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Sed0020267 (gene) of Chayote v1 genome

Gene IDSed0020267
OrganismSechium edule (Chayote v1)
Description6,7-dimethyl-8-ribityllumazine synthase
Genome locationLG01:6017128..6017930
RNA-Seq ExpressionSed0020267
SyntenySed0020267
Gene Ontology termsNA
InterPro domainsIPR025322 - Protein of unknown function DUF4228, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004149378.1 uncharacterized protein LOC101207122 [Cucumis sativus]5.4e-5879.87Show/hide
Query:  MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEILKANPNHVLSKPSSQGVVRRILILSPESDLKRGSIYFLIPATSLPEKKRNA---FKNP
        MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAG++LKANPNHVLSKPSSQGVVRRILILSPES+LKRGSIYFLIP+TSLPEKKRNA    K P
Subjt:  MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEILKANPNHVLSKPSSQGVVRRILILSPESDLKRGSIYFLIPATSLPEKKRNA---FKNP

Query:  SKKPKNFSAAA----ADGGAF----PSDKKPSRRDRRGGRVVVWRPHLESIRED
        S+K KN + AA    AD  ++     SDKKPSRR+RRG RV+VWRPHLESI ED
Subjt:  SKKPKNFSAAA----ADGGAF----PSDKKPSRRDRRGGRVVVWRPHLESIRED

XP_022944509.1 uncharacterized protein LOC111448946 [Cucurbita moschata]2.1e-5781.33Show/hide
Query:  MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEILKANPNHVLSKPSSQGVVRRILILSPESDLKRGSIYFLIPATSLPEKKRNA---FKNP
        MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGE+LKANPNHVL+KPSSQGVVRRILILSPES+LKRG+IYF+IPATS PEKKRNA    K P
Subjt:  MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEILKANPNHVLSKPSSQGVVRRILILSPESDLKRGSIYFLIPATSLPEKKRNA---FKNP

Query:  SKKPKNFSAAAADGGAF----PSDKKPSRRDRRGGRVVVWRPHLESIRED
        S K KN   A AD  ++     SDKKPSRRDRRG RVVVWRPHLESI ED
Subjt:  SKKPKNFSAAAADGGAF----PSDKKPSRRDRRGGRVVVWRPHLESIRED

XP_023007260.1 uncharacterized protein LOC111499799 [Cucurbita maxima]5.4e-5882.89Show/hide
Query:  MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEILKANPNHVLSKPSSQGVVRRILILSPESDLKRGSIYFLIPATSLPEKKRN---AFKNP
        MGNSLRCCLACVLPCGALDLIRIVHL+GHVEEIAHPITAGE+LKANPNHVLSKPSSQGVVRRILILSPES+LKRGSIYFLIPATSLPEKK+N    FKN 
Subjt:  MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEILKANPNHVLSKPSSQGVVRRILILSPESDLKRGSIYFLIPATSLPEKKRN---AFKNP

Query:  SKKPKNFSAAA-ADGGAF----PSDKKPSRRDRRGG-RVVVWRPHLESIRED
        SKK KN +AA   D  ++     SDKKPSRRDRRGG RVVVWRPHLESI ED
Subjt:  SKKPKNFSAAA-ADGGAF----PSDKKPSRRDRRGG-RVVVWRPHLESIRED

XP_023534513.1 uncharacterized protein LOC111796057 [Cucurbita pepo subsp. pepo]7.1e-5882.89Show/hide
Query:  MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEILKANPNHVLSKPSSQGVVRRILILSPESDLKRGSIYFLIPATSLPEKKR---NAFKNP
        MGNSLRCCLACVLPCGALDLIRIVHL+GHVEEIAHPITAGE+LKANPNHVLSKPSSQGVVRRILILSPES+LKRGSIYFLIPATSLPEKK+   N FKN 
Subjt:  MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEILKANPNHVLSKPSSQGVVRRILILSPESDLKRGSIYFLIPATSLPEKKR---NAFKNP

Query:  SKKPKNFSAAA-ADGGAF----PSDKKPSRRDRRGG-RVVVWRPHLESIRED
        SKK KN +AA   D  ++     SDKKPSRRDRRGG RVVVWRPHLESI ED
Subjt:  SKKPKNFSAAA-ADGGAF----PSDKKPSRRDRRGG-RVVVWRPHLESIRED

XP_038902054.1 uncharacterized protein LOC120088703 [Benincasa hispida]6.4e-5981.17Show/hide
Query:  MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEILKANPNHVLSKPSSQGVVRRILILSPESDLKRGSIYFLIPATSLPEKKRNA---FKNP
        MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAG++LKANPNHVLSKPSSQGVVRRILILSPES+LKRGSIYFLIPATSLPEKKRNA    K P
Subjt:  MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEILKANPNHVLSKPSSQGVVRRILILSPESDLKRGSIYFLIPATSLPEKKRNA---FKNP

Query:  SKKPKNFS----AAAADGGAF----PSDKKPSRRDRRGGRVVVWRPHLESIRED
        S+K K+ +    +AAADG ++     SDKKPSRR+RRG RVVVWRPHLESI ED
Subjt:  SKKPKNFS----AAAADGGAF----PSDKKPSRRDRRGGRVVVWRPHLESIRED

TrEMBL top hitse value%identityAlignment
A0A0A0KBY5 Uncharacterized protein2.6e-5879.87Show/hide
Query:  MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEILKANPNHVLSKPSSQGVVRRILILSPESDLKRGSIYFLIPATSLPEKKRNA---FKNP
        MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAG++LKANPNHVLSKPSSQGVVRRILILSPES+LKRGSIYFLIP+TSLPEKKRNA    K P
Subjt:  MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEILKANPNHVLSKPSSQGVVRRILILSPESDLKRGSIYFLIPATSLPEKKRNA---FKNP

Query:  SKKPKNFSAAA----ADGGAF----PSDKKPSRRDRRGGRVVVWRPHLESIRED
        S+K KN + AA    AD  ++     SDKKPSRR+RRG RV+VWRPHLESI ED
Subjt:  SKKPKNFSAAA----ADGGAF----PSDKKPSRRDRRGGRVVVWRPHLESIRED

A0A5A7UMR0 6,7-dimethyl-8-ribityllumazine synthase1.4e-5678.21Show/hide
Query:  MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEILKANPNHVLSKPSSQGVVRRILILSPESDLKRGSIYFLIPATSLPEKKRNA---FKNP
        MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEI HPITAG++LKANPNHVLSKPSSQGVVRRILILSPES+LKRGSIYFLIP+TSLPEKKRNA    K P
Subjt:  MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEILKANPNHVLSKPSSQGVVRRILILSPESDLKRGSIYFLIPATSLPEKKRNA---FKNP

Query:  SKKPKNFS-----AAAADGGAF----PSDKKPSRRDRR-GGRVVVWRPHLESIRED
        S+K KN +      AAAD  ++     SDKKPSRR+RR G RV+VWRPHLESI ED
Subjt:  SKKPKNFS-----AAAADGGAF----PSDKKPSRRDRR-GGRVVVWRPHLESIRED

A0A6J1FWT9 uncharacterized protein LOC1114489461.0e-5781.33Show/hide
Query:  MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEILKANPNHVLSKPSSQGVVRRILILSPESDLKRGSIYFLIPATSLPEKKRNA---FKNP
        MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGE+LKANPNHVL+KPSSQGVVRRILILSPES+LKRG+IYF+IPATS PEKKRNA    K P
Subjt:  MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEILKANPNHVLSKPSSQGVVRRILILSPESDLKRGSIYFLIPATSLPEKKRNA---FKNP

Query:  SKKPKNFSAAAADGGAF----PSDKKPSRRDRRGGRVVVWRPHLESIRED
        S K KN   A AD  ++     SDKKPSRRDRRG RVVVWRPHLESI ED
Subjt:  SKKPKNFSAAAADGGAF----PSDKKPSRRDRRGGRVVVWRPHLESIRED

A0A6J1G7P3 uncharacterized protein LOC1114515841.0e-5782.24Show/hide
Query:  MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEILKANPNHVLSKPSSQGVVRRILILSPESDLKRGSIYFLIPATSLPEKKR---NAFKNP
        MGNSLRCCLACVLPCGALDLIRIVHL+GHVEEIAHPITAGE+LKANPNHVLSKPSSQGVVRRILILSPES+LKRGSIYFLIPATSLPEKK+   N FKN 
Subjt:  MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEILKANPNHVLSKPSSQGVVRRILILSPESDLKRGSIYFLIPATSLPEKKR---NAFKNP

Query:  SKKPKNFSAAA-ADGGAF----PSDKKPSRRDRR-GGRVVVWRPHLESIRED
        SKK KN +AA   D  ++     SDKKPSRRDRR G RVVVWRPHLESI ED
Subjt:  SKKPKNFSAAA-ADGGAF----PSDKKPSRRDRR-GGRVVVWRPHLESIRED

A0A6J1L2H4 uncharacterized protein LOC1114997992.6e-5882.89Show/hide
Query:  MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEILKANPNHVLSKPSSQGVVRRILILSPESDLKRGSIYFLIPATSLPEKKRN---AFKNP
        MGNSLRCCLACVLPCGALDLIRIVHL+GHVEEIAHPITAGE+LKANPNHVLSKPSSQGVVRRILILSPES+LKRGSIYFLIPATSLPEKK+N    FKN 
Subjt:  MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEILKANPNHVLSKPSSQGVVRRILILSPESDLKRGSIYFLIPATSLPEKKRN---AFKNP

Query:  SKKPKNFSAAA-ADGGAF----PSDKKPSRRDRRGG-RVVVWRPHLESIRED
        SKK KN +AA   D  ++     SDKKPSRRDRRGG RVVVWRPHLESI ED
Subjt:  SKKPKNFSAAA-ADGGAF----PSDKKPSRRDRRGG-RVVVWRPHLESIRED

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G06980.1 unknown protein2.8e-4458.93Show/hide
Query:  MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEILKANPNHVLSKPSSQGVVRRILILSPESDLKRGSIYFLIPATSLPEKKRNAFKNPSKK
        MGNSLRCCLACVLPCGALDLIRIVHLNG+VEEI   ITAGEIL+ANPNHVLSKP SQGVVR+ILILSPES+LKRGSIYFLIP +SLPEKKR     P +K
Subjt:  MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEILKANPNHVLSKPSSQGVVRRILILSPESDLKRGSIYFLIPATSLPEKKRNAFKNPSKK

Query:  PKNFSAAAAD-------------------------GGAFPSDKKPSRRDRRGGRVVVWRPHLESIRED
         KN    +AD                           +   + +  RR  R   V  WRP L+SI ED
Subjt:  PKNFSAAAAD-------------------------GGAFPSDKKPSRRDRRGGRVVVWRPHLESIRED

AT1G29195.1 unknown protein1.1e-2942.02Show/hide
Query:  MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEILKANPNHVLSKPSS-------QGVV--RRILILSPESDLKRGSIYFLIPATSLPE---
        M  ++RCC+AC+LPCGALD+IRIVH NGHVEEI+  ITA EI+KA+P HVL KPSS       + V+   +I+I+ PE++L+RG IYFL+PAT   +   
Subjt:  MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEILKANPNHVLSKPSS-------QGVV--RRILILSPESDLKRGSIYFLIPATSLPE---

Query:  ---------------KKRNAFKNPSK--------------KPKNFSAAAADGG-----AFPSDKKPSRRDRRGGRVVVWRPHLESIRE
                       KKR+ ++   +              K KN+                S+K  +++DRR GRV VWRPHLESI E
Subjt:  ---------------KKRNAFKNPSK--------------KPKNFSAAAADGG-----AFPSDKKPSRRDRRGGRVVVWRPHLESIRE

AT2G30230.1 unknown protein6.9e-4356.57Show/hide
Query:  MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEILKANPNHVLSKPSSQGVVRRILILSPESDLKRGSIYFLIPATSLPEKKR-------NA
        MGNSLRCCLACVLPCGALDLIRIVHLNGHV+EI  P+TAGEIL+ANPNHVLSKP SQGVVR+ILILSPES+LKRGSIYFLIP TS+PEKK+         
Subjt:  MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEILKANPNHVLSKPSSQGVVRRILILSPESDLKRGSIYFLIPATSLPEKKR-------NA

Query:  FKNPSKKPKNFSA------AAADGGAFP-----------SDKKPS--------RRDRRGGRVVVWRPHLESIRED
         K P +   + ++         DG               S+K  S        R+  R   V  WRPHL+SI ED
Subjt:  FKNPSKKPKNFSA------AAADGGAFP-----------SDKKPS--------RRDRRGGRVVVWRPHLESIRED


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTAACAGTTTAAGGTGCTGTTTGGCTTGTGTTCTTCCCTGTGGAGCTCTAGATTTGATCCGAATCGTCCATTTGAACGGCCACGTGGAAGAAATCGCCCATCCGAT
CACCGCCGGCGAGATTCTAAAAGCCAACCCAAATCACGTTCTGAGTAAACCGTCTTCACAAGGAGTGGTTCGCCGGATTCTCATCCTCTCGCCGGAATCCGACCTCAAAA
GGGGCAGTATCTATTTCTTGATTCCGGCCACTTCTCTGCCTGAAAAGAAAAGAAACGCCTTCAAAAATCCTTCCAAAAAACCCAAGAATTTTTCCGCCGCCGCCGCAGAC
GGTGGCGCTTTTCCCTCCGATAAGAAACCGTCGCGGCGGGACCGCCGCGGCGGCCGGGTGGTTGTATGGCGGCCCCATTTAGAGAGCATCAGGGAAGACTGA
mRNA sequenceShow/hide mRNA sequence
CCCATTCACAAATATTCCGACTTTTACAGATTCGAAGTTGAATTTTTCTTTTATTTTTTTATTTTTTTCGAATTGAAAAATTCGTACTTTTTTTGGAAATGGGTAACAGT
TTAAGGTGCTGTTTGGCTTGTGTTCTTCCCTGTGGAGCTCTAGATTTGATCCGAATCGTCCATTTGAACGGCCACGTGGAAGAAATCGCCCATCCGATCACCGCCGGCGA
GATTCTAAAAGCCAACCCAAATCACGTTCTGAGTAAACCGTCTTCACAAGGAGTGGTTCGCCGGATTCTCATCCTCTCGCCGGAATCCGACCTCAAAAGGGGCAGTATCT
ATTTCTTGATTCCGGCCACTTCTCTGCCTGAAAAGAAAAGAAACGCCTTCAAAAATCCTTCCAAAAAACCCAAGAATTTTTCCGCCGCCGCCGCAGACGGTGGCGCTTTT
CCCTCCGATAAGAAACCGTCGCGGCGGGACCGCCGCGGCGGCCGGGTGGTTGTATGGCGGCCCCATTTAGAGAGCATCAGGGAAGACTGAAAAAAATGTAAACTTTATTT
TCGCCGGCGCCGGAATTGGGAAATGAACCGGAGCGGTAATTATGGGGTTATTTTTTTTTTTTACTGGCTGGTAAGTTTATTACCATACAGTTTTTATCCGGGTTGTGAAA
TGTTGAGAGGGAGTAAAAAAAAAAAATCAGTGACTCGGATTTTTTTTTTCATACGTTTTGTAAACGTTTGGAAATTGTATTTACAGTTTCTCGAGAAGTTGTAAATTGAA
TATATCGTTTTTTTTTCTTCTCCTTTTCCTTAA
Protein sequenceShow/hide protein sequence
MGNSLRCCLACVLPCGALDLIRIVHLNGHVEEIAHPITAGEILKANPNHVLSKPSSQGVVRRILILSPESDLKRGSIYFLIPATSLPEKKRNAFKNPSKKPKNFSAAAAD
GGAFPSDKKPSRRDRRGGRVVVWRPHLESIRED