CuGenDBv2

Gene ID	Sed0020461
Organism	Sechium edule (Chayote v1)
Description	non-classical arabinogalactan protein 30
Genome location	LG07:41396476..41396996
RNA-Seq Expression	Sed0020461
Synteny	Sed0020461
Gene Ontology terms	GO:0016020 - membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6599980.1 Non-classical arabinogalactan protein 30, partial [Cucurbita argyrosperma subsp. sororia]

3.9e-76

84.94

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Query:  MATKNLLCLS-LLLLLHIAAADPTRPAYNPVAVAVEGMVYCQNCQKIGTWSLTGANPIAGAKISVICKNHNNQVMFYKVYETNKYGYFYAELVGYKMAHP
        MA K+LL LS LLLLLHIAAA+P RP   PVA+AVEGMVYCQNCQKIG+WSLTGA PIAGAKISVICKNHNNQV FYKVYETNKYGYFYAELVGYKM HP
Subjt:  MATKNLLCLS-LLLLLHIAAADPTRPAYNPVAVAVEGMVYCQNCQKIGTWSLTGANPIAGAKISVICKNHNNQVMFYKVYETNKYGYFYAELVGYKMAHP

Query:  VLDHPLQACKVKPVYSPRSECNLLTNLNYGLAGAPLRFEKKLVHGPKYRAAVYSAGPLAFHPDKCL
        VLDHPLQACKVKP+ SP S+C+LLTNLNYG+AGAPLR++KK V GPKYRAAVYSAGPLAFHP+KCL
Subjt:  VLDHPLQACKVKPVYSPRSECNLLTNLNYGLAGAPLRFEKKLVHGPKYRAAVYSAGPLAFHPDKCL

XP_022942759.1 non-classical arabinogalactan protein 30 [Cucurbita moschata]

1.5e-75

84.34

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Query:  MATKNLLCLS-LLLLLHIAAADPTRPAYNPVAVAVEGMVYCQNCQKIGTWSLTGANPIAGAKISVICKNHNNQVMFYKVYETNKYGYFYAELVGYKMAHP
        M  K+LL LS LLLLLHIAAA+P RP   PVA+AVEGMVYCQNCQKIG+WSLTGA PIAGAKISVICKNHNNQV FYKVYETNKYGYFYAELVGYKM HP
Subjt:  MATKNLLCLS-LLLLLHIAAADPTRPAYNPVAVAVEGMVYCQNCQKIGTWSLTGANPIAGAKISVICKNHNNQVMFYKVYETNKYGYFYAELVGYKMAHP

Query:  VLDHPLQACKVKPVYSPRSECNLLTNLNYGLAGAPLRFEKKLVHGPKYRAAVYSAGPLAFHPDKCL
        VLDHPLQACKVKP+ SP S+C+LLTNLNYG+AGAPLR++KK V GPKYRAAVYSAGPLAFHP+KCL
Subjt:  VLDHPLQACKVKPVYSPRSECNLLTNLNYGLAGAPLRFEKKLVHGPKYRAAVYSAGPLAFHPDKCL

XP_022996537.1 non-classical arabinogalactan protein 30 [Cucurbita maxima]

1.3e-74

83.73

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Query:  MATKNLLCLS-LLLLLHIAAADPTRPAYNPVAVAVEGMVYCQNCQKIGTWSLTGANPIAGAKISVICKNHNNQVMFYKVYETNKYGYFYAELVGYKMAHP
        MA K+LL LS LLLLLHIAAA+P RP   PVA+AVEGMVYCQNCQKIG+WSLTGA  IAGAKISVICKNHNNQV FYKVYET+KYGYFYAELVGYKM HP
Subjt:  MATKNLLCLS-LLLLLHIAAADPTRPAYNPVAVAVEGMVYCQNCQKIGTWSLTGANPIAGAKISVICKNHNNQVMFYKVYETNKYGYFYAELVGYKMAHP

Query:  VLDHPLQACKVKPVYSPRSECNLLTNLNYGLAGAPLRFEKKLVHGPKYRAAVYSAGPLAFHPDKCL
        VLDHPLQACKVKP+ SP S+C+LLTNLNYG+AGAPLR++KK V GPKYRAAVYSAGPLAFHP+KCL
Subjt:  VLDHPLQACKVKPVYSPRSECNLLTNLNYGLAGAPLRFEKKLVHGPKYRAAVYSAGPLAFHPDKCL

XP_023541968.1 non-classical arabinogalactan protein 30 [Cucurbita pepo subsp. pepo]

1.5e-75

84.34

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Query:  MATKNLLCLS-LLLLLHIAAADPTRPAYNPVAVAVEGMVYCQNCQKIGTWSLTGANPIAGAKISVICKNHNNQVMFYKVYETNKYGYFYAELVGYKMAHP
        MA K+LL LS LLLLLHIAAA+P RP   PVA+AVEGMVYCQNCQKIG+WSLTGA PIAGAKISVICKNHNNQV FYKVYETNKYGYFYAELVGYKM HP
Subjt:  MATKNLLCLS-LLLLLHIAAADPTRPAYNPVAVAVEGMVYCQNCQKIGTWSLTGANPIAGAKISVICKNHNNQVMFYKVYETNKYGYFYAELVGYKMAHP

Query:  VLDHPLQACKVKPVYSPRSECNLLTNLNYGLAGAPLRFEKKLVHGPKYRAAVYSAGPLAFHPDKCL
        VLDHPLQACKVKP+ SP  +C+LLTNLNYG+AGAPLR++KK V GPKYRAAVYSAGPLAFHP+KCL
Subjt:  VLDHPLQACKVKPVYSPRSECNLLTNLNYGLAGAPLRFEKKLVHGPKYRAAVYSAGPLAFHPDKCL

XP_038893345.1 non-classical arabinogalactan protein 30 [Benincasa hispida]

4.8e-74

83.13

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Query:  MATKNLLCLS-LLLLLHIAAADPTRPAYNPVAVAVEGMVYCQNCQKIGTWSLTGANPIAGAKISVICKNHNNQVMFYKVYETNKYGYFYAELVGYKMAHP
        M+ KNLL LS LLLLL IAAAD TRPAY P++VA+EG+VYCQ+CQK+GTWSL+GA  I+GAKISVICKNHNNQV FYKVYETNK GYFYAELVGYKM HP
Subjt:  MATKNLLCLS-LLLLLHIAAADPTRPAYNPVAVAVEGMVYCQNCQKIGTWSLTGANPIAGAKISVICKNHNNQVMFYKVYETNKYGYFYAELVGYKMAHP

Query:  VLDHPLQACKVKPVYSPRSECNLLTNLNYGLAGAPLRFEKKLVHGPKYRAAVYSAGPLAFHPDKCL
        VLDHPLQACKVKPVYSP S+CNLLTNLNYGL GAPLR+EKKLV GP YRAAVY+AGPLAFHP+KCL
Subjt:  VLDHPLQACKVKPVYSPRSECNLLTNLNYGLAGAPLRFEKKLVHGPKYRAAVYSAGPLAFHPDKCL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KP60 Uncharacterized protein

1.2e-70

79.52

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Query:  MATKNLLCLS-LLLLLHIAAADPTRPAYNPVAVAVEGMVYCQNCQKIGTWSLTGANPIAGAKISVICKNHNNQVMFYKVYETNKYGYFYAELVGYKMAHP
        M+TKNLL LS LLLLLHIA+ADP R  + P+++A+EG+VYCQNC+KIGTWSLT A PI+GAKISVICKNHN+QV FYKVY+TNK GYFYAELVGY+M HP
Subjt:  MATKNLLCLS-LLLLLHIAAADPTRPAYNPVAVAVEGMVYCQNCQKIGTWSLTGANPIAGAKISVICKNHNNQVMFYKVYETNKYGYFYAELVGYKMAHP

Query:  VLDHPLQACKVKPVYSPRSECNLLTNLNYGLAGAPLRFEKKLVHGPKYRAAVYSAGPLAFHPDKCL
        VLDHPLQACKVKPV SP S+CNLLTNLNYGL GAPLRFEKK V G  YRAAVY+AGPLAFHP KCL
Subjt:  VLDHPLQACKVKPVYSPRSECNLLTNLNYGLAGAPLRFEKKLVHGPKYRAAVYSAGPLAFHPDKCL

A0A1S3BZJ5 non-classical arabinogalactan protein 30

5.3e-71

79.04

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Query:  MATKNLLCLS--LLLLLHIAAADPTRPAYNPVAVAVEGMVYCQNCQKIGTWSLTGANPIAGAKISVICKNHNNQVMFYKVYETNKYGYFYAELVGYKMAH
        M+TKNLL LS  LLLLLHIA+A+P RP + P++VAVEG+VYCQNC+K+GTWSLT A PI+GAKISVICKNHN+QV FYKVY+TNK GYFYAELVGY+M H
Subjt:  MATKNLLCLS--LLLLLHIAAADPTRPAYNPVAVAVEGMVYCQNCQKIGTWSLTGANPIAGAKISVICKNHNNQVMFYKVYETNKYGYFYAELVGYKMAH

Query:  PVLDHPLQACKVKPVYSPRSECNLLTNLNYGLAGAPLRFEKKLVHGPKYRAAVYSAGPLAFHPDKCL
        PVLDHPLQACKVKPV SP S+CNLLTNLNYGL GAPLR+EKK V G  YRAAVY+AGPLAFHP KCL
Subjt:  PVLDHPLQACKVKPVYSPRSECNLLTNLNYGLAGAPLRFEKKLVHGPKYRAAVYSAGPLAFHPDKCL

A0A6J1CYI2 non-classical arabinogalactan protein 30

4.7e-59

68.67

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Query:  MATKNLLCLSLLLLLHI--AAADPTRPAYNPVAVAVEGMVYCQNCQKIGTWSLTGANPIAGAKISVICKNHNNQVMFYKVYETNKYGYFYAELVGYKMAH
        M  +NLL L +LLL     AAADPTR A+ PV + VEG+V+CQNC++IG+WSLT    IAGAK+SVICKN +NQV FYKVY+T+  GYFYAELVGYKM H
Subjt:  MATKNLLCLSLLLLLHI--AAADPTRPAYNPVAVAVEGMVYCQNCQKIGTWSLTGANPIAGAKISVICKNHNNQVMFYKVYETNKYGYFYAELVGYKMAH

Query:  PVLDHPLQACKVKPVYSPRSECNLLTNLNYGLAGAPLRFEKKLVHGPKYRAAVYSAGPLAFHPDKC
        PVLDHPLQ CKVK V SP  EC+ LTN+NYGLAGAPLR+E K+V G  YRA VY+AGPLAFHP+KC
Subjt:  PVLDHPLQACKVKPVYSPRSECNLLTNLNYGLAGAPLRFEKKLVHGPKYRAAVYSAGPLAFHPDKC

A0A6J1FS98 non-classical arabinogalactan protein 30

7.2e-76

84.34

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Query:  MATKNLLCLS-LLLLLHIAAADPTRPAYNPVAVAVEGMVYCQNCQKIGTWSLTGANPIAGAKISVICKNHNNQVMFYKVYETNKYGYFYAELVGYKMAHP
        M  K+LL LS LLLLLHIAAA+P RP   PVA+AVEGMVYCQNCQKIG+WSLTGA PIAGAKISVICKNHNNQV FYKVYETNKYGYFYAELVGYKM HP
Subjt:  MATKNLLCLS-LLLLLHIAAADPTRPAYNPVAVAVEGMVYCQNCQKIGTWSLTGANPIAGAKISVICKNHNNQVMFYKVYETNKYGYFYAELVGYKMAHP

Query:  VLDHPLQACKVKPVYSPRSECNLLTNLNYGLAGAPLRFEKKLVHGPKYRAAVYSAGPLAFHPDKCL
        VLDHPLQACKVKP+ SP S+C+LLTNLNYG+AGAPLR++KK V GPKYRAAVYSAGPLAFHP+KCL
Subjt:  VLDHPLQACKVKPVYSPRSECNLLTNLNYGLAGAPLRFEKKLVHGPKYRAAVYSAGPLAFHPDKCL

A0A6J1K278 non-classical arabinogalactan protein 30

6.1e-75

83.73

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Query:  MATKNLLCLS-LLLLLHIAAADPTRPAYNPVAVAVEGMVYCQNCQKIGTWSLTGANPIAGAKISVICKNHNNQVMFYKVYETNKYGYFYAELVGYKMAHP
        MA K+LL LS LLLLLHIAAA+P RP   PVA+AVEGMVYCQNCQKIG+WSLTGA  IAGAKISVICKNHNNQV FYKVYET+KYGYFYAELVGYKM HP
Subjt:  MATKNLLCLS-LLLLLHIAAADPTRPAYNPVAVAVEGMVYCQNCQKIGTWSLTGANPIAGAKISVICKNHNNQVMFYKVYETNKYGYFYAELVGYKMAHP

Query:  VLDHPLQACKVKPVYSPRSECNLLTNLNYGLAGAPLRFEKKLVHGPKYRAAVYSAGPLAFHPDKCL
        VLDHPLQACKVKP+ SP S+C+LLTNLNYG+AGAPLR++KK V GPKYRAAVYSAGPLAFHP+KCL
Subjt:  VLDHPLQACKVKPVYSPRSECNLLTNLNYGLAGAPLRFEKKLVHGPKYRAAVYSAGPLAFHPDKCL

SwissProt top hits

e value

%identity

Alignment

Q03211 Pistil-specific extensin-like protein

9.8e-06

31.07

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Query:  VEGMVYCQNCQKIGTWSLTGANPIAGAKISVICKNHNNQVMFYKVYETNKYGYFYAELVGYKMAHPVLDHPLQACKVKPVYSPRSECNLLTNLNYGLAGA
        V G+VYC++C   G  +L  A+ + GA + +IC      V +     T+  G F        M   +    +  CKV  V SP   CN+ TN N G +G 
Subjt:  VEGMVYCQNCQKIGTWSLTGANPIAGAKISVICKNHNNQVMFYKVYETNKYGYFYAELVGYKMAHPVLDHPLQACKVKPVYSPRSECNLLTNLNYGLAGA

Query:  PLR
         L+
Subjt:  PLR

Arabidopsis top hits

e value

%identity

Alignment

AT5G05500.1 Pollen Ole e 1 allergen and extensin family protein

3.7e-48

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Query:  PAYNPVAVAVEGMVYCQNCQKIGTWSLTGANPIAGAKISVICKNHNNQVMFYKVYETNKYGYFYAELVGYKMAHPVLDHPLQACKVKPVYSPRSECNLLT
        PA   V  AVEGMVYCQ+C K G+WSL GA  IAGAKIS+ICKNH  QV FYKV+ T+ YG+FY EL G+KM    LDHPL +C+ K V SPR +CNL +
Subjt:  PAYNPVAVAVEGMVYCQNCQKIGTWSLTGANPIAGAKISVICKNHNNQVMFYKVYETNKYGYFYAELVGYKMAHPVLDHPLQACKVKPVYSPRSECNLLT

Query:  NLNYGLAGAPLRFEKKLVHGPKYRAAVYSAGPLAFHPDKC
        N+N  L GAPLR+E+K +    Y A +Y+AGPLAF PD C
Subjt:  NLNYGLAGAPLRFEKKLVHGPKYRAAVYSAGPLAFHPDKC

Sequences

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CDS sequence

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ATGGCCACCAAAAACCTCCTCTGCCTCTCCCTCCTCCTCCTCCTCCACATCGCCGCCGCAGACCCGACCCGACCCGCCTACAACCCGGTGGCGGTGGCGGTGGAGGGCAT
GGTTTACTGCCAAAACTGCCAGAAAATCGGAACCTGGTCGCTGACCGGAGCAAACCCGATCGCCGGAGCAAAAATAAGCGTGATTTGCAAGAATCACAACAACCAAGTGA
TGTTCTACAAGGTGTACGAAACCAACAAATACGGGTATTTCTACGCGGAGCTGGTCGGGTACAAAATGGCCCACCCGGTTCTTGACCACCCGCTCCAGGCCTGCAAAGTC
AAACCGGTTTATTCCCCTCGGTCCGAATGCAACCTCTTGACCAATCTCAATTACGGCCTGGCCGGAGCCCCGCTCCGGTTCGAGAAGAAGCTCGTCCACGGTCCGAAGTA
TCGGGCCGCGGTTTACTCGGCCGGCCCGTTGGCTTTCCACCCGGACAAGTGTCTCTAG

mRNA sequence

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Protein sequence

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MATKNLLCLSLLLLLHIAAADPTRPAYNPVAVAVEGMVYCQNCQKIGTWSLTGANPIAGAKISVICKNHNNQVMFYKVYETNKYGYFYAELVGYKMAHPVLDHPLQACKV
KPVYSPRSECNLLTNLNYGLAGAPLRFEKKLVHGPKYRAAVYSAGPLAFHPDKCL

Sed0020461 (gene) of Chayote v1 genome