; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0020429 (gene) of Chayote v1 genome

Gene IDSed0020429
OrganismSechium edule (Chayote v1)
DescriptionRibonuclease MC
Genome locationLG11:19884024..19884668
RNA-Seq ExpressionSed0020429
SyntenySed0020429
Gene Ontology termsGO:0016070 - RNA metabolic process (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0033897 - ribonuclease T2 activity (molecular function)
InterPro domainsIPR001568 - Ribonuclease T2-like
IPR033130 - Ribonuclease T2, His active site 2
IPR036430 - Ribonuclease T2-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
1J1G_A Crystal structure of the RNase MC1 mutant N71S in complex with 5'-GMP [Momordica charantia]1.8e-3554.89Show/hide
Query:  ISSKTTNLNNFWPDIIKGNNQNFWSHEWTKHGTCSEPPFDQAAYFQLALDHRFQFDIITALKSHGAGPNGQKKATQAVKSFIKQAFGKFPGLR-------
        IS   + LN  WP +++ NNQ FWSHEWTKHGTCSE  F+QAAYF+LA+D R  +DII AL+ H AGPNG+ K+ QA+K F+K  FGKFPGLR       
Subjt:  ISSKTTNLNNFWPDIIKGNNQNFWSHEWTKHGTCSEPPFDQAAYFQLALDHRFQFDIITALKSHGAGPNGQKKATQAVKSFIKQAFGKFPGLR-------

Query:  -------FVLCFDKDAVTLIDCQKDNCGADFYF
                V CF +D  TLIDC +D CGA+F F
Subjt:  -------FVLCFDKDAVTLIDCQKDNCGADFYF

1UCG_A Crystal structure of Ribonuclease MC1 N71T mutant [Momordica charantia]2.3e-3554.89Show/hide
Query:  ISSKTTNLNNFWPDIIKGNNQNFWSHEWTKHGTCSEPPFDQAAYFQLALDHRFQFDIITALKSHGAGPNGQKKATQAVKSFIKQAFGKFPGLR-------
        IS   + LN  WP +++ NNQ FWSHEWTKHGTCSE  F+QAAYF+LA+D R  +DII AL+ H AGPNG+ K+ QA+K F+K  FGKFPGLR       
Subjt:  ISSKTTNLNNFWPDIIKGNNQNFWSHEWTKHGTCSEPPFDQAAYFQLALDHRFQFDIITALKSHGAGPNGQKKATQAVKSFIKQAFGKFPGLR-------

Query:  -------FVLCFDKDAVTLIDCQKDNCGADFYF
                V CF +D  TLIDC +D CGA+F F
Subjt:  -------FVLCFDKDAVTLIDCQKDNCGADFYF

AKU36755.1 ribonuclease MC1, partial [synthetic construct]1.3e-3554.89Show/hide
Query:  ISSKTTNLNNFWPDIIKGNNQNFWSHEWTKHGTCSEPPFDQAAYFQLALDHRFQFDIITALKSHGAGPNGQKKATQAVKSFIKQAFGKFPGLR-------
        IS   + LN  WP++++ NNQ FWSHEWTKHGTCSE  F+QAAYF+LA+D R  +DII AL+ H AGPNG+ K+ QA+K F+K  FGKFPGLR       
Subjt:  ISSKTTNLNNFWPDIIKGNNQNFWSHEWTKHGTCSEPPFDQAAYFQLALDHRFQFDIITALKSHGAGPNGQKKATQAVKSFIKQAFGKFPGLR-------

Query:  -------FVLCFDKDAVTLIDCQKDNCGADFYF
                V CF +D  TLIDC +D CGA+F F
Subjt:  -------FVLCFDKDAVTLIDCQKDNCGADFYF

P23540.1 RecName: Full=Ribonuclease MC; Short=RNase MC [Momordica charantia]1.3e-3554.89Show/hide
Query:  ISSKTTNLNNFWPDIIKGNNQNFWSHEWTKHGTCSEPPFDQAAYFQLALDHRFQFDIITALKSHGAGPNGQKKATQAVKSFIKQAFGKFPGLR-------
        IS   + LN  WP++++ NNQ FWSHEWTKHGTCSE  F+QAAYF+LA+D R  +DII AL+ H AGPNG+ K+ QA+K F+K  FGKFPGLR       
Subjt:  ISSKTTNLNNFWPDIIKGNNQNFWSHEWTKHGTCSEPPFDQAAYFQLALDHRFQFDIITALKSHGAGPNGQKKATQAVKSFIKQAFGKFPGLR-------

Query:  -------FVLCFDKDAVTLIDCQKDNCGADFYF
                V CF +D  TLIDC +D CGA+F F
Subjt:  -------FVLCFDKDAVTLIDCQKDNCGADFYF

XP_022152675.1 ribonuclease MC [Momordica charantia]4.9e-3842.33Show/hide
Query:  MAAPKREVTIAFAFAIFSLIGYSEAFDSF-----------------------------------------------------ISSKTTNLNNFWPDIIKG
        M  PKREV I+ A  IFSL+  S+AFDSF                                                     IS   + LN  WP++++ 
Subjt:  MAAPKREVTIAFAFAIFSLIGYSEAFDSF-----------------------------------------------------ISSKTTNLNNFWPDIIKG

Query:  NNQNFWSHEWTKHGTCSEPPFDQAAYFQLALDHRFQFDIITALKSHGAGPNGQKKATQAVKSFIKQAFGKFPGLR--------------FVLCFDKDAVT
        NNQ FWSHEWTKHGTCSE  F+QAAYF+LA+D R  +DII AL+ H AGPNG+ K+ QA+K F+K  FGKFPGLR               V CF +D  T
Subjt:  NNQNFWSHEWTKHGTCSEPPFDQAAYFQLALDHRFQFDIITALKSHGAGPNGQKKATQAVKSFIKQAFGKFPGLR--------------FVLCFDKDAVT

Query:  LIDCQKDNCGADFYF
        LIDC +D CGA+F F
Subjt:  LIDCQKDNCGADFYF

TrEMBL top hitse value%identityAlignment
A0A0A0LC37 Ribonuclease T(2)1.8e-2544.78Show/hide
Query:  ISSKTTNLNNFWPDIIKGNNQNFWSHEWTKHGTCSEPPFDQAAYFQLALDHRFQFDIITALKSHGAGPNGQKKATQAVKSFIKQAFGKFPGLR-------
        I+    +LN  WP+++ GNN+ FW HEW KHG CSE  FD+A YFQ A++ R   D+++ L++ G GPNG  KA Q V++ I   FGK P LR       
Subjt:  ISSKTTNLNNFWPDIIKGNNQNFWSHEWTKHGTCSEPPFDQAAYFQLALDHRFQFDIITALKSHGAGPNGQKKATQAVKSFIKQAFGKFPGLR-------

Query:  ------FVLCFDKDAVTLIDCQK--DNCGADFYF
               V+CFD D VTLI+C K   NC   F F
Subjt:  ------FVLCFDKDAVTLIDCQK--DNCGADFYF

A0A5D3DQ69 Ribonuclease MC-like2.0e-2443.28Show/hide
Query:  ISSKTTNLNNFWPDIIKGNNQNFWSHEWTKHGTCSEPPFDQAAYFQLALDHRFQFDIITALKSHGAGPNGQKKATQAVKSFIKQAFGKFPGLR-------
        ISS T  L+  WPD+I G +Q FW HEW KHGTCSE  F    YFQ+A++ +++ D++ A++  G  PN  KKA Q V+  I  A+  +P LR       
Subjt:  ISSKTTNLNNFWPDIIKGNNQNFWSHEWTKHGTCSEPPFDQAAYFQLALDHRFQFDIITALKSHGAGPNGQKKATQAVKSFIKQAFGKFPGLR-------

Query:  ------FVLCFDKDAVTLIDC--QKDNCGADFYF
               V+CF  D VTL++C   K  CGADF F
Subjt:  ------FVLCFDKDAVTLIDC--QKDNCGADFYF

A0A6J1CKH7 Ribonuclease T(2)4.0e-2545.11Show/hide
Query:  ISSKTTNLNNFWPDIIKGNNQNFWSHEWTKHGTCSEPPFDQAAYFQLALDHRFQFDIITALKSHGAGPNGQKKATQAVKSFIKQAFGKFPGLR-------
        +S    +LN  WP++I GNN+ FW HEW KHG CSE  FD  AYFQ+A++ R   D++ AL+  G  PNG+ K+ Q V+S I+  FGK P LR       
Subjt:  ISSKTTNLNNFWPDIIKGNNQNFWSHEWTKHGTCSEPPFDQAAYFQLALDHRFQFDIITALKSHGAGPNGQKKATQAVKSFIKQAFGKFPGLR-------

Query:  -----FVLCFDKDAVTLIDCQ--KDNCGADFYF
              V+CFD D VTLI+C     NC   F F
Subjt:  -----FVLCFDKDAVTLIDCQ--KDNCGADFYF

A0A6J1DEL7 Ribonuclease T(2)2.4e-3842.33Show/hide
Query:  MAAPKREVTIAFAFAIFSLIGYSEAFDSF-----------------------------------------------------ISSKTTNLNNFWPDIIKG
        M  PKREV I+ A  IFSL+  S+AFDSF                                                     IS   + LN  WP++++ 
Subjt:  MAAPKREVTIAFAFAIFSLIGYSEAFDSF-----------------------------------------------------ISSKTTNLNNFWPDIIKG

Query:  NNQNFWSHEWTKHGTCSEPPFDQAAYFQLALDHRFQFDIITALKSHGAGPNGQKKATQAVKSFIKQAFGKFPGLR--------------FVLCFDKDAVT
        NNQ FWSHEWTKHGTCSE  F+QAAYF+LA+D R  +DII AL+ H AGPNG+ K+ QA+K F+K  FGKFPGLR               V CF +D  T
Subjt:  NNQNFWSHEWTKHGTCSEPPFDQAAYFQLALDHRFQFDIITALKSHGAGPNGQKKATQAVKSFIKQAFGKFPGLR--------------FVLCFDKDAVT

Query:  LIDCQKDNCGADFYF
        LIDC +D CGA+F F
Subjt:  LIDCQKDNCGADFYF

A0A6J1DQN7 ribonuclease MC-like1.4e-2546.62Show/hide
Query:  ISSKTTNLNNFWPDIIKGNNQNFWSHEWTKHGTCSEPPFDQAAYFQLALDHRFQFDIITALKSHGAGPNGQKKATQAVKSFIKQAFGKFPGLR-------
        ISS  T+LN  WP++I G+N+ FWSHEW KHG CSE  F+  AYFQ+A++ R   D++ ALK  G  PNG  K+ Q V+S ++  FGK P LR       
Subjt:  ISSKTTNLNNFWPDIIKGNNQNFWSHEWTKHGTCSEPPFDQAAYFQLALDHRFQFDIITALKSHGAGPNGQKKATQAVKSFIKQAFGKFPGLR-------

Query:  -----FVLCFDKDAVTLIDCQ--KDNCGADFYF
              V+CFD D VTLI+C     NC   F F
Subjt:  -----FVLCFDKDAVTLIDCQ--KDNCGADFYF

SwissProt top hitse value%identityAlignment
P04007 Ribonuclease S-21.1e-1333.85Show/hide
Query:  SEAFDSFISSKTTN-LNNFWPDIIKG-----NNQNFWSHEWTKHGTCSEPPFDQAAYFQLALDHRFQFDIITALKSHGAGPNGQKKATQAVKSFIKQAFG
        S+ ++ F   K  N L+  WPD+ K      + Q FW  E+ KHGTC    FD+  YF LA+  R +FD++++L++HG    G     Q + + IK   G
Subjt:  SEAFDSFISSKTTN-LNNFWPDIIKG-----NNQNFWSHEWTKHGTCSEPPFDQAAYFQLALDHRFQFDIITALKSHGAGPNGQKKATQAVKSFIKQAFG

Query:  KFPGL---------RFVLCFDKDAVTLIDC
         FP L            +CFD+    +IDC
Subjt:  KFPGL---------RFVLCFDKDAVTLIDC

P23540 Ribonuclease MC1.8e-3854.89Show/hide
Query:  ISSKTTNLNNFWPDIIKGNNQNFWSHEWTKHGTCSEPPFDQAAYFQLALDHRFQFDIITALKSHGAGPNGQKKATQAVKSFIKQAFGKFPGLR-------
        IS   + LN  WP++++ NNQ FWSHEWTKHGTCSE  F+QAAYF+LA+D R  +DII AL+ H AGPNG+ K+ QA+K F+K  FGKFPGLR       
Subjt:  ISSKTTNLNNFWPDIIKGNNQNFWSHEWTKHGTCSEPPFDQAAYFQLALDHRFQFDIITALKSHGAGPNGQKKATQAVKSFIKQAFGKFPGLR-------

Query:  -------FVLCFDKDAVTLIDCQKDNCGADFYF
                V CF +D  TLIDC +D CGA+F F
Subjt:  -------FVLCFDKDAVTLIDCQKDNCGADFYF

P42813 Ribonuclease 13.2e-1633.1Show/hide
Query:  SEAFD-SFISSKTTNLNNFWPDII--KGNNQNFWSHEWTKHGTCSEPPFDQAAYFQLALDHRFQFDIITALKSHGAGPNGQKKATQAVKSFIKQAFGKFP
        S+ FD S IS   T++   WP +    G+ + FW HEW KHGTCSE   DQ  YFQ AL+ + + +++ AL   G  P+G+  + ++++  IK++ G  P
Subjt:  SEAFD-SFISSKTTNLNNFWPDII--KGNNQNFWSHEWTKHGTCSEPPFDQAAYFQLALDHRFQFDIITALKSHGAGPNGQKKATQAVKSFIKQAFGKFP

Query:  GL-------------RFVLCFDKDAVTLIDC---QKDNCGADFYF
         +             +  LC D+    LI+C       CGA+  F
Subjt:  GL-------------RFVLCFDKDAVTLIDC---QKDNCGADFYF

P80022 Extracellular ribonuclease LE2.8e-1230.71Show/hide
Query:  SFISSKTTNLNNFWPDII--KGNNQNFWSHEWTKHGTCSEPPF-DQAAYFQLALDHRFQFDIITALKSHGAGPNGQKKATQAVKSFIKQAFGKFPGL---
        S IS   +++   WP +    G+   FWSHEW KHGTC+E    +Q AYF+ ALD + Q D+++ L+     P+G+      +++ IK A G  P +   
Subjt:  SFISSKTTNLNNFWPDII--KGNNQNFWSHEWTKHGTCSEPPF-DQAAYFQLALDHRFQFDIITALKSHGAGPNGQKKATQAVKSFIKQAFGKFPGL---

Query:  ----------RFVLCFDKDAVTLIDC---QKDNCGADFYF
                  +  +C D    +LI+C       CG    F
Subjt:  ----------RFVLCFDKDAVTLIDC---QKDNCGADFYF

Q40379 Ribonuclease S-61.1e-1337.84Show/hide
Query:  WPDIIKG-----NNQNFWSHEWTKHGTCSEPPFDQAAYFQLALDHRFQFDIITALKSHGAGPNGQKKATQAVKSFIKQAFGKFPGLR--------FV-LC
        WPD+I+        QNFW  E+ KHGTC    ++Q  YF+LA+  + +FD++T+LK+HG    G K   Q + + IK     +P L         FV +C
Subjt:  WPDIIKG-----NNQNFWSHEWTKHGTCSEPPFDQAAYFQLALDHRFQFDIITALKSHGAGPNGQKKATQAVKSFIKQAFGKFPGLR--------FV-LC

Query:  FDKDAVTLIDC
        FD  A  +IDC
Subjt:  FDKDAVTLIDC

Arabidopsis top hitse value%identityAlignment
AT1G14210.1 Ribonuclease T2 family protein7.2e-1131.07Show/hide
Query:  NNQNFWSHEWTKHGTCSEPPFDQAAYFQLALDHRFQFDIITALKSHGAGPNGQKKATQAVKSFIKQAFGKFPGL-------------RFVLCFDKDAVTL
        N  N W HEW KHGTC +  FDQ +YF+  L  + +  ++  L   G  PN    +   +K+ IK A G  PG+             +  +C D  A   
Subjt:  NNQNFWSHEWTKHGTCSEPPFDQAAYFQLALDHRFQFDIITALKSHGAGPNGQKKATQAVKSFIKQAFGKFPGL-------------RFVLCFDKDAVTL

Query:  IDC
        ++C
Subjt:  IDC

AT1G14220.1 Ribonuclease T2 family protein7.6e-1331.2Show/hide
Query:  SFISSKTTNLNNFWPDIIKGNNQ--NFWSHEWTKHGTCSEPPFDQAAYFQLALDHRFQFDIITALKSHGAGPNGQKKATQAVKSFIKQAFGKFPGL----
        S IS   ++L   WP +   +N+  NFW HEW KHGTCSE   DQ  YF+ AL  + + +++  LK+ G  P+        + + IK   G  PG+    
Subjt:  SFISSKTTNLNNFWPDIIKGNNQ--NFWSHEWTKHGTCSEPPFDQAAYFQLALDHRFQFDIITALKSHGAGPNGQKKATQAVKSFIKQAFGKFPGL----

Query:  ---------RFVLCFDKDAVTLIDC
                 +  +C D      I+C
Subjt:  ---------RFVLCFDKDAVTLIDC

AT1G26820.1 ribonuclease 33.8e-1230.16Show/hide
Query:  DSFISSKTTNLNNFWPDIIKGNN--QNFWSHEWTKHGTCSEPPFDQAAYFQLALDHRFQFDIITALKSHGAGPNGQKKATQAVKSFIKQAFGKFPGL---
        D  +S   ++L   WP +   +N    FW+HEW KHGTC+E   DQ  YF+  L  + + +++ AL + G  P+ +    + +++ IKQ  G  PG+   
Subjt:  DSFISSKTTNLNNFWPDIIKGNN--QNFWSHEWTKHGTCSEPPFDQAAYFQLALDHRFQFDIITALKSHGAGPNGQKKATQAVKSFIKQAFGKFPGL---

Query:  ----------RFVLCFDKDAVTLIDC
                  +  LC D  A   I+C
Subjt:  ----------RFVLCFDKDAVTLIDC

AT2G02990.1 ribonuclease 12.3e-1733.1Show/hide
Query:  SEAFD-SFISSKTTNLNNFWPDII--KGNNQNFWSHEWTKHGTCSEPPFDQAAYFQLALDHRFQFDIITALKSHGAGPNGQKKATQAVKSFIKQAFGKFP
        S+ FD S IS   T++   WP +    G+ + FW HEW KHGTCSE   DQ  YFQ AL+ + + +++ AL   G  P+G+  + ++++  IK++ G  P
Subjt:  SEAFD-SFISSKTTNLNNFWPDII--KGNNQNFWSHEWTKHGTCSEPPFDQAAYFQLALDHRFQFDIITALKSHGAGPNGQKKATQAVKSFIKQAFGKFP

Query:  GL-------------RFVLCFDKDAVTLIDC---QKDNCGADFYF
         +             +  LC D+    LI+C       CGA+  F
Subjt:  GL-------------RFVLCFDKDAVTLIDC---QKDNCGADFYF

AT2G39780.1 ribonuclease 27.4e-0829.66Show/hide
Query:  ISSKTTNLNNFWPDI-------IKGNNQNFWSHEWTKHGTCSEPPF-DQAAYFQLALDHRFQFDIITALKSHG-AGPNGQKKATQAVKSFIKQAFGKFPG
        IS+    L  +WP +         G   +FW HEW KHGTCS P F D+  YF   L+   + ++   L   G    N +K     + + I+ AF   P 
Subjt:  ISSKTTNLNNFWPDI-------IKGNNQNFWSHEWTKHGTCSEPPF-DQAAYFQLALDHRFQFDIITALKSHG-AGPNGQKKATQAVKSFIKQAFGKFPG

Query:  L--------RFVLCFDKD
        +           +CF KD
Subjt:  L--------RFVLCFDKD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCGCCAAAAAGAGAAGTGACCATTGCCTTTGCCTTCGCCATCTTTTCCCTGATAGGCTACTCTGAAGCTTTCGACTCGTTTATTTCTAGCAAGACGACCAACCT
GAACAATTTCTGGCCAGATATTATCAAAGGAAACAACCAAAACTTTTGGAGTCACGAATGGACGAAACATGGAACTTGTTCTGAGCCACCATTCGACCAGGCCGCATATT
TTCAATTGGCTTTGGACCATCGGTTTCAGTTCGACATTATAACAGCCCTAAAGTCTCATGGAGCTGGACCAAACGGCCAAAAGAAGGCAACCCAAGCAGTAAAATCATTC
ATAAAACAAGCCTTTGGGAAGTTTCCTGGGTTACGATTTGTGTTGTGCTTTGACAAAGATGCCGTCACTCTTATCGACTGCCAAAAGGATAATTGTGGTGCGGATTTCTA
CTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGCGCCAAAAAGAGAAGTGACCATTGCCTTTGCCTTCGCCATCTTTTCCCTGATAGGCTACTCTGAAGCTTTCGACTCGTTTATTTCTAGCAAGACGACCAACCT
GAACAATTTCTGGCCAGATATTATCAAAGGAAACAACCAAAACTTTTGGAGTCACGAATGGACGAAACATGGAACTTGTTCTGAGCCACCATTCGACCAGGCCGCATATT
TTCAATTGGCTTTGGACCATCGGTTTCAGTTCGACATTATAACAGCCCTAAAGTCTCATGGAGCTGGACCAAACGGCCAAAAGAAGGCAACCCAAGCAGTAAAATCATTC
ATAAAACAAGCCTTTGGGAAGTTTCCTGGGTTACGATTTGTGTTGTGCTTTGACAAAGATGCCGTCACTCTTATCGACTGCCAAAAGGATAATTGTGGTGCGGATTTCTA
CTTTTGA
Protein sequenceShow/hide protein sequence
MAAPKREVTIAFAFAIFSLIGYSEAFDSFISSKTTNLNNFWPDIIKGNNQNFWSHEWTKHGTCSEPPFDQAAYFQLALDHRFQFDIITALKSHGAGPNGQKKATQAVKSF
IKQAFGKFPGLRFVLCFDKDAVTLIDCQKDNCGADFYF