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Sed0020490 (gene) of Chayote v1 genome

Gene IDSed0020490
OrganismSechium edule (Chayote v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationLG14:19350819..19352256
RNA-Seq ExpressionSed0020490
SyntenySed0020490
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6594897.1 hypothetical protein SDJN03_11450, partial [Cucurbita argyrosperma subsp. sororia]2.0e-6074.19Show/hide
Query:  MDQNMNCFLPNILGIAEMSLL-PPSGSPRIGHAKVKKVEEKGLKNAISEEEMKIRREIETEIERHLEEEIKGGIYQQALRLRRLYVHREKAAADMAPPPE
        MDQ  NCF P+ILG+  +SLL PP+GSP   HAK+ KV EKGL +AISEEEMKIRREIE EIER LEEEIKGGIYQQALRLRRLY HR K+      PP 
Subjt:  MDQNMNCFLPNILGIAEMSLL-PPSGSPRIGHAKVKKVEEKGLKNAISEEEMKIRREIETEIERHLEEEIKGGIYQQALRLRRLYVHREKAAADMAPPPE

Query:  KNKKELLEVNISIKMEGATKMEIRETKKAVD-RPRTARSETAARTVPEVKRLDWVKSLRSSRAPPVFGKNVGFYRNKMPPRPVRYQ
        K KKELLEVNISIKMEG TKMEI++    V  R RTARS+TA+RTVPEVKRLDWVKSLRSS APPV GKNVGFYRNKMPP P  YQ
Subjt:  KNKKELLEVNISIKMEGATKMEIRETKKAVD-RPRTARSETAARTVPEVKRLDWVKSLRSSRAPPVFGKNVGFYRNKMPPRPVRYQ

XP_022962743.1 uncharacterized protein LOC111463142 isoform X1 [Cucurbita moschata]3.8e-5970.26Show/hide
Query:  MDQNMNCFLPNILGIAEMSLL----------PPSGSPRIGHAKVKKVEEKGLKNAISEEEMKIRREIETEIERHLEEEIKGGIYQQALRLRRLYVHREKA
        MDQ  NCF P+ILG   +S L          PP+GSP   HAK+ KV EKGL +AISEEEMKIRREIE EIER LEEEIKGGIYQQALRLRRLY HR K+
Subjt:  MDQNMNCFLPNILGIAEMSLL----------PPSGSPRIGHAKVKKVEEKGLKNAISEEEMKIRREIETEIERHLEEEIKGGIYQQALRLRRLYVHREKA

Query:  AADMAPPPEKNKKELLEVNISIKMEGATKMEIRETKKAVD-RPRTARSETAARTVPEVKRLDWVKSLRSSRAPPVFGKNVGFYRNKMPPRPVRYQ
              PP K KKELLEVNISIKMEG TKMEI++    V  R RTARS+TA+RTVPEVKRLDWVKSLRSS APPV GKNVGFYRNKMPP P  YQ
Subjt:  AADMAPPPEKNKKELLEVNISIKMEGATKMEIRETKKAVD-RPRTARSETAARTVPEVKRLDWVKSLRSSRAPPVFGKNVGFYRNKMPPRPVRYQ

XP_022962744.1 uncharacterized protein LOC111463142 isoform X2 [Cucurbita moschata]9.0e-6174.19Show/hide
Query:  MDQNMNCFLPNILGIAEMSLL-PPSGSPRIGHAKVKKVEEKGLKNAISEEEMKIRREIETEIERHLEEEIKGGIYQQALRLRRLYVHREKAAADMAPPPE
        MDQ  NCF P+ILG+  +SLL PP+GSP   HAK+ KV EKGL +AISEEEMKIRREIE EIER LEEEIKGGIYQQALRLRRLY HR K+      PP 
Subjt:  MDQNMNCFLPNILGIAEMSLL-PPSGSPRIGHAKVKKVEEKGLKNAISEEEMKIRREIETEIERHLEEEIKGGIYQQALRLRRLYVHREKAAADMAPPPE

Query:  KNKKELLEVNISIKMEGATKMEIRETKKAVD-RPRTARSETAARTVPEVKRLDWVKSLRSSRAPPVFGKNVGFYRNKMPPRPVRYQ
        K KKELLEVNISIKMEG TKMEI++    V  R RTARS+TA+RTVPEVKRLDWVKSLRSS APPV GKNVGFYRNKMPP P  YQ
Subjt:  KNKKELLEVNISIKMEGATKMEIRETKKAVD-RPRTARSETAARTVPEVKRLDWVKSLRSSRAPPVFGKNVGFYRNKMPPRPVRYQ

XP_023003824.1 uncharacterized protein LOC111497292 [Cucurbita maxima]9.6e-6375.68Show/hide
Query:  MDQNMNCFLPNILGIAEMSLLPPSGSPRIGHAKVKKVEEKGLKNAISEEEMKIRREIETEIERHLEEEIKGGIYQQALRLRRLYVHREKAAADMAPPPEK
        MDQ  NCF P+ILG+  +SLLPPSGSP  GHAK+ KV EKGL +AISEEEMKIRREIE EIER LEEEIKGGIYQQALRLRRLY HR K+      PP K
Subjt:  MDQNMNCFLPNILGIAEMSLLPPSGSPRIGHAKVKKVEEKGLKNAISEEEMKIRREIETEIERHLEEEIKGGIYQQALRLRRLYVHREKAAADMAPPPEK

Query:  NKKELLEVNISIKMEGATKMEIRETKKAVD-RPRTARSETAARTVPEVKRLDWVKSLRSSRAPPVFGKNVGFYRNKMPPRPVRYQ
         KKELLEVNISIKMEG TKMEI+E    V+   RTARS+TA+RTVPEVKRLDWVKSLRSS APPV GKNVGFYRNKMPP P  YQ
Subjt:  NKKELLEVNISIKMEGATKMEIRETKKAVD-RPRTARSETAARTVPEVKRLDWVKSLRSSRAPPVFGKNVGFYRNKMPPRPVRYQ

XP_023517469.1 uncharacterized protein LOC111781225 [Cucurbita pepo subsp. pepo]4.5e-6073.66Show/hide
Query:  MDQNMNCFLPNILGIAEMSLL-PPSGSPRIGHAKVKKVEEKGLKNAISEEEMKIRREIETEIERHLEEEIKGGIYQQALRLRRLYVHREKAAADMAPPPE
        MDQ  NCF P+ILG+  +SLL PP+GSP   HAK+ KV EK L +AISEEEMKIRREIE EIER LEEEIKGGIYQQALRLRRLY HR K+      PP 
Subjt:  MDQNMNCFLPNILGIAEMSLL-PPSGSPRIGHAKVKKVEEKGLKNAISEEEMKIRREIETEIERHLEEEIKGGIYQQALRLRRLYVHREKAAADMAPPPE

Query:  KNKKELLEVNISIKMEGATKMEIRETKKAVD-RPRTARSETAARTVPEVKRLDWVKSLRSSRAPPVFGKNVGFYRNKMPPRPVRYQ
        K KKELLEVNISIKMEG TKMEI++    V  R RTARS+TA+RTVPEVKRLDWVKSLRSS APPV GKNVGFYRNKMPP P  YQ
Subjt:  KNKKELLEVNISIKMEGATKMEIRETKKAVD-RPRTARSETAARTVPEVKRLDWVKSLRSSRAPPVFGKNVGFYRNKMPPRPVRYQ

TrEMBL top hitse value%identityAlignment
A0A0A0KJZ6 Uncharacterized protein4.0e-3867.09Show/hide
Query:  MSLLPPSGSP-RIGHAKVKKVEEKGLKN-AISEEEMKIRREIETEIERHLEEEIKGGIYQQALRLRRLYVHREKAAADMAPPPEKNKKELLEVNISIKME
        MSL PPS SP    HA + K+EEKGLK+  ISEEEMKIRREIE EIER LEEEIKGGIYQQALRL RLY  R+ ++     P  K KKELLEVNISIKM+
Subjt:  MSLLPPSGSP-RIGHAKVKKVEEKGLKN-AISEEEMKIRREIETEIERHLEEEIKGGIYQQALRLRRLYVHREKAAADMAPPPEKNKKELLEVNISIKME

Query:  GATKMEIRETKKAVD-----RPRTARSETAARTVPEVKRLDWVKSLRSSRAP-PVFGK
        G TKMEI+ETKK        RPRT+RS T +R+VPE+KRLDW KSLRSS AP P  GK
Subjt:  GATKMEIRETKKAVD-----RPRTARSETAARTVPEVKRLDWVKSLRSSRAP-PVFGK

A0A1S3B1F7 uncharacterized protein LOC1034849424.7e-3968.35Show/hide
Query:  MSLLPPSGSP-RIGHAKVKKVEEKGLKN-AISEEEMKIRREIETEIERHLEEEIKGGIYQQALRLRRLYVHREKAAADMAPPPEKNKKELLEVNISIKME
        MSLL PS SP    HA + K+EEKGLK+  ISEEEMKIRREIE EIER LEEEIKGGIYQQALRL RLY HR+ +A     P  K  KELLEVNISIKM+
Subjt:  MSLLPPSGSP-RIGHAKVKKVEEKGLKN-AISEEEMKIRREIETEIERHLEEEIKGGIYQQALRLRRLYVHREKAAADMAPPPEKNKKELLEVNISIKME

Query:  GATKMEIRETKKAVD-----RPRTARSETAARTVPEVKRLDWVKSLRSSRAP-PVFGK
        G TKMEIRETKK        RPRT+RS T +R+VPE+KRLDW KSLRSS AP P  GK
Subjt:  GATKMEIRETKKAVD-----RPRTARSETAARTVPEVKRLDWVKSLRSSRAP-PVFGK

A0A6J1HFP1 uncharacterized protein LOC111463142 isoform X11.8e-5970.26Show/hide
Query:  MDQNMNCFLPNILGIAEMSLL----------PPSGSPRIGHAKVKKVEEKGLKNAISEEEMKIRREIETEIERHLEEEIKGGIYQQALRLRRLYVHREKA
        MDQ  NCF P+ILG   +S L          PP+GSP   HAK+ KV EKGL +AISEEEMKIRREIE EIER LEEEIKGGIYQQALRLRRLY HR K+
Subjt:  MDQNMNCFLPNILGIAEMSLL----------PPSGSPRIGHAKVKKVEEKGLKNAISEEEMKIRREIETEIERHLEEEIKGGIYQQALRLRRLYVHREKA

Query:  AADMAPPPEKNKKELLEVNISIKMEGATKMEIRETKKAVD-RPRTARSETAARTVPEVKRLDWVKSLRSSRAPPVFGKNVGFYRNKMPPRPVRYQ
              PP K KKELLEVNISIKMEG TKMEI++    V  R RTARS+TA+RTVPEVKRLDWVKSLRSS APPV GKNVGFYRNKMPP P  YQ
Subjt:  AADMAPPPEKNKKELLEVNISIKMEGATKMEIRETKKAVD-RPRTARSETAARTVPEVKRLDWVKSLRSSRAPPVFGKNVGFYRNKMPPRPVRYQ

A0A6J1HHY9 uncharacterized protein LOC111463142 isoform X24.4e-6174.19Show/hide
Query:  MDQNMNCFLPNILGIAEMSLL-PPSGSPRIGHAKVKKVEEKGLKNAISEEEMKIRREIETEIERHLEEEIKGGIYQQALRLRRLYVHREKAAADMAPPPE
        MDQ  NCF P+ILG+  +SLL PP+GSP   HAK+ KV EKGL +AISEEEMKIRREIE EIER LEEEIKGGIYQQALRLRRLY HR K+      PP 
Subjt:  MDQNMNCFLPNILGIAEMSLL-PPSGSPRIGHAKVKKVEEKGLKNAISEEEMKIRREIETEIERHLEEEIKGGIYQQALRLRRLYVHREKAAADMAPPPE

Query:  KNKKELLEVNISIKMEGATKMEIRETKKAVD-RPRTARSETAARTVPEVKRLDWVKSLRSSRAPPVFGKNVGFYRNKMPPRPVRYQ
        K KKELLEVNISIKMEG TKMEI++    V  R RTARS+TA+RTVPEVKRLDWVKSLRSS APPV GKNVGFYRNKMPP P  YQ
Subjt:  KNKKELLEVNISIKMEGATKMEIRETKKAVD-RPRTARSETAARTVPEVKRLDWVKSLRSSRAPPVFGKNVGFYRNKMPPRPVRYQ

A0A6J1KUF8 uncharacterized protein LOC1114972924.6e-6375.68Show/hide
Query:  MDQNMNCFLPNILGIAEMSLLPPSGSPRIGHAKVKKVEEKGLKNAISEEEMKIRREIETEIERHLEEEIKGGIYQQALRLRRLYVHREKAAADMAPPPEK
        MDQ  NCF P+ILG+  +SLLPPSGSP  GHAK+ KV EKGL +AISEEEMKIRREIE EIER LEEEIKGGIYQQALRLRRLY HR K+      PP K
Subjt:  MDQNMNCFLPNILGIAEMSLLPPSGSPRIGHAKVKKVEEKGLKNAISEEEMKIRREIETEIERHLEEEIKGGIYQQALRLRRLYVHREKAAADMAPPPEK

Query:  NKKELLEVNISIKMEGATKMEIRETKKAVD-RPRTARSETAARTVPEVKRLDWVKSLRSSRAPPVFGKNVGFYRNKMPPRPVRYQ
         KKELLEVNISIKMEG TKMEI+E    V+   RTARS+TA+RTVPEVKRLDWVKSLRSS APPV GKNVGFYRNKMPP P  YQ
Subjt:  NKKELLEVNISIKMEGATKMEIRETKKAVD-RPRTARSETAARTVPEVKRLDWVKSLRSSRAPPVFGKNVGFYRNKMPPRPVRYQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G26290.1 unknown protein7.9e-1549.47Show/hide
Query:  ISEEEMKIRREIETEIERHLEEEIKGGIYQQALRLRRLYVHREKAAADMAPPPEKNKKELLEVNISIKMEGATKMEIRETKKAVDRPRTARSETA
        +S++E +IR E+E EIER+LE E K GIY  AL+LRRLY  R +   ++     +  K +LEVNI+IKMEG TK+EI E KK VD  +T ++E +
Subjt:  ISEEEMKIRREIETEIERHLEEEIKGGIYQQALRLRRLYVHREKAAADMAPPPEKNKKELLEVNISIKMEGATKMEIRETKKAVDRPRTARSETA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACCAGAACATGAATTGCTTCCTCCCCAACATCCTAGGGATAGCTGAAATGTCGCTTTTGCCACCGAGTGGCTCTCCTCGTATTGGTCATGCAAAAGTGAAAAAAGT
GGAGGAAAAGGGTTTAAAGAATGCAATTTCAGAAGAAGAGATGAAGATCCGACGAGAAATTGAAACAGAAATAGAGAGACATTTGGAAGAAGAAATTAAGGGAGGAATTT
ACCAACAAGCCCTCCGCCTGCGCCGCCTTTATGTACACCGCGAAAAAGCTGCCGCCGACATGGCGCCGCCACCGGAGAAAAACAAGAAGGAGCTTTTAGAAGTAAATATC
AGCATTAAAATGGAAGGAGCAACCAAGATGGAAATAAGAGAGACCAAAAAGGCGGTGGACCGGCCGAGGACTGCTCGGTCCGAGACCGCTGCTCGAACGGTTCCGGAGGT
GAAAAGGTTGGACTGGGTGAAGTCTCTCCGGTCCAGTAGGGCTCCGCCGGTTTTCGGAAAAAACGTCGGCTTTTATCGGAATAAAATGCCGCCGAGGCCGGTTCGTTATC
AATGTGGCTGTCCATAG
mRNA sequenceShow/hide mRNA sequence
GATGGACCAGAACATGAATTGCTTCCTCCCCAACATCCTAGGGATAGCTGAAATGTCGCTTTTGCCACCGAGTGGCTCTCCTCGTATTGGTCATGCAAAAGTGAAAAAAG
TGGAGGAAAAGGGTTTAAAGAATGCAATTTCAGAAGAAGAGATGAAGATCCGACGAGAAATTGAAACAGAAATAGAGAGACATTTGGAAGAAGAAATTAAGGGAGGAATT
TACCAACAAGCCCTCCGCCTGCGCCGCCTTTATGTACACCGCGAAAAAGCTGCCGCCGACATGGCGCCGCCACCGGAGAAAAACAAGAAGGAGCTTTTAGAAGTAAATAT
CAGCATTAAAATGGAAGGAGCAACCAAGATGGAAATAAGAGAGACCAAAAAGGCGGTGGACCGGCCGAGGACTGCTCGGTCCGAGACCGCTGCTCGAACGGTTCCGGAGG
TGAAAAGGTTGGACTGGGTGAAGTCTCTCCGGTCCAGTAGGGCTCCGCCGGTTTTCGGAAAAAACGTCGGCTTTTATCGGAATAAAATGCCGCCGAGGCCGGTTCGTTAT
CAATGTGGCTGTCCATAGACCTAATTTTCAGTTTAAATGACCATGAAATTATTATTTATTCGAATGTTGCCATGCGGGGTTTATTTATTTATTTTTGTTTTGTAACTATA
ACTTCTTAATTTCATTTGTTGGTGGATGTGTGTTAATAAGTTGAATTTTCGATAGAAATGTAACGTGAGAAGGTGG
Protein sequenceShow/hide protein sequence
MDQNMNCFLPNILGIAEMSLLPPSGSPRIGHAKVKKVEEKGLKNAISEEEMKIRREIETEIERHLEEEIKGGIYQQALRLRRLYVHREKAAADMAPPPEKNKKELLEVNI
SIKMEGATKMEIRETKKAVDRPRTARSETAARTVPEVKRLDWVKSLRSSRAPPVFGKNVGFYRNKMPPRPVRYQCGCP