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Sed0020495 (gene) of Chayote v1 genome

Gene IDSed0020495
OrganismSechium edule (Chayote v1)
DescriptionThreonine dehydratase
Genome locationLG10:10975004..10976681
RNA-Seq ExpressionSed0020495
SyntenySed0020495
Gene Ontology termsGO:0006567 - threonine catabolic process (biological process)
GO:0009097 - isoleucine biosynthetic process (biological process)
GO:0004794 - L-threonine ammonia-lyase activity (molecular function)
InterPro domainsIPR001926 - Pyridoxal-phosphate dependent enzyme
IPR036052 - Tryptophan synthase beta subunit-like PLP-dependent enzyme


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6604380.1 Threonine dehydratase, partial [Cucurbita argyrosperma subsp. sororia]1.4e-3360.63Show/hide
Query:  MEIARKIRDKVHAIFVPVGSGS--------------QVLIFGVQLDEENSMAQALHFGEIVRVKDIDHFADGIAVKQVGDEAFRICWELVDDIILVNKHL
        MEI R+IR K+HAIFVP+G G                V +FGV+ +++NSMAQAL+ GEIV V DI HFADG+AV+QVG+E FRIC+EL+DD+ILV K  
Subjt:  MEIARKIRDKVHAIFVPVGSGS--------------QVLIFGVQLDEENSMAQALHFGEIVRVKDIDHFADGIAVKQVGDEAFRICWELVDDIILVNKHL

Query:  VAVAMKDMFNDERSILEPSGALSIAAA
        ++ A+KDMFND R+ILEPSGALSIAAA
Subjt:  VAVAMKDMFNDERSILEPSGALSIAAA

KAG7034531.1 Threonine dehydratase biosynthetic, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]1.4e-3360.63Show/hide
Query:  MEIARKIRDKVHAIFVPVGSGS--------------QVLIFGVQLDEENSMAQALHFGEIVRVKDIDHFADGIAVKQVGDEAFRICWELVDDIILVNKHL
        MEI R+IR K+HAIFVP+G G                V +FGV+ +++NSMAQAL+ GEIV V DI HFADG+AV+QVG+E FRIC+EL+DD+ILV K  
Subjt:  MEIARKIRDKVHAIFVPVGSGS--------------QVLIFGVQLDEENSMAQALHFGEIVRVKDIDHFADGIAVKQVGDEAFRICWELVDDIILVNKHL

Query:  VAVAMKDMFNDERSILEPSGALSIAAA
        ++ A+KDMFND R+ILEPSGALSIAAA
Subjt:  VAVAMKDMFNDERSILEPSGALSIAAA

XP_022977240.1 threonine dehydratase biosynthetic, chloroplastic-like isoform X1 [Cucurbita maxima]5.0e-3461.42Show/hide
Query:  MEIARKIRDKVHAIFVPVGSGS--------------QVLIFGVQLDEENSMAQALHFGEIVRVKDIDHFADGIAVKQVGDEAFRICWELVDDIILVNKHL
        MEI R+IR K+HAIFVP+G G                V +FGV+ +++NSMAQAL+ GEIV V DI HFADG+AV+QVGDE FRIC+EL+DD+ILV K  
Subjt:  MEIARKIRDKVHAIFVPVGSGS--------------QVLIFGVQLDEENSMAQALHFGEIVRVKDIDHFADGIAVKQVGDEAFRICWELVDDIILVNKHL

Query:  VAVAMKDMFNDERSILEPSGALSIAAA
        ++ A+KDMFND R+ILEPSGALSIAAA
Subjt:  VAVAMKDMFNDERSILEPSGALSIAAA

XP_022977241.1 threonine dehydratase biosynthetic, chloroplastic-like isoform X2 [Cucurbita maxima]5.0e-3461.42Show/hide
Query:  MEIARKIRDKVHAIFVPVGSGS--------------QVLIFGVQLDEENSMAQALHFGEIVRVKDIDHFADGIAVKQVGDEAFRICWELVDDIILVNKHL
        MEI R+IR K+HAIFVP+G G                V +FGV+ +++NSMAQAL+ GEIV V DI HFADG+AV+QVGDE FRIC+EL+DD+ILV K  
Subjt:  MEIARKIRDKVHAIFVPVGSGS--------------QVLIFGVQLDEENSMAQALHFGEIVRVKDIDHFADGIAVKQVGDEAFRICWELVDDIILVNKHL

Query:  VAVAMKDMFNDERSILEPSGALSIAAA
        ++ A+KDMFND R+ILEPSGALSIAAA
Subjt:  VAVAMKDMFNDERSILEPSGALSIAAA

XP_023543427.1 threonine dehydratase biosynthetic, chloroplastic-like [Cucurbita pepo subsp. pepo]1.4e-3360.63Show/hide
Query:  MEIARKIRDKVHAIFVPVGSGS--------------QVLIFGVQLDEENSMAQALHFGEIVRVKDIDHFADGIAVKQVGDEAFRICWELVDDIILVNKHL
        MEI R+IR K+HAIFVP+G G                V +FGV+ +++NSMAQAL+ GEIV V DI HFADG+AV+QVG+E FRIC+EL+DD+ILV K  
Subjt:  MEIARKIRDKVHAIFVPVGSGS--------------QVLIFGVQLDEENSMAQALHFGEIVRVKDIDHFADGIAVKQVGDEAFRICWELVDDIILVNKHL

Query:  VAVAMKDMFNDERSILEPSGALSIAAA
        ++ A+KDMFND R+ILEPSGALSIAAA
Subjt:  VAVAMKDMFNDERSILEPSGALSIAAA

TrEMBL top hitse value%identityAlignment
A0A5A7SJ32 Threonine dehydratase5.9e-3360.63Show/hide
Query:  MEIARKIRDKVHAIFVPVGSGS--------------QVLIFGVQLDEENSMAQALHFGEIVRVKDIDHFADGIAVKQVGDEAFRICWELVDDIILVNKHL
        MEI R++R K+HAI VP+G G               +V +FGV+ ++ENSMAQAL+  EIV V DI HFADG+AV+QVGDE FRIC EL+DD+ILV K  
Subjt:  MEIARKIRDKVHAIFVPVGSGS--------------QVLIFGVQLDEENSMAQALHFGEIVRVKDIDHFADGIAVKQVGDEAFRICWELVDDIILVNKHL

Query:  VAVAMKDMFNDERSILEPSGALSIAAA
        ++ A+KDMF+DERSILEPSGALSIAAA
Subjt:  VAVAMKDMFNDERSILEPSGALSIAAA

A0A5D3C7Q3 Threonine dehydratase5.9e-3360.63Show/hide
Query:  MEIARKIRDKVHAIFVPVGSGS--------------QVLIFGVQLDEENSMAQALHFGEIVRVKDIDHFADGIAVKQVGDEAFRICWELVDDIILVNKHL
        MEI R++R K+HAI VP+G G               +V +FGV+ ++ENSMAQAL+  EIV V DI HFADG+AV+QVGDE FRIC EL+DD+ILV K  
Subjt:  MEIARKIRDKVHAIFVPVGSGS--------------QVLIFGVQLDEENSMAQALHFGEIVRVKDIDHFADGIAVKQVGDEAFRICWELVDDIILVNKHL

Query:  VAVAMKDMFNDERSILEPSGALSIAAA
        ++ A+KDMF+DERSILEPSGALSIAAA
Subjt:  VAVAMKDMFNDERSILEPSGALSIAAA

A0A6J1ECR5 Threonine dehydratase2.0e-3359.84Show/hide
Query:  MEIARKIRDKVHAIFVPVGSGS--------------QVLIFGVQLDEENSMAQALHFGEIVRVKDIDHFADGIAVKQVGDEAFRICWELVDDIILVNKHL
        MEI R+IR K+HAIFVP+G G                V +FGV+ +++NSMAQAL+ GEIV V DI HFADG+AV+QVG+E FRIC+EL+DD+ILV K  
Subjt:  MEIARKIRDKVHAIFVPVGSGS--------------QVLIFGVQLDEENSMAQALHFGEIVRVKDIDHFADGIAVKQVGDEAFRICWELVDDIILVNKHL

Query:  VAVAMKDMFNDERSILEPSGALSIAAA
        ++ A+KDMFND R+ILEPSGALSIA A
Subjt:  VAVAMKDMFNDERSILEPSGALSIAAA

A0A6J1IJC6 Threonine dehydratase2.4e-3461.42Show/hide
Query:  MEIARKIRDKVHAIFVPVGSGS--------------QVLIFGVQLDEENSMAQALHFGEIVRVKDIDHFADGIAVKQVGDEAFRICWELVDDIILVNKHL
        MEI R+IR K+HAIFVP+G G                V +FGV+ +++NSMAQAL+ GEIV V DI HFADG+AV+QVGDE FRIC+EL+DD+ILV K  
Subjt:  MEIARKIRDKVHAIFVPVGSGS--------------QVLIFGVQLDEENSMAQALHFGEIVRVKDIDHFADGIAVKQVGDEAFRICWELVDDIILVNKHL

Query:  VAVAMKDMFNDERSILEPSGALSIAAA
        ++ A+KDMFND R+ILEPSGALSIAAA
Subjt:  VAVAMKDMFNDERSILEPSGALSIAAA

A0A6J1ILR7 Threonine dehydratase2.4e-3461.42Show/hide
Query:  MEIARKIRDKVHAIFVPVGSGS--------------QVLIFGVQLDEENSMAQALHFGEIVRVKDIDHFADGIAVKQVGDEAFRICWELVDDIILVNKHL
        MEI R+IR K+HAIFVP+G G                V +FGV+ +++NSMAQAL+ GEIV V DI HFADG+AV+QVGDE FRIC+EL+DD+ILV K  
Subjt:  MEIARKIRDKVHAIFVPVGSGS--------------QVLIFGVQLDEENSMAQALHFGEIVRVKDIDHFADGIAVKQVGDEAFRICWELVDDIILVNKHL

Query:  VAVAMKDMFNDERSILEPSGALSIAAA
        ++ A+KDMFND R+ILEPSGALSIAAA
Subjt:  VAVAMKDMFNDERSILEPSGALSIAAA

SwissProt top hitse value%identityAlignment
A0FKE6 Threonine dehydratase 1 biosynthetic, chloroplastic5.7e-2543.31Show/hide
Query:  MEIARKIRDKVHAIFVPVGSGS--------------QVLIFGVQLDEENSMAQALHFGEIVRVKDIDHFADGIAVKQVGDEAFRICWELVDDIILVNKHL
        MEI R+++D +HAIFVPVG G                + I GV+  + N++A +LH G+ V +  +  FADG+AVK VG+E +R+C EL+D ++LV +  
Subjt:  MEIARKIRDKVHAIFVPVGSGS--------------QVLIFGVQLDEENSMAQALHFGEIVRVKDIDHFADGIAVKQVGDEAFRICWELVDDIILVNKHL

Query:  VAVAMKDMFNDERSILEPSGALSIAAA
        +  ++KDMF ++RSILEP+GAL++A A
Subjt:  VAVAMKDMFNDERSILEPSGALSIAAA

O42615 Threonine dehydratase, mitochondrial9.4e-2038.93Show/hide
Query:  MEIARKIR-DKVHAIFVPVGSGS--------------QVLIFGVQLDEENSMAQALHFGEIVRVKDIDHFADGIAVKQVGDEAFRICWELVDDIILVNKH
        +E+ R+I  + + AIFV +G G               QV I GV+  + N+M Q+L  GE + + ++  FADG AVK +G+E FR+C ++VD+I+LV+  
Subjt:  MEIARKIR-DKVHAIFVPVGSGS--------------QVLIFGVQLDEENSMAQALHFGEIVRVKDIDHFADGIAVKQVGDEAFRICWELVDDIILVNKH

Query:  LVAVAMKDMFNDERSILEPSGALSIAAAIRH
         +  A+KD+F + RSI+EP+GALS+A  +++
Subjt:  LVAVAMKDMFNDERSILEPSGALSIAAAIRH

P53607 L-threonine dehydratase biosynthetic IlvA1.6e-2241.73Show/hide
Query:  MEIARKIRDKVHAIFVPVGSGS--------------QVLIFGVQLDEENSMAQALHFGEIVRVKDIDHFADGIAVKQVGDEAFRICWELVDDIILVNKHL
        MEI R+ +  +HAIFVP+G G               ++ + GVQ ++  +MAQ+L  G+ V + ++  FADG AVK VG+E FR+C E +D ++ V+   
Subjt:  MEIARKIRDKVHAIFVPVGSGS--------------QVLIFGVQLDEENSMAQALHFGEIVRVKDIDHFADGIAVKQVGDEAFRICWELVDDIILVNKHL

Query:  VAVAMKDMFNDERSILEPSGALSIAAA
        +  A+KD+F D RS+LEPSGAL++A A
Subjt:  VAVAMKDMFNDERSILEPSGALSIAAA

Q9AXU4 Threonine dehydratase5.9e-2242.06Show/hide
Query:  EIARKIRDKVHAIFVPVGSGSQVL--------------IFGVQLDEENSMAQALHFGEIVRVKDIDHFADGIAVKQVGDEAFRICWELVDDIILVNKHLV
        EI R+++D +HA+FVPVG G  +               I GV+    +SM Q+L+ GE V+++ +D+FADG+AV  VG+E FR+C +L+D ++LV+   +
Subjt:  EIARKIRDKVHAIFVPVGSGSQVL--------------IFGVQLDEENSMAQALHFGEIVRVKDIDHFADGIAVKQVGDEAFRICWELVDDIILVNKHLV

Query:  AVAMKDMFNDERSILEPSGALSIAAA
        + A+KD++++ R+ILE SGAL+IA A
Subjt:  AVAMKDMFNDERSILEPSGALSIAAA

Q9ZSS6 Threonine dehydratase biosynthetic, chloroplastic1.8e-2344.09Show/hide
Query:  MEIARKIRDKVHAIFVPVGSGS--------------QVLIFGVQLDEENSMAQALHFGEIVRVKDIDHFADGIAVKQVGDEAFRICWELVDDIILVNKHL
        MEI R+ +  +HAIFVPVG G               +V I GV+  + N+MA +LH GE V +  +  FADG+AVK+VG+E FRI   L+D ++LV +  
Subjt:  MEIARKIRDKVHAIFVPVGSGS--------------QVLIFGVQLDEENSMAQALHFGEIVRVKDIDHFADGIAVKQVGDEAFRICWELVDDIILVNKHL

Query:  VAVAMKDMFNDERSILEPSGALSIAAA
        +  ++KDMF ++R+ILEP+GAL++A A
Subjt:  VAVAMKDMFNDERSILEPSGALSIAAA

Arabidopsis top hitse value%identityAlignment
AT3G10050.1 L-O-methylthreonine resistant 11.3e-2444.09Show/hide
Query:  MEIARKIRDKVHAIFVPVGSGS--------------QVLIFGVQLDEENSMAQALHFGEIVRVKDIDHFADGIAVKQVGDEAFRICWELVDDIILVNKHL
        MEI R+ +  +HAIFVPVG G               +V I GV+  + N+MA +LH GE V +  +  FADG+AVK+VG+E FRI   L+D ++LV +  
Subjt:  MEIARKIRDKVHAIFVPVGSGS--------------QVLIFGVQLDEENSMAQALHFGEIVRVKDIDHFADGIAVKQVGDEAFRICWELVDDIILVNKHL

Query:  VAVAMKDMFNDERSILEPSGALSIAAA
        +  ++KDMF ++R+ILEP+GAL++A A
Subjt:  VAVAMKDMFNDERSILEPSGALSIAAA

AT4G11640.1 serine racemase1.8e-0526.32Show/hide
Query:  MEIARKIRDKVHAIFVPVGSGSQVLIFGVQLDEE----------------NSMAQALHFGEIVRVKDIDHFADGIAVKQVGDEAFRICWELVDDIILVNK
        +E+  +I++ + AI VP+  G   LI GV L  +                +  AQ+   G+I+ +   +  ADG+    +GD  + +  +LVDD++ + +
Subjt:  MEIARKIRDKVHAIFVPVGSGSQVLIFGVQLDEE----------------NSMAQALHFGEIVRVKDIDHFADGIAVKQVGDEAFRICWELVDDIILVNK

Query:  HLVAVAMKDMFNDERSILEPSGALSIAAAIRHT
          +  AMK  +   +  +EPSGA+ +AA + ++
Subjt:  HLVAVAMKDMFNDERSILEPSGALSIAAAIRHT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATTGCACGTAAAATTAGGGACAAAGTTCATGCCATTTTTGTGCCTGTTGGAAGTGGCAGTCAAGTATTGATTTTTGGGGTGCAGCTAGATGAGGAAAACTCAAT
GGCGCAAGCGTTACATTTTGGCGAAATAGTGAGGGTGAAAGATATTGATCATTTTGCAGATGGAATAGCTGTTAAACAAGTTGGCGACGAGGCTTTTAGAATTTGCTGGG
AACTCGTCGATGATATTATTCTTGTTAACAAACACTTGGTAGCCGTTGCAATGAAGGATATGTTTAACGATGAGAGGAGCATTTTGGAACCATCAGGTGCTCTTTCAATT
GCTGCAGCTATAAGGCATACTGCAGTCACAATAACATTCGAGGACAAGAAATTGTGGCAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAATTGCACGTAAAATTAGGGACAAAGTTCATGCCATTTTTGTGCCTGTTGGAAGTGGCAGTCAAGTATTGATTTTTGGGGTGCAGCTAGATGAGGAAAACTCAAT
GGCGCAAGCGTTACATTTTGGCGAAATAGTGAGGGTGAAAGATATTGATCATTTTGCAGATGGAATAGCTGTTAAACAAGTTGGCGACGAGGCTTTTAGAATTTGCTGGG
AACTCGTCGATGATATTATTCTTGTTAACAAACACTTGGTAGCCGTTGCAATGAAGGATATGTTTAACGATGAGAGGAGCATTTTGGAACCATCAGGTGCTCTTTCAATT
GCTGCAGCTATAAGGCATACTGCAGTCACAATAACATTCGAGGACAAGAAATTGTGGCAGTGA
Protein sequenceShow/hide protein sequence
MEIARKIRDKVHAIFVPVGSGSQVLIFGVQLDEENSMAQALHFGEIVRVKDIDHFADGIAVKQVGDEAFRICWELVDDIILVNKHLVAVAMKDMFNDERSILEPSGALSI
AAAIRHTAVTITFEDKKLWQ