3e-1756.84Show/hide
Query:  MAKAISSIVMNLTFLFALSLLIFSILVESRVSSGKFVGGGASLQCNKVQGVKSGDTCFDVANTFKLSTQRFNAINPNINCSALFIGQWICVNGFL
        MAKA  SI +   FL A SLLIF+I V+  V   +       LQCNK  GVKSGDTCF +A  FKL+T  F+ INPN+NCSALF+ QW+CVN FL
Subjt:  MAKAISSIVMNLTFLFALSLLIFSILVESRVSSGKFVGGGASLQCNKVQGVKSGDTCFDVANTFKLSTQRFNAINPNINCSALFIGQWICVNGFL

TrEMBL top hitse value%identityAlignment
A0A0A0KHZ8 LysM domain-containing protein2.6e-1755.67Show/hide
Query:  MAKAISSIVMNLTFLFALSLLIFSILVESRVSSGK-FVGGGASLQCNKVQGVKSGDTCFDVANTFKLSTQRFNAINPNINCSALFIGQWICVNGFLI
        MAKA+ S    + FL A SLLIFSI VE+R +  +  V  G  LQCNKV GVK+GDTCFD+   FK++T  F+ INPN+NC+ LFIGQW+C++  LI
Subjt:  MAKAISSIVMNLTFLFALSLLIFSILVESRVSSGK-FVGGGASLQCNKVQGVKSGDTCFDVANTFKLSTQRFNAINPNINCSALFIGQWICVNGFLI

A0A0A0KLD2 LysM domain-containing protein1.2e-1758.76Show/hide
Query:  MAKAISSIVMNLTFLFALSLLIFSILVESRVSSGKFVGGGAS--LQCNKVQGVKSGDTCFDVANTFKLSTQRFNAINPNINCSALFIGQWICVNGFL
        MAKA  SI +   FL A SLLIF+I V+ R    + V   AS  LQCNK  GVKSGDTCF +A  FKL+T  F+ INPN+NCSALF+ QW+CVN FL
Subjt:  MAKAISSIVMNLTFLFALSLLIFSILVESRVSSGKFVGGGAS--LQCNKVQGVKSGDTCFDVANTFKLSTQRFNAINPNINCSALFIGQWICVNGFL

A0A1S4DTB4 lysM domain-containing protein ARB_00327-like4.7e-1960Show/hide
Query:  MAKAISSIVMNLTFLFALSLLIFSILVESRVSSGKFVGGGASLQCNKVQGVKSGDTCFDVANTFKLSTQRFNAINPNINCSALFIGQWICVNGFL
        MAKA   I +   FL A  LLIFSI V+  V + +       LQCNK  GVKSGDTCF +A+TFKLST  FN INPN+NCSALF+GQW+CVN FL
Subjt:  MAKAISSIVMNLTFLFALSLLIFSILVESRVSSGKFVGGGASLQCNKVQGVKSGDTCFDVANTFKLSTQRFNAINPNINCSALFIGQWICVNGFL

A0A2Z7A345 LysM domain-containing protein1.3e-1646.81Show/hide
Query:  MAKAISSIVMNLTFLFALSLLIFSILVESRVSSGKFVGGGASLQCNKVQGVKSGDTCFDVANTFKLSTQRFNAINPNINCSALFIGQWICVNGF
        MAKA ++  + L F   LSL++ + + ESRV+         +L CN V  V  GDTCFD+A +F L+T  F+ INPN+NC ALF+GQW+C++GF
Subjt:  MAKAISSIVMNLTFLFALSLLIFSILVESRVSSGKFVGGGASLQCNKVQGVKSGDTCFDVANTFKLSTQRFNAINPNINCSALFIGQWICVNGF

A0A2Z7A4L5 LysM domain-containing protein4.4e-1747.87Show/hide
Query:  MAKAISSIVMNLTFLFALSLLIFSILVESRVSSGKFVGGGASLQCNKVQGVKSGDTCFDVANTFKLSTQRFNAINPNINCSALFIGQWICVNGF
        MAKA ++  + L F   LSL++ + + ESRV+         +L CN V  V  GDTCFD+A +F L+T  F+AINPN+NC ALF+GQW+C++GF
Subjt:  MAKAISSIVMNLTFLFALSLLIFSILVESRVSSGKFVGGGASLQCNKVQGVKSGDTCFDVANTFKLSTQRFNAINPNINCSALFIGQWICVNGF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAAGGCTATTAGTTCAATTGTCATGAACCTTACCTTCTTATTCGCTCTGTCTCTTCTCATATTTTCTATTTTGGTGGAAAGTAGAGTCTCCTCGGGTAAATTTGT
TGGGGGAGGGGCAAGTTTGCAATGCAACAAAGTGCAAGGGGTGAAAAGTGGAGACACTTGTTTTGATGTTGCAAATACATTCAAGTTGAGCACTCAACGATTCAATGCTA
TCAACCCTAATATCAACTGCTCTGCTCTCTTTATTGGTCAATGGATTTGTGTCAATGGCTTTCTCATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTAAGGCTATTAGTTCAATTGTCATGAACCTTACCTTCTTATTCGCTCTGTCTCTTCTCATATTTTCTATTTTGGTGGAAAGTAGAGTCTCCTCGGGTAAATTTGT
TGGGGGAGGGGCAAGTTTGCAATGCAACAAAGTGCAAGGGGTGAAAAGTGGAGACACTTGTTTTGATGTTGCAAATACATTCAAGTTGAGCACTCAACGATTCAATGCTA
TCAACCCTAATATCAACTGCTCTGCTCTCTTTATTGGTCAATGGATTTGTGTCAATGGCTTTCTCATCTAA
Protein sequenceShow/hide protein sequence
MAKAISSIVMNLTFLFALSLLIFSILVESRVSSGKFVGGGASLQCNKVQGVKSGDTCFDVANTFKLSTQRFNAINPNINCSALFIGQWICVNGFLI