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Sed0020224 (gene) of Chayote v1 genome

Gene IDSed0020224
OrganismSechium edule (Chayote v1)
DescriptionVQ domain-containing protein
Genome locationLG11:1823922..1824278
RNA-Seq ExpressionSed0020224
SyntenySed0020224
Gene Ontology termsGO:0051091 - positive regulation of DNA-binding transcription factor activity (biological process)
InterPro domainsIPR008889 - VQ
IPR039335 - Sigma factor binding protein 1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063578.1 hypothetical protein E6C27_scaffold329G00880 [Cucumis melo var. makuwa]2.9e-0958.9Show/hide
Query:  MMIKASNAAEFRAIVQQLTGVDSGGSVRCRRSHKSAASSGRSTPSFSMLHADHEMEVVEFPNDMSSSLLELND
        MMIKAS+A EFRAIVQQLTG DS  +   RR+ KS +   R TPS SM HAD EMEV++F +D  +SLL+ +D
Subjt:  MMIKASNAAEFRAIVQQLTGVDSGGSVRCRRSHKSAASSGRSTPSFSMLHADHEMEVVEFPNDMSSSLLELND

KAG6599333.1 hypothetical protein SDJN03_09111, partial [Cucurbita argyrosperma subsp. sororia]2.3e-2255.38Show/hide
Query:  MGKCGEN----QQNYENPTKVQRKPIKVKYISSPMMIKASNAAEFRAIVQQLTGVDSGGSVRCRRSHKSAASSGRSTPSFSMLHADHEMEVVEFPNDMSS
        MGKCGEN    Q+  +NPTKVQRKPIKVKYISSPMMIKASNA EFRAIVQQLTG  S    R R +HK    + + TPS S LHA+ +ME ++  ++MSS
Subjt:  MGKCGEN----QQNYENPTKVQRKPIKVKYISSPMMIKASNAAEFRAIVQQLTGVDSGGSVRCRRSHKSAASSGRSTPSFSMLHADHEMEVVEFPNDMSS

Query:  SL--------LELNDGYFGSFMGFQSPCLF
         L        + L++    +FMGFQ+ CLF
Subjt:  SL--------LELNDGYFGSFMGFQSPCLF

KGN60779.1 hypothetical protein Csa_019238 [Cucumis sativus]4.8e-2054.61Show/hide
Query:  MGKCGEN----------QQNYENPTKVQRKPIKVKYISSPMMIKASNAAEFRAIVQQLTGVDSGGSVRCRRSHKSAASSGRSTPSFSMLHAD-HEMEVVE
        MGKCGEN          Q   +NPTKVQRKPIKVKYISSPMMIKASNA EFRAIVQQLTG DS    R RR+ K  +   R TPS +M HAD HEMEV++
Subjt:  MGKCGEN----------QQNYENPTKVQRKPIKVKYISSPMMIKASNAAEFRAIVQQLTGVDSGGSVRCRRSHKSAASSGRSTPSFSMLHAD-HEMEVVE

Query:  FPND--MSSSLLELNDGYF----------GSFMGFQSPCLF
        F +D  M S L     G F           + M FQS C F
Subjt:  FPND--MSSSLLELNDGYF----------GSFMGFQSPCLF

XP_021282108.1 uncharacterized protein LOC110414990 [Herrania umbratica]5.0e-0940.46Show/hide
Query:  MGKCGENQ-QNYENPTKVQRKPIKVKYISSPMMIKASNAAEFRAIVQQLTGVDSGGSVRCRRSHKSAASSGRSTPSFSMLHADHEMEVVE-------FPN
        MGK  +++    +NPTK ++ PIK+KYISSPMM+KASNA EFRAIVQ+LTG +S        S+        +    S  H D     V+       F +
Subjt:  MGKCGENQ-QNYENPTKVQRKPIKVKYISSPMMIKASNAAEFRAIVQQLTGVDSGGSVRCRRSHKSAASSGRSTPSFSMLHADHEMEVVE-------FPN

Query:  DMSSSLLELNDGYF-----GSFMGFQSPCLF
        DMSS  LE ++G+       +  GFQSP +F
Subjt:  DMSSSLLELNDGYF-----GSFMGFQSPCLF

XP_039063993.1 uncharacterized protein LOC120208953 [Hibiscus syriacus]1.2e-1045.13Show/hide
Query:  ENPTKVQRKPIKVKYISSPMMIKASNAAEFRAIVQQLTGVDSGGSVRCRRSHKSAASSGRSTPSFSMLHADHEMEVVEFPNDMSSSLLELND------GY
        + PTK ++ PIK++YISSP+M+KA N AEFRA+VQQLTG +S   +R  RS    A+  R  P+F         +   FP DMSS  LEL D      G 
Subjt:  ENPTKVQRKPIKVKYISSPMMIKASNAAEFRAIVQQLTGVDSGGSVRCRRSHKSAASSGRSTPSFSMLHADHEMEVVEFPNDMSSSLLELND------GY

Query:  FGSFMGFQSPCLF
          + +GFQSP +F
Subjt:  FGSFMGFQSPCLF

TrEMBL top hitse value%identityAlignment
A0A0A0LIA7 VQ domain-containing protein2.3e-2054.61Show/hide
Query:  MGKCGEN----------QQNYENPTKVQRKPIKVKYISSPMMIKASNAAEFRAIVQQLTGVDSGGSVRCRRSHKSAASSGRSTPSFSMLHAD-HEMEVVE
        MGKCGEN          Q   +NPTKVQRKPIKVKYISSPMMIKASNA EFRAIVQQLTG DS    R RR+ K  +   R TPS +M HAD HEMEV++
Subjt:  MGKCGEN----------QQNYENPTKVQRKPIKVKYISSPMMIKASNAAEFRAIVQQLTGVDSGGSVRCRRSHKSAASSGRSTPSFSMLHAD-HEMEVVE

Query:  FPND--MSSSLLELNDGYF----------GSFMGFQSPCLF
        F +D  M S L     G F           + M FQS C F
Subjt:  FPND--MSSSLLELNDGYF----------GSFMGFQSPCLF

A0A2C9VHQ0 VQ domain-containing protein4.6e-0841.59Show/hide
Query:  ENPTKVQRKPIKVKYISSPMMIKASNAAEFRAIVQQLTGVDSGGSVRCRRSHKSAASSGRSTPSFSMLHADHE-MEVVEFPNDMSSSLLELNDGYF----
        + P+K ++KP+KV YIS+P M++A+NA+EFRAIVQ+LTG DS         + + AS          L  D E  + + F    SSS LE+ND +F    
Subjt:  ENPTKVQRKPIKVKYISSPMMIKASNAAEFRAIVQQLTGVDSGGSVRCRRSHKSAASSGRSTPSFSMLHADHE-MEVVEFPNDMSSSLLELNDGYF----

Query:  -GSFMGFQSPCLF
          SF  FQS C F
Subjt:  -GSFMGFQSPCLF

A0A2P5BBD6 VQ motif containing protein1.3e-0764.58Show/hide
Query:  ENQQNYENPTKVQRKPIKVKYISSPMMIKASNAAEFRAIVQQLTGVDS
        EN    + P K ++KPIK+KYISSPMM++A NA+EFRAIVQQLTG +S
Subjt:  ENQQNYENPTKVQRKPIKVKYISSPMMIKASNAAEFRAIVQQLTGVDS

A0A5A7V7M1 VQ domain-containing protein1.4e-0958.9Show/hide
Query:  MMIKASNAAEFRAIVQQLTGVDSGGSVRCRRSHKSAASSGRSTPSFSMLHADHEMEVVEFPNDMSSSLLELND
        MMIKAS+A EFRAIVQQLTG DS  +   RR+ KS +   R TPS SM HAD EMEV++F +D  +SLL+ +D
Subjt:  MMIKASNAAEFRAIVQQLTGVDSGGSVRCRRSHKSAASSGRSTPSFSMLHADHEMEVVEFPNDMSSSLLELND

A0A6J1A533 uncharacterized protein LOC1104149902.4e-0940.46Show/hide
Query:  MGKCGENQ-QNYENPTKVQRKPIKVKYISSPMMIKASNAAEFRAIVQQLTGVDSGGSVRCRRSHKSAASSGRSTPSFSMLHADHEMEVVE-------FPN
        MGK  +++    +NPTK ++ PIK+KYISSPMM+KASNA EFRAIVQ+LTG +S        S+        +    S  H D     V+       F +
Subjt:  MGKCGENQ-QNYENPTKVQRKPIKVKYISSPMMIKASNAAEFRAIVQQLTGVDSGGSVRCRRSHKSAASSGRSTPSFSMLHADHEMEVVE-------FPN

Query:  DMSSSLLELNDGYF-----GSFMGFQSPCLF
        DMSS  LE ++G+       +  GFQSP +F
Subjt:  DMSSSLLELNDGYF-----GSFMGFQSPCLF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAAGTGTGGAGAGAATCAACAAAACTATGAAAACCCCACAAAAGTTCAGAGAAAACCCATCAAAGTAAAGTACATTTCAAGTCCAATGATGATCAAAGCAAGCAA
TGCAGCTGAGTTTAGAGCCATTGTTCAGCAACTCACTGGAGTTGACTCCGGCGGCTCGGTTCGTTGCCGGAGAAGCCACAAATCAGCTGCAAGCAGCGGTCGGAGTACTC
CGTCTTTTTCGATGTTGCATGCAGATCATGAAATGGAAGTTGTCGAGTTCCCGAACGACATGTCGTCGTCGCTGCTCGAACTCAATGATGGTTATTTTGGTAGCTTTATG
GGATTCCAATCTCCTTGTTTGTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAAAGTGTGGAGAGAATCAACAAAACTATGAAAACCCCACAAAAGTTCAGAGAAAACCCATCAAAGTAAAGTACATTTCAAGTCCAATGATGATCAAAGCAAGCAA
TGCAGCTGAGTTTAGAGCCATTGTTCAGCAACTCACTGGAGTTGACTCCGGCGGCTCGGTTCGTTGCCGGAGAAGCCACAAATCAGCTGCAAGCAGCGGTCGGAGTACTC
CGTCTTTTTCGATGTTGCATGCAGATCATGAAATGGAAGTTGTCGAGTTCCCGAACGACATGTCGTCGTCGCTGCTCGAACTCAATGATGGTTATTTTGGTAGCTTTATG
GGATTCCAATCTCCTTGTTTGTTTTGA
Protein sequenceShow/hide protein sequence
MGKCGENQQNYENPTKVQRKPIKVKYISSPMMIKASNAAEFRAIVQQLTGVDSGGSVRCRRSHKSAASSGRSTPSFSMLHADHEMEVVEFPNDMSSSLLELNDGYFGSFM
GFQSPCLF