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Sed0020155 (gene) of Chayote v1 genome

Gene IDSed0020155
OrganismSechium edule (Chayote v1)
Description40S ribosomal protein S21
Genome locationLG12:5153795..5156072
RNA-Seq ExpressionSed0020155
SyntenySed0020155
Gene Ontology termsGO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0000461 - endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134210.2 40S ribosomal protein S21-2 [Cucumis sativus]1.8e-3797.56Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTCQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYT QFSTFALCGFIRAQGDADSALDRLWQKKKVEV QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTCQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ

XP_022138287.1 40S ribosomal protein S21-2 [Momordica charantia]3.9e-3796.34Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTCQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGH+DENGIYT QFSTFALCGFIRAQGDADSALDRLWQKKKVEV QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTCQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ

XP_022930553.1 40S ribosomal protein S21-2-like [Cucurbita moschata]5.2e-3795.12Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTCQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQIN+GHLDENGIYT QFSTFALCG+IRAQGDADSALDRLWQKKKVEV QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTCQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ

XP_022950628.1 40S ribosomal protein S21-2-like [Cucurbita moschata]8.0e-3897.56Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTCQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYT QFSTFALCGFIRAQGDADSALDRLW KKKVEVHQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTCQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ

XP_022973757.1 40S ribosomal protein S21-2-like [Cucurbita maxima]1.8e-3796.34Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTCQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLD+NGIYT QFSTFALCGFIRAQGDADSALDRLW KKKVEVHQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTCQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ

TrEMBL top hitse value%identityAlignment
A0A0A0L7W3 40S ribosomal protein S218.6e-3897.56Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTCQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYT QFSTFALCGFIRAQGDADSALDRLWQKKKVEV QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTCQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ

A0A1S4DSM1 40S ribosomal protein S218.6e-3897.56Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTCQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYT QFSTFALCGFIRAQGDADSALDRLWQKKKVEV QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTCQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ

A0A5D3CXC9 40S ribosomal protein S218.6e-3897.56Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTCQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYT QFSTFALCGFIRAQGDADSALDRLWQKKKVEV QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTCQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ

A0A6J1GFE6 40S ribosomal protein S213.9e-3897.56Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTCQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYT QFSTFALCGFIRAQGDADSALDRLW KKKVEVHQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTCQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ

A0A6J1IJN4 40S ribosomal protein S218.6e-3896.34Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTCQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLD+NGIYT QFSTFALCGFIRAQGDADSALDRLW KKKVEVHQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTCQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ

SwissProt top hitse value%identityAlignment
P35687 40S ribosomal protein S219.5e-3479.27Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTCQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ
        MQNEEG++ +LY+PRKCSATNR+IT+KDHASVQINIGH+DENG+Y  +F+TFAL GFIRAQGDADSALDRLWQK+K EV QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTCQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ

Q3E902 40S ribosomal protein S21-23.5e-3685.19Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTCQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQ
        MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+NIGHLD NG+YT QF+TFALCGF+RAQGDADS +DRLWQKKKVE  Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTCQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQ

Q41852 40S ribosomal protein S211.0e-3277.78Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTCQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQ
        MQNEEGK  +LY+PRKCSATNR+IT+KDHASVQINIGHLD NG+Y   F+TFAL GF+RAQGDADS+LDRLWQKKK E+ Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTCQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQ

Q9M337 40S ribosomal protein S21-13.8e-3580.49Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTCQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YT QF+TFALCGF+RAQGDADS +DRLWQKKKVE  QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTCQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ

Q9SMI2 40S ribosomal protein S212.3e-2466.67Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDEN-GIYTCQFSTFALCGFIRAQGDADSALDRLWQK
        MQN+EGKI +LYIPRKCSATNRLI++ DHA+VQIN+GH+D N G+YT  ++TFALCGF+R+ G++D+AL+RL  K
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDEN-GIYTCQFSTFALCGFIRAQGDADSALDRLWQK

Arabidopsis top hitse value%identityAlignment
AT3G53890.1 Ribosomal protein S21e2.7e-3680.49Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTCQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YT QF+TFALCGF+RAQGDADS +DRLWQKKKVE  QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTCQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ

AT3G53890.2 Ribosomal protein S21e2.7e-3680.49Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTCQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YT QF+TFALCGF+RAQGDADS +DRLWQKKKVE  QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTCQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ

AT5G27700.1 Ribosomal protein S21e2.5e-3785.19Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTCQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQ
        MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+NIGHLD NG+YT QF+TFALCGF+RAQGDADS +DRLWQKKKVE  Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTCQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGAACGAAGAGGGAAAAATCACAGAGCTCTACATTCCCAGAAAATGCTCCGCCACGAACCGGCTGATTACTTCCAAGGACCATGCTTCTGTTCAGATCAACATTGG
GCATTTGGATGAGAATGGCATCTACACTTGCCAGTTCTCCACTTTTGCTCTCTGTGGTTTCATTCGGGCCCAGGGAGATGCTGACAGTGCATTGGATCGGCTCTGGCAGA
AGAAGAAAGTGGAAGTTCATCAACAATAG
mRNA sequenceShow/hide mRNA sequence
ATAATAATTTAACCTAATTGAATTTATGATAATTAACCTAGGGTTTCTGTTTTATAATTTAACCTAATTTAAATTTAAGAAAAGCGGTTTCTGTTCAAGTTTTAGGATTT
CTTCCCAACTCGTTTCCTCTGCTGCGCTCTGGTTTTCTAATTCTCAACAATTAGTTGGCACAATTGTCAAGATGCAGAACGAAGAGGGAAAAATCACAGAGCTCTACATT
CCCAGAAAATGCTCCGCCACGAACCGGCTGATTACTTCCAAGGACCATGCTTCTGTTCAGATCAACATTGGGCATTTGGATGAGAATGGCATCTACACTTGCCAGTTCTC
CACTTTTGCTCTCTGTGGTTTCATTCGGGCCCAGGGAGATGCTGACAGTGCATTGGATCGGCTCTGGCAGAAGAAGAAAGTGGAAGTTCATCAACAATAGATGATTCTGC
TGTTCTGCTTCATCCCTATAAGTTTTCATGGATAGAAATACTATACACTTCAACTTTTTTTTTGAACCTATCATACTTATTATTTAAGTAGTTTCTTTTGACCATTTGAA
CTCATTAGTTTCTTTAAATGCAAACTCAACTCCACCTGAGTCAGTACAAGCTTTGAAGGATAGAAAGGAGGGAGAAAACTAGGGTGAAGGAAATATGTTGAATTTTTTTT
GCCATGGAAAAAGTTTAAGAGAGTGAGGTTCTATATGGGCCCATGGGGGTGTTTGTTTGCATATTTAAGTAGTTTTTAGGTTAAGGAGTTATATTGAGTAGTTAAAAATT
GAGATTTGTG
Protein sequenceShow/hide protein sequence
MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTCQFSTFALCGFIRAQGDADSALDRLWQKKKVEVHQQ