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Sed0020494 (gene) of Chayote v1 genome

Gene IDSed0020494
OrganismSechium edule (Chayote v1)
DescriptionRING-type domain-containing protein
Genome locationLG01:13400733..13401389
RNA-Seq ExpressionSed0020494
SyntenySed0020494
Gene Ontology termsGO:0016740 - transferase activity (molecular function)
GO:0140096 - catalytic activity, acting on a protein (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6584266.1 E3 ubiquitin-protein ligase MPSR1, partial [Cucurbita argyrosperma subsp. sororia]4.4e-5160.37Show/hide
Query:  AGAAVSGLQCEVWQPQGLYET--PYPSSSSVKPAELFIDFYV--FLNEGDEQMTRSLGYKNFRQRC---TRDSFSWSTISSMLSQTNVPYHLQPFFIQHI
        A AAVSGL CEVWQPQ   ET   + SSSS  P E FIDFYV  +  +GD Q+  +L YKNFRQRC   T+DSFSWS IS+MLS+TNVPYHLQPFFIQ I
Subjt:  AGAAVSGLQCEVWQPQGLYET--PYPSSSSVKPAELFIDFYV--FLNEGDEQMTRSLGYKNFRQRC---TRDSFSWSTISSMLSQTNVPYHLQPFFIQHI

Query:  SITARRIATQPNNALSPTIPIVVDLLLPVE--EDA--TSSSRFRDRSDRSSVASIEDVVLERVD-DGSDSICVICL-DVISISN--GAVRMACCFHVYHR
        SI+AR IAT+P NALS TIP+VV+L+LP E  ED+   S +     S R+S ASI++  +ERV+ +G  S CVICL D++S+ +   A+RM  C H+YHR
Subjt:  SITARRIATQPNNALSPTIPIVVDLLLPVE--EDA--TSSSRFRDRSDRSSVASIEDVVLERVD-DGSDSICVICL-DVISISN--GAVRMACCFHVYHR

Query:  CCIHKWLQLTNRCPLCR
         CIHKWLQL+NRCPLCR
Subjt:  CCIHKWLQLTNRCPLCR

KAG7019862.1 E3 ubiquitin-protein ligase SIRP1, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-5059.91Show/hide
Query:  AGAAVSGLQCEVWQPQGLYET--PYPSSSSVKPAELFIDFYV--FLNEGDEQMTRSLGYKNFRQRC---TRDSFSWSTISSMLSQTNVPYHLQPFFIQHI
        A AAVSGL CEVWQPQ   ET   + SSSS  P E FIDFYV  +  +GD Q+  +L YKNFRQRC   T+DSFSWS IS+MLS+TNVPYHLQPFFIQ I
Subjt:  AGAAVSGLQCEVWQPQGLYET--PYPSSSSVKPAELFIDFYV--FLNEGDEQMTRSLGYKNFRQRC---TRDSFSWSTISSMLSQTNVPYHLQPFFIQHI

Query:  SITARRIATQPNNALSPTIPIVVDLLLPVE--EDA--TSSSRFRDRSDRSSVASIEDVVLERVD-DGSDSICVICL-DVISISN--GAVRMACCFHVYHR
        SI+AR IAT+P NALS TIP+VV+L+LP E  ED+   S +     S R+S  SI++  +ERV+ +G  S CVICL D++S+ +   A+RM  C H+YHR
Subjt:  SITARRIATQPNNALSPTIPIVVDLLLPVE--EDA--TSSSRFRDRSDRSSVASIEDVVLERVD-DGSDSICVICL-DVISISN--GAVRMACCFHVYHR

Query:  CCIHKWLQLTNRCPLCR
         CIHKWLQL+NRCPLCR
Subjt:  CCIHKWLQLTNRCPLCR

XP_023001523.1 uncharacterized protein LOC111495638 [Cucurbita maxima]8.8e-5260.37Show/hide
Query:  AGAAVSGLQCEVWQPQGLYET--PYPSSSSVKPAELFIDFYV--FLNEGDEQMTRSLGYKNFRQRC---TRDSFSWSTISSMLSQTNVPYHLQPFFIQHI
        A AAVSGL CEVWQPQ   ET   + SSSS  P E FIDFYV  +  +GD Q+  +L YKNFRQRC   T+DSFSWS IS+MLS+TNVPYHLQPFFIQ I
Subjt:  AGAAVSGLQCEVWQPQGLYET--PYPSSSSVKPAELFIDFYV--FLNEGDEQMTRSLGYKNFRQRC---TRDSFSWSTISSMLSQTNVPYHLQPFFIQHI

Query:  SITARRIATQPNNALSPTIPIVVDLLLPVE--EDAT--SSSRFRDRSDRSSVASIEDVVLERVD-DGSDSICVICL-DVISISN--GAVRMACCFHVYHR
        SI+AR IAT+P NALS TIP+VV+L+LP E  ED++  S +     S R+S ASI++  +ERV+ +G+ S CVICL D++S+ +   A+RM  C H+YHR
Subjt:  SITARRIATQPNNALSPTIPIVVDLLLPVE--EDAT--SSSRFRDRSDRSSVASIEDVVLERVD-DGSDSICVICL-DVISISN--GAVRMACCFHVYHR

Query:  CCIHKWLQLTNRCPLCR
         CIHKWLQL+NRCPLCR
Subjt:  CCIHKWLQLTNRCPLCR

XP_023519803.1 RING-H2 finger protein ATL77-like [Cucurbita pepo subsp. pepo]3.4e-5160.83Show/hide
Query:  AGAAVSGLQCEVWQPQGLYET--PYPSSSSVKPAELFIDFYV--FLNEGDEQMTRSLGYKNFRQRC---TRDSFSWSTISSMLSQTNVPYHLQPFFIQHI
        A AAVSGL CEVWQPQ L ET   + SSSS  P E FIDFYV  +  +GD Q+  +L YKNFRQRC   T+DSFSWS IS+MLS+TNVPYHLQPFFIQ I
Subjt:  AGAAVSGLQCEVWQPQGLYET--PYPSSSSVKPAELFIDFYV--FLNEGDEQMTRSLGYKNFRQRC---TRDSFSWSTISSMLSQTNVPYHLQPFFIQHI

Query:  SITARRIATQPNNALSPTIPIVVDLLLPVE--EDA--TSSSRFRDRSDRSSVASIEDVVLERVD-DGSDSICVICL-DVISISN--GAVRMACCFHVYHR
        SI+AR IAT+P NALS TIP+VV+L+LP E  ED+   S +     S R+S ASI++  +ERV+ +G  S CVICL D++S+ +   A+RM  C H+YHR
Subjt:  SITARRIATQPNNALSPTIPIVVDLLLPVE--EDA--TSSSRFRDRSDRSSVASIEDVVLERVD-DGSDSICVICL-DVISISN--GAVRMACCFHVYHR

Query:  CCIHKWLQLTNRCPLCR
         CIHKWLQL+NRCPLCR
Subjt:  CCIHKWLQLTNRCPLCR

XP_038895883.1 E3 ubiquitin-protein ligase synoviolin A-like [Benincasa hispida]2.6e-5161.79Show/hide
Query:  SGLQCEVWQPQGLYETPYPSSSS--VKPAELFIDFYV--FLNEGDEQMTRSLGYKNFRQRC---TRDSFSWSTISSMLSQTNVPYHLQPFFIQHISITAR
        SGL CEVWQPQ   ETP  SSSS   +P E FIDFYV  +  +GDE +  +L YKNFRQRC   T+DSFSWS ISSMLS+TNVPYHLQPFFI  ISI AR
Subjt:  SGLQCEVWQPQGLYETPYPSSSS--VKPAELFIDFYV--FLNEGDEQMTRSLGYKNFRQRC---TRDSFSWSTISSMLSQTNVPYHLQPFFIQHISITAR

Query:  RIATQPNNALSPTIPIVVDLLLPVE--EDAT--SSSRFRDRSDRSSVASIEDVVLERVD-DGSDSICVICLD-VISISN--GAVRMACCFHVYHRCCIHK
         IAT+P NALS TIP+VV+L+LP E  ED++  S +     S R+S ASI+D  +ERV+ DG  S CVICLD ++SI     AVRM  C HVYHR CIHK
Subjt:  RIATQPNNALSPTIPIVVDLLLPVE--EDAT--SSSRFRDRSDRSSVASIEDVVLERVD-DGSDSICVICLD-VISISN--GAVRMACCFHVYHRCCIHK

Query:  WLQLTNRCPLCR
        WL+ +NRCPLCR
Subjt:  WLQLTNRCPLCR

TrEMBL top hitse value%identityAlignment
A0A0A0LR28 RING-type domain-containing protein8.4e-4857.6Show/hide
Query:  AVSGLQCEVWQPQGLYETPYPSSSS---VKPAELFIDFYV--FLNEGDEQMTRSLGYKNFRQRC---TRDSFSWSTISSMLSQTNVPYHLQPFFIQHISI
        A+SGL CEVWQPQ   E    SSSS    +P E FIDFYV  +   GDE ++ +L YKNFRQRC   T+DSFSWS ISSMLS+TNVPYHLQPFFI  IS 
Subjt:  AVSGLQCEVWQPQGLYETPYPSSSS---VKPAELFIDFYV--FLNEGDEQMTRSLGYKNFRQRC---TRDSFSWSTISSMLSQTNVPYHLQPFFIQHISI

Query:  TARRIATQPNNALSPTIPIVVDLLLPVEEDATSSSRFRDR------SDRSSVASIEDVVLERVD-DGSDSICVICLDVISISNGA---VRMACCFHVYHR
         AR IAT+P NALS TIP+VV+L+LP  EDA   S +         S R+S ASI++  +ER++ DG  S CVICLD I  S G    V    C HVYH 
Subjt:  TARRIATQPNNALSPTIPIVVDLLLPVEEDATSSSRFRDR------SDRSSVASIEDVVLERVD-DGSDSICVICLDVISISNGA---VRMACCFHVYHR

Query:  CCIHKWLQLTNRCPLCR
         CIHKWL+L+NRCPLCR
Subjt:  CCIHKWLQLTNRCPLCR

A0A1S3AU71 uncharacterized protein LOC1034828722.3e-5058.9Show/hide
Query:  AGAAVSGLQCEVWQPQGLYETPYPSSSS--VKPAELFIDFYV--FLNEGDEQMTRSLGYKNFRQRC---TRDSFSWSTISSMLSQTNVPYHLQPFFIQHI
        A AA+SGL CEVWQPQ   E    SSSS   +P E FIDFYV  +   GDE ++ +L YKNFRQRC   T+DSFSWS ISSMLS+TNVPYHLQPFFI  I
Subjt:  AGAAVSGLQCEVWQPQGLYETPYPSSSS--VKPAELFIDFYV--FLNEGDEQMTRSLGYKNFRQRC---TRDSFSWSTISSMLSQTNVPYHLQPFFIQHI

Query:  SITARRIATQPNNALSPTIPIVVDLLLPVEEDATSSSRFRDR------SDRSSVASIEDVVLERVD-DGSDSICVICLD---VISISNGAVRMACCFHVY
        SI AR IAT+P NALS TIP+VV+L+LP  EDA   S +         S R+S ASI++  +ER++ DG  S CVICLD    I     AVRM  C HVY
Subjt:  SITARRIATQPNNALSPTIPIVVDLLLPVEEDATSSSRFRDR------SDRSSVASIEDVVLERVD-DGSDSICVICLD---VISISNGAVRMACCFHVY

Query:  HRCCIHKWLQLTNRCPLCR
        H  CIHKWL+L+NRCPLCR
Subjt:  HRCCIHKWLQLTNRCPLCR

A0A5D3BJ05 E3 ubiquitin-protein ligase2.3e-5058.9Show/hide
Query:  AGAAVSGLQCEVWQPQGLYETPYPSSSS--VKPAELFIDFYV--FLNEGDEQMTRSLGYKNFRQRC---TRDSFSWSTISSMLSQTNVPYHLQPFFIQHI
        A AA+SGL CEVWQPQ   E    SSSS   +P E FIDFYV  +   GDE ++ +L YKNFRQRC   T+DSFSWS ISSMLS+TNVPYHLQPFFI  I
Subjt:  AGAAVSGLQCEVWQPQGLYETPYPSSSS--VKPAELFIDFYV--FLNEGDEQMTRSLGYKNFRQRC---TRDSFSWSTISSMLSQTNVPYHLQPFFIQHI

Query:  SITARRIATQPNNALSPTIPIVVDLLLPVEEDATSSSRFRDR------SDRSSVASIEDVVLERVD-DGSDSICVICLD---VISISNGAVRMACCFHVY
        SI AR IAT+P NALS TIP+VV+L+LP  EDA   S +         S R+S ASI++  +ER++ DG  S CVICLD    I     AVRM  C HVY
Subjt:  SITARRIATQPNNALSPTIPIVVDLLLPVEEDATSSSRFRDR------SDRSSVASIEDVVLERVD-DGSDSICVICLD---VISISNGAVRMACCFHVY

Query:  HRCCIHKWLQLTNRCPLCR
        H  CIHKWL+L+NRCPLCR
Subjt:  HRCCIHKWLQLTNRCPLCR

A0A6J1CAF5 E3 ubiquitin-protein ligase CIP8-like3.9e-4555.5Show/hide
Query:  AVSGLQCEVWQPQGLYETPYPSSSSVKPAELFIDFYV--FLNEGDEQMTRSLGYKNFRQR---CTRDSFSWSTISSMLSQTNVPYHLQPFFIQHISITAR
        + +GL CEVWQPQ   E+   SSSS +P E FID YV  + N+G E ++ SL YKNFR+R    T+DS SWS IS+MLS+T+VPYHLQPFFIQHIS+ AR
Subjt:  AVSGLQCEVWQPQGLYETPYPSSSSVKPAELFIDFYV--FLNEGDEQMTRSLGYKNFRQR---CTRDSFSWSTISSMLSQTNVPYHLQPFFIQHISITAR

Query:  RIATQPNNALSPTIPIVVDLLLPVEEDATSSS----RFRDRSDRSSVASIEDVVLERVDDG-SDSICVICLDVISISNGAVRMACCFHVYHRCCIHKWLQ
        RIA QP NALS TIPIVV+L+LP+ E+  S S    R  +   R+S ASIE++    ++ G     C ICLD   I  GAV M C  H+YHR CI KWLQ
Subjt:  RIATQPNNALSPTIPIVVDLLLPVEEDATSSS----RFRDRSDRSSVASIEDVVLERVDDG-SDSICVICLDVISISNGAVRMACCFHVYHRCCIHKWLQ

Query:  LTNRCPLCR
          N CPLCR
Subjt:  LTNRCPLCR

A0A6J1KQS3 uncharacterized protein LOC1114956384.3e-5260.37Show/hide
Query:  AGAAVSGLQCEVWQPQGLYET--PYPSSSSVKPAELFIDFYV--FLNEGDEQMTRSLGYKNFRQRC---TRDSFSWSTISSMLSQTNVPYHLQPFFIQHI
        A AAVSGL CEVWQPQ   ET   + SSSS  P E FIDFYV  +  +GD Q+  +L YKNFRQRC   T+DSFSWS IS+MLS+TNVPYHLQPFFIQ I
Subjt:  AGAAVSGLQCEVWQPQGLYET--PYPSSSSVKPAELFIDFYV--FLNEGDEQMTRSLGYKNFRQRC---TRDSFSWSTISSMLSQTNVPYHLQPFFIQHI

Query:  SITARRIATQPNNALSPTIPIVVDLLLPVE--EDAT--SSSRFRDRSDRSSVASIEDVVLERVD-DGSDSICVICL-DVISISN--GAVRMACCFHVYHR
        SI+AR IAT+P NALS TIP+VV+L+LP E  ED++  S +     S R+S ASI++  +ERV+ +G+ S CVICL D++S+ +   A+RM  C H+YHR
Subjt:  SITARRIATQPNNALSPTIPIVVDLLLPVE--EDAT--SSSRFRDRSDRSSVASIEDVVLERVD-DGSDSICVICL-DVISISN--GAVRMACCFHVYHR

Query:  CCIHKWLQLTNRCPLCR
         CIHKWLQL+NRCPLCR
Subjt:  CCIHKWLQLTNRCPLCR

SwissProt top hitse value%identityAlignment
O82353 RING-H2 finger protein ATL676.5e-0539.66Show/hide
Query:  GSDSICVICLDVISISNGAVRMACCFHVYHRCCIHKWLQLTNRCPLCRRSHIICPTPT
        G D+ C ICL     +     M  C H +H CC+  WL+L   CP+CR S +  PT T
Subjt:  GSDSICVICLDVISISNGAVRMACCFHVYHRCCIHKWLQLTNRCPLCRRSHIICPTPT

Arabidopsis top hitse value%identityAlignment
AT1G60360.1 RING/U-box superfamily protein1.3e-0541.3Show/hide
Query:  SICVICLDVISISNGAVRMACCFHVYHRCCIHKWLQLTNRCPLCRR
        S C +C++   +   A  +  C H+YH+ CI  WL+L N CP+CRR
Subjt:  SICVICLDVISISNGAVRMACCFHVYHRCCIHKWLQLTNRCPLCRR

AT2G46160.1 RING/U-box superfamily protein4.6e-0639.66Show/hide
Query:  GSDSICVICLDVISISNGAVRMACCFHVYHRCCIHKWLQLTNRCPLCRRSHIICPTPT
        G D+ C ICL     +     M  C H +H CC+  WL+L   CP+CR S +  PT T
Subjt:  GSDSICVICLDVISISNGAVRMACCFHVYHRCCIHKWLQLTNRCPLCRRSHIICPTPT

AT5G37230.1 RING/U-box superfamily protein1.7e-0532.29Show/hide
Query:  PIVVDLLLPVEEDATSSS---RFRDRSDRSSVASIEDVVLERVDDGSDSICVICLDVISIS--NGAVRMACCFHVYHRCCIHKWLQLTNRCPLCRR
        P  V   + V  D    S   R RD   R  +   + + L  + D  ++ C IC++  S S  +  + +  CFH++H+ CI KWL+    CPLCRR
Subjt:  PIVVDLLLPVEEDATSSS---RFRDRSDRSSVASIEDVVLERVDDGSDSICVICLDVISIS--NGAVRMACCFHVYHRCCIHKWLQLTNRCPLCRR

AT5G41430.1 RING/U-box superfamily protein1.0e-0539.68Show/hide
Query:  ASIEDVVLERVD-DGSDSI-CVICLDVISISNGAVRMACCFHVYHRCCIHKWLQLTNRCPLCR
        ASIE++  + ++ +G D I C ICL+ +   +  +R+  C HV+HR CI  WL+    CP CR
Subjt:  ASIEDVVLERVD-DGSDSI-CVICLDVISISNGAVRMACCFHVYHRCCIHKWLQLTNRCPLCR

AT5G41440.1 RING/U-box superfamily protein6.0e-0633.33Show/hide
Query:  SIEDVV-LERVDDGSDSICVICLDVISISNGAVRMACCFHVYHRCCIHKWLQLTNRCPLCRRS
        ++E ++ +E V++G +  C ICL+   I +  + +  C HV+HR C+  W+     CP+CR S
Subjt:  SIEDVV-LERVDDGSDSICVICLDVISISNGAVRMACCFHVYHRCCIHKWLQLTNRCPLCRRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCATCGCCGGCGCCGCCGTCTCTGGCCTCCAGTGCGAGGTGTGGCAGCCCCAAGGCTTGTATGAAACTCCATATCCTTCATCTTCTTCGGTTAAGCCCGCTGAGTT
GTTCATCGACTTCTACGTGTTTTTAAACGAAGGCGATGAGCAGATGACTCGATCTCTTGGTTATAAGAATTTCAGGCAAAGATGCACCCGAGATTCCTTCTCATGGTCGA
CTATTTCCTCGATGCTCTCCCAAACAAACGTGCCGTATCATCTTCAACCCTTCTTCATTCAACACATTTCCATTACGGCTCGCCGAATCGCCACACAGCCCAACAACGCT
CTCTCTCCAACCATTCCTATTGTCGTCGACCTCCTCCTCCCCGTGGAGGAGGATGCTACGTCAAGCTCTCGTTTTAGAGACAGGTCGGATCGATCGAGTGTGGCTTCGAT
CGAGGACGTAGTATTGGAAAGGGTGGATGATGGGAGTGATAGTATTTGCGTGATTTGTTTGGATGTGATTTCGATTTCAAATGGCGCAGTTCGTATGGCTTGTTGTTTCC
ATGTTTATCATCGCTGTTGTATTCACAAATGGCTCCAACTCACTAACCGTTGCCCATTGTGTCGCCGCTCTCACATAATATGCCCAACACCAACAGTGAATTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCCATCGCCGGCGCCGCCGTCTCTGGCCTCCAGTGCGAGGTGTGGCAGCCCCAAGGCTTGTATGAAACTCCATATCCTTCATCTTCTTCGGTTAAGCCCGCTGAGTT
GTTCATCGACTTCTACGTGTTTTTAAACGAAGGCGATGAGCAGATGACTCGATCTCTTGGTTATAAGAATTTCAGGCAAAGATGCACCCGAGATTCCTTCTCATGGTCGA
CTATTTCCTCGATGCTCTCCCAAACAAACGTGCCGTATCATCTTCAACCCTTCTTCATTCAACACATTTCCATTACGGCTCGCCGAATCGCCACACAGCCCAACAACGCT
CTCTCTCCAACCATTCCTATTGTCGTCGACCTCCTCCTCCCCGTGGAGGAGGATGCTACGTCAAGCTCTCGTTTTAGAGACAGGTCGGATCGATCGAGTGTGGCTTCGAT
CGAGGACGTAGTATTGGAAAGGGTGGATGATGGGAGTGATAGTATTTGCGTGATTTGTTTGGATGTGATTTCGATTTCAAATGGCGCAGTTCGTATGGCTTGTTGTTTCC
ATGTTTATCATCGCTGTTGTATTCACAAATGGCTCCAACTCACTAACCGTTGCCCATTGTGTCGCCGCTCTCACATAATATGCCCAACACCAACAGTGAATTCATGA
Protein sequenceShow/hide protein sequence
MSIAGAAVSGLQCEVWQPQGLYETPYPSSSSVKPAELFIDFYVFLNEGDEQMTRSLGYKNFRQRCTRDSFSWSTISSMLSQTNVPYHLQPFFIQHISITARRIATQPNNA
LSPTIPIVVDLLLPVEEDATSSSRFRDRSDRSSVASIEDVVLERVDDGSDSICVICLDVISISNGAVRMACCFHVYHRCCIHKWLQLTNRCPLCRRSHIICPTPTVNS