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Sed0020202 (gene) of Chayote v1 genome

Gene IDSed0020202
OrganismSechium edule (Chayote v1)
Description40S ribosomal protein S27
Genome locationLG11:31287394..31289251
RNA-Seq ExpressionSed0020202
SyntenySed0020202
Gene Ontology termsGO:0000028 - ribosomal small subunit assembly (biological process)
GO:0006412 - translation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000592 - Ribosomal protein S27
IPR011332 - Zinc-binding ribosomal protein
IPR023407 - Ribosomal protein S27, zinc-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAY68717.1 hypothetical protein CUMW_266320 [Citrus unshiu]1.1e-4096.51Show/hide
Query:  MGLQNDIDLLNPPAELEKKKHKLKRLLQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD
        M LQNDIDLLNPPAELEKKKHKLKRL+QSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD
Subjt:  MGLQNDIDLLNPPAELEKKKHKLKRLLQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD

XP_006446889.1 40S ribosomal protein S27-2 [Citrus clementina]1.1e-4096.51Show/hide
Query:  MGLQNDIDLLNPPAELEKKKHKLKRLLQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD
        M LQNDIDLLNPPAELEKKKHKLKRL+QSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD
Subjt:  MGLQNDIDLLNPPAELEKKKHKLKRLLQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD

XP_010695944.1 PREDICTED: 40S ribosomal protein S27-2 [Beta vulgaris subsp. vulgaris]2.3e-4095.35Show/hide
Query:  MGLQNDIDLLNPPAELEKKKHKLKRLLQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD
        M LQNDIDLLNPPAELEKKKHKLKRL+QSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGNCQ+VLCQPTGGRARLTEGCSFRRKGD
Subjt:  MGLQNDIDLLNPPAELEKKKHKLKRLLQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD

XP_021657498.1 40S ribosomal protein S27-2-like [Hevea brasiliensis]2.3e-4095.35Show/hide
Query:  MGLQNDIDLLNPPAELEKKKHKLKRLLQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD
        M LQNDIDLLNPPAELEK+KHKLKRLLQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGNCQ+VLCQPTGGRARLTEGCSFRRKGD
Subjt:  MGLQNDIDLLNPPAELEKKKHKLKRLLQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD

XP_022960233.1 40S ribosomal protein S27-2-like [Cucurbita moschata]2.3e-4095.35Show/hide
Query:  MGLQNDIDLLNPPAELEKKKHKLKRLLQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD
        M LQNDIDLLNPPAELEK+KHKLKRL+QSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD
Subjt:  MGLQNDIDLLNPPAELEKKKHKLKRLLQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD

TrEMBL top hitse value%identityAlignment
A0A2H5QKC8 40S ribosomal protein S275.1e-4196.51Show/hide
Query:  MGLQNDIDLLNPPAELEKKKHKLKRLLQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD
        M LQNDIDLLNPPAELEKKKHKLKRL+QSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD
Subjt:  MGLQNDIDLLNPPAELEKKKHKLKRLLQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD

A0A2H5QVV3 40S ribosomal protein S275.1e-4196.51Show/hide
Query:  MGLQNDIDLLNPPAELEKKKHKLKRLLQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD
        M LQNDIDLLNPPAELEKKKHKLKRL+QSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD
Subjt:  MGLQNDIDLLNPPAELEKKKHKLKRLLQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD

A0A5D2ESD0 40S ribosomal protein S271.1e-4093.02Show/hide
Query:  MGLQNDIDLLNPPAELEKKKHKLKRLLQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD
        MGLQNDIDLLNPPAELEKKKHKLKRL+Q+PNSFFMDVKCQGCFNITTVFSHSQ+VVVCGNCQ+VLCQPTGG+ARLTEGCSFR+KGD
Subjt:  MGLQNDIDLLNPPAELEKKKHKLKRLLQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD

A0A5J5TUQ0 40S ribosomal protein S271.1e-4093.02Show/hide
Query:  MGLQNDIDLLNPPAELEKKKHKLKRLLQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD
        MGLQNDIDLLNPPAELEKKKHKLKRL+Q+PNSFFMDVKCQGCFNITTVFSHSQ+VVVCGNCQ+VLCQPTGG+ARLTEGCSFR+KGD
Subjt:  MGLQNDIDLLNPPAELEKKKHKLKRLLQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD

V4W2J8 40S ribosomal protein S275.1e-4196.51Show/hide
Query:  MGLQNDIDLLNPPAELEKKKHKLKRLLQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD
        M LQNDIDLLNPPAELEKKKHKLKRL+QSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD
Subjt:  MGLQNDIDLLNPPAELEKKKHKLKRLLQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD

SwissProt top hitse value%identityAlignment
O64650 40S ribosomal protein S27-14.6e-3986.9Show/hide
Query:  MGLQNDIDLLNPPAELEKKKHKLKRLLQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRK
        M LQNDIDLLNPPAELEK+KHKLKRL+QSPNSFFMDVKCQGCFNITTVFSHSQ+VV+CGNCQ++LC PTGG+A+LTEGCSFR+K
Subjt:  MGLQNDIDLLNPPAELEKKKHKLKRLLQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRK

P47903 40S ribosomal protein S278.1e-3682.56Show/hide
Query:  MGLQNDIDLLNPPAELEKKKHKLKRLLQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD
        M L +DIDLLNPPAELEK KHK KRL+QSPNSFFMDVKCQGCFNITTVFSHSQ+VV+CG+C SVLC PTG   RLTEGCSFRRK D
Subjt:  MGLQNDIDLLNPPAELEKKKHKLKRLLQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD

Q8L953 40S ribosomal protein S27-36.0e-3988.1Show/hide
Query:  MGLQNDIDLLNPPAELEKKKHKLKRLLQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRK
        M LQNDIDLL+PP ELEK+KHKLKRL+QSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGNCQ+VLCQPTGG+ARL EGCSFR+K
Subjt:  MGLQNDIDLLNPPAELEKKKHKLKRLLQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRK

Q96564 40S ribosomal protein S279.3e-4089.53Show/hide
Query:  MGLQNDIDLLNPPAELEKKKHKLKRLLQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD
        M LQNDIDLLNPPAELEK KHK KRL+QSPNSFFMDVKCQGCFNITTVFSHSQ+VVVC  CQ+VLCQPTGG+ARLTEGCSFRRKGD
Subjt:  MGLQNDIDLLNPPAELEKKKHKLKRLLQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD

Q9M2F1 40S ribosomal protein S27-24.4e-4290.7Show/hide
Query:  MGLQNDIDLLNPPAELEKKKHKLKRLLQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD
        M LQNDIDLLNPPAELEK+KHKLKRL+QSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGNCQ++LCQPTGG+A+LTEGCSFRRKGD
Subjt:  MGLQNDIDLLNPPAELEKKKHKLKRLLQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD

Arabidopsis top hitse value%identityAlignment
AT2G45710.1 Zinc-binding ribosomal protein family protein3.3e-4086.9Show/hide
Query:  MGLQNDIDLLNPPAELEKKKHKLKRLLQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRK
        M LQNDIDLLNPPAELEK+KHKLKRL+QSPNSFFMDVKCQGCFNITTVFSHSQ+VV+CGNCQ++LC PTGG+A+LTEGCSFR+K
Subjt:  MGLQNDIDLLNPPAELEKKKHKLKRLLQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRK

AT3G61110.1 ribosomal protein S273.2e-4390.7Show/hide
Query:  MGLQNDIDLLNPPAELEKKKHKLKRLLQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD
        M LQNDIDLLNPPAELEK+KHKLKRL+QSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGNCQ++LCQPTGG+A+LTEGCSFRRKGD
Subjt:  MGLQNDIDLLNPPAELEKKKHKLKRLLQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD

AT3G61111.1 Zinc-binding ribosomal protein family protein5.4e-3576.74Show/hide
Query:  MGLQNDIDLLNPPAELEKKKHKLKRLLQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD
        M LQNDIDLLNPPAELEK+KHKLKRL+ SPNS+FM V+C  C NITT+FSHSQ+VVVCG CQ+VLCQPTGG+A+LT GCSFR+  D
Subjt:  MGLQNDIDLLNPPAELEKKKHKLKRLLQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD

AT5G47930.1 Zinc-binding ribosomal protein family protein4.3e-4088.1Show/hide
Query:  MGLQNDIDLLNPPAELEKKKHKLKRLLQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRK
        M LQNDIDLL+PP ELEK+KHKLKRL+QSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGNCQ+VLCQPTGG+ARL EGCSFR+K
Subjt:  MGLQNDIDLLNPPAELEKKKHKLKRLLQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCTCCAAAACGATATTGATTTGCTGAATCCTCCTGCTGAGCTAGAGAAGAAGAAGCACAAGCTCAAGCGTCTTTTGCAGTCGCCTAACTCCTTCTTCATGGATGT
CAAGTGCCAAGGATGCTTCAACATTACCACTGTCTTCAGCCACTCGCAATCTGTCGTGGTATGTGGTAACTGCCAGTCAGTCTTGTGCCAGCCAACCGGAGGACGGGCTA
GACTCACCGAGGGTTGTTCTTTTAGGAGAAAGGGAGATTGA
mRNA sequenceShow/hide mRNA sequence
GCGGTCGCGCGCTTCTCTGCATAGCATTCACAGGATTTCCTTCTTTCACCGATTTTCTTGCGAGATTCTTCAACATGGGTCTCCAAAACGATATTGATTTGCTGAATCCT
CCTGCTGAGCTAGAGAAGAAGAAGCACAAGCTCAAGCGTCTTTTGCAGTCGCCTAACTCCTTCTTCATGGATGTCAAGTGCCAAGGATGCTTCAACATTACCACTGTCTT
CAGCCACTCGCAATCTGTCGTGGTATGTGGTAACTGCCAGTCAGTCTTGTGCCAGCCAACCGGAGGACGGGCTAGACTCACCGAGGGTTGTTCTTTTAGGAGAAAGGGAG
ATTGATTGATGCTTGTTTCTTTTTGATGGGAAGAAATTGCTGTCTGTTTTGATCGTGTTATATTTATTTTTCTTGTAAGGTATCAGACTTGATTATGCTATCTCGCCTAA
AATAGATTATATTTTTCCTTCTAGAGTTATCTTGTTTTGGTTAAAAGATGGATTTCATGTAATGAACTTTTAGCTGCATTAGTAAAGCTTAATTCTCTTCTGATC
Protein sequenceShow/hide protein sequence
MGLQNDIDLLNPPAELEKKKHKLKRLLQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD