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Sed0020171 (gene) of Chayote v1 genome

Gene IDSed0020171
OrganismSechium edule (Chayote v1)
Descriptionreplication protein A 70 kDa DNA-binding subunit A-like
Genome locationLG10:9682411..9682875
RNA-Seq ExpressionSed0020171
SyntenySed0020171
Gene Ontology termsGO:0009987 - cellular process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN51395.1 hypothetical protein Csa_008714 [Cucumis sativus]6.5e-0958.62Show/hide
Query:  MIVSDGDSEAYITMFDAAEHLTSCNVVEYFNDLSQVQNKESSEYYQNLVLAEDKKYYF
        + +SDGD + YIT+FDA+++L  C+V EY+ DL QV  KE S+ YQNLVL EDKKY F
Subjt:  MIVSDGDSEAYITMFDAAEHLTSCNVVEYFNDLSQVQNKESSEYYQNLVLAEDKKYYF

OIT08014.1 hypothetical protein A4A49_30234 [Nicotiana attenuata]5.1e-0634.45Show/hide
Query:  VSDGDSEAYITMFDAAEHLTSCNVVEYFNDLSQVQNKESSEYYQNLVLAEDKKYYFLVRL---NKDGERDRARRQI-VVQEICTINLMAE-KKFPMNKNK
        VS G+    + +FDAAE+L  C+V EY   +     KE S YY+ LVL++DK++ FLV++   NK+  R    ++I   Q++ TI ++ E K   + + +
Subjt:  VSDGDSEAYITMFDAAEHLTSCNVVEYFNDLSQVQNKESSEYYQNLVLAEDKKYYFLVRL---NKDGERDRARRQI-VVQEICTINLMAE-KKFPMNKNK

Query:  GKNALEEVENANNKKAKIE
         K   E+    +NK+ K+E
Subjt:  GKNALEEVENANNKKAKIE

XP_016476407.1 PREDICTED: replication protein A 70 kDa DNA-binding subunit B-like [Nicotiana tabacum]6.7e-0638.46Show/hide
Query:  VSDGDSEAYITMFDAAEHLTSCNVVEYFNDLSQVQNKESSEYYQNLVLAEDKKYYFLVRLNKDGERDRARRQIVVQEI
        V D     Y+T+F++  +L  C+V  Y   +S  QNKE S++Y+ LVL+ +KK+ FLV+++     DR  R+ +V+EI
Subjt:  VSDGDSEAYITMFDAAEHLTSCNVVEYFNDLSQVQNKESSEYYQNLVLAEDKKYYFLVRLNKDGERDRARRQIVVQEI

XP_020242412.1 replication protein A 70 kDa DNA-binding subunit B-like [Asparagus officinalis]5.1e-0633.33Show/hide
Query:  VSDGDSEAYITMFDAAEHLTSCNVVEYFNDLSQVQNKESSEYYQNLVLAEDKKYYFLVRLNKDGERDRARRQIVVQEICTINLM--------AEKKFPMN
        V D   +AY+T+FD A  LT C+  EY +   +   +  S  YQ ++   DK+Y FLV++N+  E  R   +I  QEIC+ N           + K    
Subjt:  VSDGDSEAYITMFDAAEHLTSCNVVEYFNDLSQVQNKESSEYYQNLVLAEDKKYYFLVRLNKDGERDRARRQIVVQEICTINLM--------AEKKFPMN

Query:  KNKGKNALEEVEN----ANNKKAKIE
        K K   +L++  N     NNK  KIE
Subjt:  KNKGKNALEEVEN----ANNKKAKIE

XP_020268430.1 uncharacterized protein LOC109843879 [Asparagus officinalis]1.5e-0532.54Show/hide
Query:  VSDGDSEAYITMFDAAEHLTSCNVVEYFNDLSQVQNKESSEYYQNLVLAEDKKYYFLVRLNKDGERDRARRQIVVQEICTINLM--------AEKKFPMN
        V D   + Y+T+FD A  LT C+  EY +   +   +  S  YQ ++   DK+Y FLV++N+  E  R   +I  QEIC+ N           + K    
Subjt:  VSDGDSEAYITMFDAAEHLTSCNVVEYFNDLSQVQNKESSEYYQNLVLAEDKKYYFLVRLNKDGERDRARRQIVVQEICTINLM--------AEKKFPMN

Query:  KNKGKNALEEVEN----ANNKKAKIE
        K K   +L++  N     NNK  KIE
Subjt:  KNKGKNALEEVEN----ANNKKAKIE

TrEMBL top hitse value%identityAlignment
A0A0A0KP46 Uncharacterized protein3.1e-0958.62Show/hide
Query:  MIVSDGDSEAYITMFDAAEHLTSCNVVEYFNDLSQVQNKESSEYYQNLVLAEDKKYYF
        + +SDGD + YIT+FDA+++L  C+V EY+ DL QV  KE S+ YQNLVL EDKKY F
Subjt:  MIVSDGDSEAYITMFDAAEHLTSCNVVEYFNDLSQVQNKESSEYYQNLVLAEDKKYYF

A0A1J6IT36 Rep_fac-A_C domain-containing protein2.5e-0634.45Show/hide
Query:  VSDGDSEAYITMFDAAEHLTSCNVVEYFNDLSQVQNKESSEYYQNLVLAEDKKYYFLVRL---NKDGERDRARRQI-VVQEICTINLMAE-KKFPMNKNK
        VS G+    + +FDAAE+L  C+V EY   +     KE S YY+ LVL++DK++ FLV++   NK+  R    ++I   Q++ TI ++ E K   + + +
Subjt:  VSDGDSEAYITMFDAAEHLTSCNVVEYFNDLSQVQNKESSEYYQNLVLAEDKKYYFLVRL---NKDGERDRARRQI-VVQEICTINLMAE-KKFPMNKNK

Query:  GKNALEEVENANNKKAKIE
         K   E+    +NK+ K+E
Subjt:  GKNALEEVENANNKKAKIE

A0A1S4AI89 replication protein A 70 kDa DNA-binding subunit B-like3.3e-0638.46Show/hide
Query:  VSDGDSEAYITMFDAAEHLTSCNVVEYFNDLSQVQNKESSEYYQNLVLAEDKKYYFLVRLNKDGERDRARRQIVVQEI
        V D     Y+T+F++  +L  C+V  Y   +S  QNKE S++Y+ LVL+ +KK+ FLV+++     DR  R+ +V+EI
Subjt:  VSDGDSEAYITMFDAAEHLTSCNVVEYFNDLSQVQNKESSEYYQNLVLAEDKKYYFLVRLNKDGERDRARRQIVVQEI

A0A1S4CG46 replication protein A 70 kDa DNA-binding subunit A-like1.2e-0532.94Show/hide
Query:  VSDGDSEAYITMFDAAEHLTSCNVVEYFNDLSQVQNKESSEYYQNLVLAEDKKYYFLVRLNKDGERDRARRQIVVQEICTINLMA
        V D     Y+T+F++  +L  C+V  Y   +S  Q KE S++Y+ LVL+ +K++ FLV+++     DR  R+ + +EI  +  +A
Subjt:  VSDGDSEAYITMFDAAEHLTSCNVVEYFNDLSQVQNKESSEYYQNLVLAEDKKYYFLVRLNKDGERDRARRQIVVQEICTINLMA

A0A5P1F312 Uncharacterized protein2.1e-0539.74Show/hide
Query:  VSDGDSEAYITMFDAAEHLTSCNVVEYFNDLSQVQNKESSEYYQNLVLAEDKKYYFLVRLNKDGERDRARRQIVVQEI
        V+DG   AY+T+FD AE L  C  + Y     ++   ESSE YQ +    +K+Y FLV++N+  E +R  R I+ QE+
Subjt:  VSDGDSEAYITMFDAAEHLTSCNVVEYFNDLSQVQNKESSEYYQNLVLAEDKKYYFLVRLNKDGERDRARRQIVVQEI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAGTTTCAGATGGAGATTCAGAAGCCTACATTACCATGTTTGATGCTGCTGAGCATTTAACAAGTTGTAATGTGGTTGAGTATTTCAATGATCTATCTCAAGTTCA
AAACAAGGAAAGTAGTGAATATTATCAAAACTTGGTTTTAGCTGAAGATAAGAAATACTACTTCTTGGTTAGATTGAACAAGGATGGAGAAAGAGATAGAGCACGCCGTC
AAATTGTTGTTCAAGAGATATGCACAATCAATTTAATGGCAGAAAAGAAGTTTCCAATGAACAAAAATAAAGGAAAAAATGCCTTAGAAGAAGTCGAGAATGCCAATAAT
AAAAAGGCTAAAATTGAAGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGATAGTTTCAGATGGAGATTCAGAAGCCTACATTACCATGTTTGATGCTGCTGAGCATTTAACAAGTTGTAATGTGGTTGAGTATTTCAATGATCTATCTCAAGTTCA
AAACAAGGAAAGTAGTGAATATTATCAAAACTTGGTTTTAGCTGAAGATAAGAAATACTACTTCTTGGTTAGATTGAACAAGGATGGAGAAAGAGATAGAGCACGCCGTC
AAATTGTTGTTCAAGAGATATGCACAATCAATTTAATGGCAGAAAAGAAGTTTCCAATGAACAAAAATAAAGGAAAAAATGCCTTAGAAGAAGTCGAGAATGCCAATAAT
AAAAAGGCTAAAATTGAAGTTTAG
Protein sequenceShow/hide protein sequence
MIVSDGDSEAYITMFDAAEHLTSCNVVEYFNDLSQVQNKESSEYYQNLVLAEDKKYYFLVRLNKDGERDRARRQIVVQEICTINLMAEKKFPMNKNKGKNALEEVENANN
KKAKIEV