; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0020335 (gene) of Chayote v1 genome

Gene IDSed0020335
OrganismSechium edule (Chayote v1)
DescriptionINO80 complex subunit C
Genome locationLG11:9055469..9062130
RNA-Seq ExpressionSed0020335
SyntenySed0020335
Gene Ontology termsGO:0006338 - chromatin remodeling (biological process)
GO:0006468 - protein phosphorylation (biological process)
GO:0031011 - Ino80 complex (cellular component)
GO:0004672 - protein kinase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR013272 - Vps72/YL1, C-terminal
IPR029525 - INO80 complex, subunit Ies6


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152811.1 INO80 complex subunit C isoform X2 [Cucumis sativus]4.9e-5586.99Show/hide
Query:  MEAEVMEAELVLSAHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAQNCHNCSPHEPNFGSIESPPSMHPCKKICDITGYEAPYYDPRSTLRYANADIFK
        ME+EV+EAELVL  HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQA+N HN SP EPN+ +IESPPSMHPCK+ICDITGYEAPYYDPR+TLRYANADIFK
Subjt:  MEAEVMEAELVLSAHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAQNCHNCSPHEPNFGSIESPPSMHPCKKICDITGYEAPYYDPRSTLRYANADIFK

Query:  FIRSLSNEYVQRYLTMRNAAVVL
         IRSL NEYVQRYL MRNAAVVL
Subjt:  FIRSLSNEYVQRYLTMRNAAVVL

XP_022144563.1 INO80 complex subunit C isoform X1 [Momordica charantia]6.3e-5586.18Show/hide
Query:  MEAEVMEAELVLSAHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAQNCHNCSPHEPNFGSIESPPSMHPCKKICDITGYEAPYYDPRSTLRYANADIFK
        ME EV+EAELVL  HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQA+N HN SP EPN+ +IESPPSMHPCKKICDITGYEAPYYDPR+TLRYANAD+FK
Subjt:  MEAEVMEAELVLSAHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAQNCHNCSPHEPNFGSIESPPSMHPCKKICDITGYEAPYYDPRSTLRYANADIFK

Query:  FIRSLSNEYVQRYLTMRNAAVVL
         IRSL NEYVQRYL MRNAAV+L
Subjt:  FIRSLSNEYVQRYLTMRNAAVVL

XP_022937916.1 INO80 complex subunit C isoform X1 [Cucurbita moschata]2.4e-5486.99Show/hide
Query:  MEAEVMEAELVLSAHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAQNCHNCSPHEPNFGSIESPPSMHPCKKICDITGYEAPYYDPRSTLRYANADIFK
        ME EV+EAELVL  HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQA+N HN S  EPN+ +IESPPSMHPCKKICDITGYEAPYYDPR+TLRYANADIFK
Subjt:  MEAEVMEAELVLSAHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAQNCHNCSPHEPNFGSIESPPSMHPCKKICDITGYEAPYYDPRSTLRYANADIFK

Query:  FIRSLSNEYVQRYLTMRNAAVVL
         IRSL NEYVQRYL MRNAAVVL
Subjt:  FIRSLSNEYVQRYLTMRNAAVVL

XP_031736376.1 INO80 complex subunit C isoform X1 [Cucumis sativus]4.9e-5586.99Show/hide
Query:  MEAEVMEAELVLSAHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAQNCHNCSPHEPNFGSIESPPSMHPCKKICDITGYEAPYYDPRSTLRYANADIFK
        ME+EV+EAELVL  HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQA+N HN SP EPN+ +IESPPSMHPCK+ICDITGYEAPYYDPR+TLRYANADIFK
Subjt:  MEAEVMEAELVLSAHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAQNCHNCSPHEPNFGSIESPPSMHPCKKICDITGYEAPYYDPRSTLRYANADIFK

Query:  FIRSLSNEYVQRYLTMRNAAVVL
         IRSL NEYVQRYL MRNAAVVL
Subjt:  FIRSLSNEYVQRYLTMRNAAVVL

XP_038889510.1 INO80 complex subunit C isoform X1 [Benincasa hispida]8.3e-5586.99Show/hide
Query:  MEAEVMEAELVLSAHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAQNCHNCSPHEPNFGSIESPPSMHPCKKICDITGYEAPYYDPRSTLRYANADIFK
        ME EV+EAELVL  HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQA+N HN SP EPN+ +IESPPSMHPCK+ICDITGYEAPYYDPR+TLRYANADIFK
Subjt:  MEAEVMEAELVLSAHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAQNCHNCSPHEPNFGSIESPPSMHPCKKICDITGYEAPYYDPRSTLRYANADIFK

Query:  FIRSLSNEYVQRYLTMRNAAVVL
         IRSL NEYVQRYL MRNAAVVL
Subjt:  FIRSLSNEYVQRYLTMRNAAVVL

TrEMBL top hitse value%identityAlignment
A0A0A0LJN6 YL1_C domain-containing protein2.4e-5586.99Show/hide
Query:  MEAEVMEAELVLSAHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAQNCHNCSPHEPNFGSIESPPSMHPCKKICDITGYEAPYYDPRSTLRYANADIFK
        ME+EV+EAELVL  HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQA+N HN SP EPN+ +IESPPSMHPCK+ICDITGYEAPYYDPR+TLRYANADIFK
Subjt:  MEAEVMEAELVLSAHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAQNCHNCSPHEPNFGSIESPPSMHPCKKICDITGYEAPYYDPRSTLRYANADIFK

Query:  FIRSLSNEYVQRYLTMRNAAVVL
         IRSL NEYVQRYL MRNAAVVL
Subjt:  FIRSLSNEYVQRYLTMRNAAVVL

A0A1S3B479 INO80 complex subunit C isoform X12.6e-5486.18Show/hide
Query:  MEAEVMEAELVLSAHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAQNCHNCSPHEPNFGSIESPPSMHPCKKICDITGYEAPYYDPRSTLRYANADIFK
        ME EV+EAELVL  HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQA+N +N SP EPN+ +IESPPSMHPCK+ICDITGYEAPYYDPR+TLRYANADIFK
Subjt:  MEAEVMEAELVLSAHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAQNCHNCSPHEPNFGSIESPPSMHPCKKICDITGYEAPYYDPRSTLRYANADIFK

Query:  FIRSLSNEYVQRYLTMRNAAVVL
         IRSL NEYVQRYL MRNAAVVL
Subjt:  FIRSLSNEYVQRYLTMRNAAVVL

A0A6J1CRZ9 INO80 complex subunit C isoform X13.1e-5586.18Show/hide
Query:  MEAEVMEAELVLSAHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAQNCHNCSPHEPNFGSIESPPSMHPCKKICDITGYEAPYYDPRSTLRYANADIFK
        ME EV+EAELVL  HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQA+N HN SP EPN+ +IESPPSMHPCKKICDITGYEAPYYDPR+TLRYANAD+FK
Subjt:  MEAEVMEAELVLSAHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAQNCHNCSPHEPNFGSIESPPSMHPCKKICDITGYEAPYYDPRSTLRYANADIFK

Query:  FIRSLSNEYVQRYLTMRNAAVVL
         IRSL NEYVQRYL MRNAAV+L
Subjt:  FIRSLSNEYVQRYLTMRNAAVVL

A0A6J1FBP9 INO80 complex subunit C isoform X11.2e-5486.99Show/hide
Query:  MEAEVMEAELVLSAHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAQNCHNCSPHEPNFGSIESPPSMHPCKKICDITGYEAPYYDPRSTLRYANADIFK
        ME EV+EAELVL  HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQA+N HN S  EPN+ +IESPPSMHPCKKICDITGYEAPYYDPR+TLRYANADIFK
Subjt:  MEAEVMEAELVLSAHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAQNCHNCSPHEPNFGSIESPPSMHPCKKICDITGYEAPYYDPRSTLRYANADIFK

Query:  FIRSLSNEYVQRYLTMRNAAVVL
         IRSL NEYVQRYL MRNAAVVL
Subjt:  FIRSLSNEYVQRYLTMRNAAVVL

A0A6J1HLV4 INO80 complex subunit C isoform X11.2e-5486.99Show/hide
Query:  MEAEVMEAELVLSAHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAQNCHNCSPHEPNFGSIESPPSMHPCKKICDITGYEAPYYDPRSTLRYANADIFK
        ME EV+EAELVL  HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQA+N HN S  EPN+ +IESPPSMHPCKKICDITGYEAPYYDPR+TLRYANADIFK
Subjt:  MEAEVMEAELVLSAHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAQNCHNCSPHEPNFGSIESPPSMHPCKKICDITGYEAPYYDPRSTLRYANADIFK

Query:  FIRSLSNEYVQRYLTMRNAAVVL
         IRSL NEYVQRYL MRNAAVVL
Subjt:  FIRSLSNEYVQRYLTMRNAAVVL

SwissProt top hitse value%identityAlignment
P32617 Chromatin-remodeling complex subunit IES61.8e-0742.19Show/hide
Query:  SIESPPSMHPCKKICDITGYEAPYYDPRSTLRYANADIFKFI-RSLSNEYVQRYLTMRNAAVVL
        S+E+PPS+ P KK CD+TG +  Y  P + +RY NA+I++ I + ++    Q YL +R A  VL
Subjt:  SIESPPSMHPCKKICDITGYEAPYYDPRSTLRYANADIFKFI-RSLSNEYVQRYLTMRNAAVVL

Q5BJY3 INO80 complex subunit C1.9e-1441.76Show/hide
Query:  RGRHWKHLKQILQAQNCHNCSPHEPNFGSIESPPSMHPCKKICDITGYEAPYYDPRSTLRYANADIFKFIRSLSNEYVQRYLTMRNAAVVL
        + R WK+LKQIL A+       ++PN+ SI++PPS  P KK  D++G  A Y DP+S LR++  + F +IR L ++ V  YLT+R A  ++
Subjt:  RGRHWKHLKQILQAQNCHNCSPHEPNFGSIESPPSMHPCKKICDITGYEAPYYDPRSTLRYANADIFKFIRSLSNEYVQRYLTMRNAAVVL

Q6PI98 INO80 complex subunit C2.1e-1339.56Show/hide
Query:  RGRHWKHLKQILQAQNCHNCSPHEPNFGSIESPPSMHPCKKICDITGYEAPYYDPRSTLRYANADIFKFIRSLSNEYVQRYLTMRNAAVVL
        + R WK+LKQIL ++       ++PN+ SI++PPS  P KK  D++G  A Y DP+S LR++  + F +IR L ++ V  YL +R A  ++
Subjt:  RGRHWKHLKQILQAQNCHNCSPHEPNFGSIESPPSMHPCKKICDITGYEAPYYDPRSTLRYANADIFKFIRSLSNEYVQRYLTMRNAAVVL

Q8BHA0 INO80 complex subunit C5.6e-1441.76Show/hide
Query:  RGRHWKHLKQILQAQNCHNCSPHEPNFGSIESPPSMHPCKKICDITGYEAPYYDPRSTLRYANADIFKFIRSLSNEYVQRYLTMRNAAVVL
        + R WK+LKQIL A+       ++PN+ SI++PPS  P KK  DI+G  A Y DP+S LR++  + F +IR L ++ V  YL +R A  ++
Subjt:  RGRHWKHLKQILQAQNCHNCSPHEPNFGSIESPPSMHPCKKICDITGYEAPYYDPRSTLRYANADIFKFIRSLSNEYVQRYLTMRNAAVVL

Q9UTE8 Chromatin-remodeling complex subunit ies66.9e-1240.62Show/hide
Query:  PKGQSRGRHWKHLKQILQAQNCHNCSPHEPNFGSIESPPSMHPCKKICDITGYEAPYYDPRSTLRYANADIFKFIRSLSNEYVQRYLTMRNAAVVL
        P  +++ R  ++L+QI+Q     N  P + ++ SIE+PPS+ P  K CD+TG  A Y DP++ LRY N +I+  IR L +   Q YL +R++ VVL
Subjt:  PKGQSRGRHWKHLKQILQAQNCHNCSPHEPNFGSIESPPSMHPCKKICDITGYEAPYYDPRSTLRYANADIFKFIRSLSNEYVQRYLTMRNAAVVL

Arabidopsis top hitse value%identityAlignment
AT4G38495.1 CONTAINS InterPro DOMAIN/s: YL1 nuclear, C-terminal (InterPro:IPR013272); Has 279 Blast hits to 279 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 133; Plants - 35; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).1.2e-4061.79Show/hide
Query:  MEAEVMEAELVLSAHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAQNCHNCSPHEPNFGSIESPPSMHPCKKICDITGYEAPYYDPRSTLRYANADIFK
        ME E+MEA++V+++ L+FK+ Q YEKYPK QS  R WKHLKQILQA+N  +  P  P + +IESPPS  PCK++CDITGYEAPY DPR+ LRYANA +F+
Subjt:  MEAEVMEAELVLSAHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAQNCHNCSPHEPNFGSIESPPSMHPCKKICDITGYEAPYYDPRSTLRYANADIFK

Query:  FIRSLSNEYVQRYLTMRNAAVVL
         +RSLS++ V +YL++RNAAVVL
Subjt:  FIRSLSNEYVQRYLTMRNAAVVL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGCGGAGGTGATGGAAGCAGAGTTAGTGTTGTCGGCTCACCTGAACTTCAAACGAATTCAAATGTACGAAAAGTACCCGAAAGGCCAATCTAGAGGCAGGCACTG
GAAGCATCTTAAGCAAATTCTTCAAGCCCAGAATTGTCACAACTGCTCCCCTCATGAACCCAACTTTGGAAGTATTGAGTCACCTCCCTCAATGCATCCATGCAAGAAAA
TCTGTGATATAACAGGATATGAGGCACCATATTACGATCCCAGGTCTACTCTTCGATACGCAAATGCAGATATCTTCAAGTTCATAAGATCACTTTCTAATGAGTACGTT
CAGAGGTATTTGACCATGAGAAATGCAGCAGTAGTTTTAAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGCGGAGGTGATGGAAGCAGAGTTAGTGTTGTCGGCTCACCTGAACTTCAAACGAATTCAAATGTACGAAAAGTACCCGAAAGGCCAATCTAGAGGCAGGCACTG
GAAGCATCTTAAGCAAATTCTTCAAGCCCAGAATTGTCACAACTGCTCCCCTCATGAACCCAACTTTGGAAGTATTGAGTCACCTCCCTCAATGCATCCATGCAAGAAAA
TCTGTGATATAACAGGATATGAGGCACCATATTACGATCCCAGGTCTACTCTTCGATACGCAAATGCAGATATCTTCAAGTTCATAAGATCACTTTCTAATGAGTACGTT
CAGAGGTATTTGACCATGAGAAATGCAGCAGTAGTTTTAAGTTGA
Protein sequenceShow/hide protein sequence
MEAEVMEAELVLSAHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAQNCHNCSPHEPNFGSIESPPSMHPCKKICDITGYEAPYYDPRSTLRYANADIFKFIRSLSNEYV
QRYLTMRNAAVVLS