CuGenDBv2

Gene ID	Sed0020474
Organism	Sechium edule (Chayote v1)
Description	SOSS complex subunit B homolog
Genome location	LG04:47634948..47637893
RNA-Seq Expression	Sed0020474
Synteny	Sed0020474
Gene Ontology terms	GO:0000724 - double-strand break repair via homologous recombination (biological process) GO:0010212 - response to ionizing radiation (biological process) GO:0070876 - SOSS complex (cellular component) GO:0003677 - DNA binding (molecular function)
InterPro domains	IPR012340 - Nucleic acid-binding, OB-fold

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004135609.1 SOSS complex subunit B homolog [Cucumis sativus]

4.9e-51

91.74

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Query:  MEGEKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTNLKKYVKGSVLS
        MEG+ KVCQSLVAD TAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRN+NLVLRAGKRGKIEKVGEF MVFVETPNMSEIHWVPDT N  KYVK SVLS
Subjt:  MEGEKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTNLKKYVKGSVLS

Query:  PYSRIFPPI
        PYSRIFPPI
Subjt:  PYSRIFPPI

XP_008450623.1 PREDICTED: SOSS complex subunit B homolog [Cucumis melo]

4.9e-51

91.74

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Query:  MEGEKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTNLKKYVKGSVLS
        MEG+ KVCQSLVAD TAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRN+NLVLRAGKRGKIEKVGEF MVFVETPNMSEIHWVPDT N  KYVK SVLS
Subjt:  MEGEKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTNLKKYVKGSVLS

Query:  PYSRIFPPI
        PYSRIFPPI
Subjt:  PYSRIFPPI

XP_022961520.1 SOSS complex subunit B homolog [Cucurbita moschata]

3.4e-52

92.66

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Query:  MEGEKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTNLKKYVKGSVLS
        MEG+ K CQSLVAD TAAVHFQLWG+ECDVVEPSDI+RLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTN KKYVK SVLS
Subjt:  MEGEKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTNLKKYVKGSVLS

Query:  PYSRIFPPI
        PYSRIFPPI
Subjt:  PYSRIFPPI

XP_023515959.1 SOSS complex subunit B homolog [Cucurbita pepo subsp. pepo]

2.9e-51

89.91

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Query:  MEGEKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTNLKKYVKGSVLS
        +EG+ K CQSLVAD TAAVHFQLWG+ECDVVEPSDI+RLTNGIFSYSRN+NLVLRAGKRGK+EKVGEFNMVFVETPNMSEIHWVPDTTN KKYVK SVLS
Subjt:  MEGEKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTNLKKYVKGSVLS

Query:  PYSRIFPPI
        PYSRIFPPI
Subjt:  PYSRIFPPI

XP_038878334.1 SOSS complex subunit B homolog [Benincasa hispida]

2.9e-51

91.74

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Query:  MEGEKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTNLKKYVKGSVLS
        MEG+ K CQSLVAD TAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRN+NLVLRAGKRGKIEKVGEF MVFVETPNMSEIHWVPDTTN  KYVK SVLS
Subjt:  MEGEKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTNLKKYVKGSVLS

Query:  PYSRIFPPI
        PYSRIFPPI
Subjt:  PYSRIFPPI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LW03 Uncharacterized protein

2.4e-51

91.74

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Query:  MEGEKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTNLKKYVKGSVLS
        MEG+ KVCQSLVAD TAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRN+NLVLRAGKRGKIEKVGEF MVFVETPNMSEIHWVPDT N  KYVK SVLS
Subjt:  MEGEKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTNLKKYVKGSVLS

Query:  PYSRIFPPI
        PYSRIFPPI
Subjt:  PYSRIFPPI

A0A1S3BPN4 SOSS complex subunit B homolog

2.4e-51

91.74

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Query:  MEGEKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTNLKKYVKGSVLS
        MEG+ KVCQSLVAD TAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRN+NLVLRAGKRGKIEKVGEF MVFVETPNMSEIHWVPDT N  KYVK SVLS
Subjt:  MEGEKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTNLKKYVKGSVLS

Query:  PYSRIFPPI
        PYSRIFPPI
Subjt:  PYSRIFPPI

A0A5D3CIR3 SOSS complex subunit B-like protein

2.4e-51

91.74

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Query:  MEGEKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTNLKKYVKGSVLS
        MEG+ KVCQSLVAD TAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRN+NLVLRAGKRGKIEKVGEF MVFVETPNMSEIHWVPDT N  KYVK SVLS
Subjt:  MEGEKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTNLKKYVKGSVLS

Query:  PYSRIFPPI
        PYSRIFPPI
Subjt:  PYSRIFPPI

A0A6J1HAL0 SOSS complex subunit B homolog

1.7e-52

92.66

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Query:  MEGEKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTNLKKYVKGSVLS
        MEG+ K CQSLVAD TAAVHFQLWG+ECDVVEPSDI+RLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTN KKYVK SVLS
Subjt:  MEGEKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTNLKKYVKGSVLS

Query:  PYSRIFPPI
        PYSRIFPPI
Subjt:  PYSRIFPPI

A0A6J1HZ66 SOSS complex subunit B homolog

2.6e-50

88.07

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Query:  MEGEKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTNLKKYVKGSVLS
        M+G+ K CQSLVAD TAAVHFQLWG+ECDVVEPSDI+RL NGIFSYSRN+NLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDT+N KKYVK SV+S
Subjt:  MEGEKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTNLKKYVKGSVLS

Query:  PYSRIFPPI
        PYSRIFPPI
Subjt:  PYSRIFPPI

SwissProt top hits

e value

%identity

Alignment

A6QLK2 SOSS complex subunit B1

4.4e-10

41.56

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Query:  EKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSE
        E + C+  VAD T +++  +W D  ++++P DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E PN SE
Subjt:  EKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSE

Q3SWT1 SOSS complex subunit B1

4.4e-10

41.56

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Query:  EKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSE
        E + C+  VAD T +++  +W D  ++++P DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E PN SE
Subjt:  EKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSE

Q54X41 SOSS complex subunit B homolog

8.8e-11

38.68

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Query:  EKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHW--VPDTTNLKKYVKGSVLSP
        E  + Q LVAD TA+++  +W    + ++P DI+RL  G +S      L L  GK G IEK+GEF   FVE PN+S   W    D  N K  V     SP
Subjt:  EKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHW--VPDTTNLKKYVKGSVLSP

Query:  YSRIFP
        + +  P
Subjt:  YSRIFP

Q8R2Y9 SOSS complex subunit B1

4.4e-10

41.56

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Query:  EKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSE
        E + C+  VAD T +++  +W D  ++++P DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E PN SE
Subjt:  EKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSE

Q9BQ15 SOSS complex subunit B1

4.4e-10

41.56

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Query:  EKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSE
        E + C+  VAD T +++  +W D  ++++P DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E PN SE
Subjt:  EKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSE

Arabidopsis top hits

e value

%identity

Alignment

AT5G63690.1 Nucleic acid-binding, OB-fold-like protein

9.3e-40

66.67

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Query:  KKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTNLKKYVKGSVLSPYSR
        K  C +L AD TAAVH QLWGDECD  E  DI++LTNGIFSY RNS L+LRAGKRGK+EK+GEF + FVETPN+SEI W+PD  N K+Y++  V+S YSR
Subjt:  KKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTNLKKYVKGSVLSPYSR

Query:  IFPPI
        IFPP+
Subjt:  IFPPI

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGAAGGAGAAAAAAAAGTATGCCAATCACTGGTGGCCGACCCAACAGCTGCCGTTCACTTCCAACTATGGGGAGACGAGTGCGACGTCGTCGAGCCAAGCGACATTAT
ACGCTTGACCAACGGGATATTCTCTTACAGCCGAAACAGTAATCTGGTGCTGAGGGCAGGGAAGAGAGGGAAGATAGAGAAGGTGGGAGAGTTCAACATGGTGTTTGTAG
AGACACCGAATATGAGCGAGATCCATTGGGTTCCCGACACGACGAACTTGAAGAAGTATGTGAAGGGATCTGTTCTATCTCCCTATTCTCGCATTTTCCCGCCGATCCAT
TGA

mRNA sequence

Show/hide mRNA sequence

GAAATTTTAAAGGGAGAAAATTTGAACCCTAGGCCTGACTCTTCTTCTGTTTGATTTCTCTGCTGAAGCTTGACACCGCCATCGCCAACCCTCGTTTTTCTTGGAGGTAG
ATATCTCTCAAGGACTTAGTACCAGCAGCTCAGAATAATGTAAATGCAGAATTCATAGTTTTGGAGAAAGGCAATGCAACCATGGAAGGAGAAAAAAAAGTATGCCAATC
ACTGGTGGCCGACCCAACAGCTGCCGTTCACTTCCAACTATGGGGAGACGAGTGCGACGTCGTCGAGCCAAGCGACATTATACGCTTGACCAACGGGATATTCTCTTACA
GCCGAAACAGTAATCTGGTGCTGAGGGCAGGGAAGAGAGGGAAGATAGAGAAGGTGGGAGAGTTCAACATGGTGTTTGTAGAGACACCGAATATGAGCGAGATCCATTGG
GTTCCCGACACGACGAACTTGAAGAAGTATGTGAAGGGATCTGTTCTATCTCCCTATTCTCGCATTTTCCCGCCGATCCATTGATGTCATTGTGGTTGTAGACCAGGCCT
GAGTGAATGTGTTTTTTTTCAAATACAGCAAAGAGAGGTCAAGAAAAATGTAGGATTTTGGAGATGGAATTGAAATTATGATTTACCAATATTTTAAATGGAAATGGTGT
GTATTGCACAACTTTTTTTACAAATTAGGAAGCAAAACAAGAGGGATAAAACACAATCATTTGTGGTTCACAATAATCAAACATATTGCAAACTAAGGCAAAGAAACCAT
GATAGAAATAAGCGCTGAGCTTTTGGCTGGGATTTGAGCTTTACCTGCCATTTACAAGATGTGACTGCAACCAAAC

Protein sequence

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MEGEKKVCQSLVADPTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTNLKKYVKGSVLSPYSRIFPPIH

Sed0020474 (gene) of Chayote v1 genome