CuGenDBv2

Gene ID	Sed0020497
Organism	Sechium edule (Chayote v1)
Description	classical arabinogalactan protein 25
Genome location	LG04:33027417..33028176
RNA-Seq Expression	Sed0020497
Synteny	Sed0020497
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6575045.1 hypothetical protein SDJN03_25684, partial [Cucurbita argyrosperma subsp. sororia]

4.0e-14

55.2

Show/hide

Query:  SFWYSFSSALIIMAFMASSFLP----ASGSAASSFEELSPDIAPLLPSSGGG-PA------TIPSNPSPPNPDDLEAPGPN----PPFPLPGSFTAPKHL
        SFWY    A +IMAFMAS  L      +   +SSF+ELSPDIAPLLPSSGG  P+      TIPSNPSPPNPD+ EAPGP+     P  LPGSF APK L
Subjt:  SFWYSFSSALIIMAFMASSFLP----ASGSAASSFEELSPDIAPLLPSSGGG-PA------TIPSNPSPPNPDDLEAPGPN----PPFPLPGSFTAPKHL

Query:  PCSSSWIILLLFGSTLYYAFSLLLH
        P  S+   LLL  +   +AF L LH
Subjt:  PCSSSWIILLLFGSTLYYAFSLLLH

KAG7026286.1 hypothetical protein SDJN02_12787, partial [Cucurbita argyrosperma subsp. argyrosperma]

6.9e-14

51.2

Show/hide

Query:  FWYSFSSALIIMAFMASSFLP----ASGSAASSFEELSPDIAPLLPSSG-------GGPATIPSNPSPPNPDDLEAPGPNP----PFPLPGSFTAPK-HL
        FWY    + +I AF+A+  L      S + +S F+ELSP+IAPLLPS+G       G   TIPSNPSPPNPD+ EAP P+P    PF LP SF APK  L
Subjt:  FWYSFSSALIIMAFMASSFLP----ASGSAASSFEELSPDIAPLLPSSG-------GGPATIPSNPSPPNPDDLEAPGPNP----PFPLPGSFTAPK-HL

Query:  PCSSSWIILLLFGSTLYYAFSLLLH
        PCSS+ ++LL       +AFSLLLH
Subjt:  PCSSSWIILLLFGSTLYYAFSLLLH

XP_008458497.1 PREDICTED: classical arabinogalactan protein 25 [Cucumis melo]

1.4e-14

51.59

Show/hide

Query:  SFWYSFSSALIIMAFMASSFLP----ASGSAASSFEELSPDIAPLLPS--------SGGGPATIPSNPSPPNPDDLEAPGPN----PPFPLPGSFTAPKH
        SFWY    + +IM FMAS  L      +   +S F+ELSP+IAPLLPS        +G    TIPSNPSPPNPDD EA GP+     PF LPGSF  P  
Subjt:  SFWYSFSSALIIMAFMASSFLP----ASGSAASSFEELSPDIAPLLPS--------SGGGPATIPSNPSPPNPDDLEAPGPN----PPFPLPGSFTAPKH

Query:  LPCSSSWIILLLFGSTLYYAFSLLLH
        LPC S+W++LLL G  L  AFS+ LH
Subjt:  LPCSSSWIILLLFGSTLYYAFSLLLH

XP_011656664.1 classical arabinogalactan protein 25 [Cucumis sativus]

4.0e-14

50.79

Show/hide

Query:  SFWYSFSSALIIMAFMASSFLP----ASGSAASSFEELSPDIAPLLPS--------SGGGPATIPSNPSPPNPDDLEAPGPN----PPFPLPGSFTAPKH
        SFWY    + +IM FMAS  L      +   +S F+ELSP+IAPLLPS        +G    TIPSNPSPPNPDD EA GP+     PF LPGSF  P  
Subjt:  SFWYSFSSALIIMAFMASSFLP----ASGSAASSFEELSPDIAPLLPS--------SGGGPATIPSNPSPPNPDDLEAPGPN----PPFPLPGSFTAPKH

Query:  LPCSSSWIILLLFGSTLYYAFSLLLH
        LPC S+W++LLL G  L   FS+ LH
Subjt:  LPCSSSWIILLLFGSTLYYAFSLLLH

XP_023547783.1 classical arabinogalactan protein 25-like [Cucurbita pepo subsp. pepo]

1.1e-14

Show/hide

Query:  SFWYSFSSALIIMAFMASSFLP----ASGSAASSFEELSPDIAPLLPSSGGG-PA------TIPSNPSPPNPDDLEAPGPN----PPFPLPGSFTAPKHL
        SFWY    A +IMAFMAS  L      +   +SSF+ELSPDIAPLLPSSGG  P+      TIPSNPSPPNPD+ EAPGP+     PF LPGSF APK L
Subjt:  SFWYSFSSALIIMAFMASSFLP----ASGSAASSFEELSPDIAPLLPSSGGG-PA------TIPSNPSPPNPDDLEAPGPN----PPFPLPGSFTAPKHL

Query:  PCSSSWIILLLFGSTLYYAFSLLLH
        P  S+   LLL  +   +AF L LH
Subjt:  PCSSSWIILLLFGSTLYYAFSLLLH

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KBF8 Uncharacterized protein

2.0e-14

50.79

Show/hide

Query:  SFWYSFSSALIIMAFMASSFLP----ASGSAASSFEELSPDIAPLLPS--------SGGGPATIPSNPSPPNPDDLEAPGPN----PPFPLPGSFTAPKH
        SFWY    + +IM FMAS  L      +   +S F+ELSP+IAPLLPS        +G    TIPSNPSPPNPDD EA GP+     PF LPGSF  P  
Subjt:  SFWYSFSSALIIMAFMASSFLP----ASGSAASSFEELSPDIAPLLPS--------SGGGPATIPSNPSPPNPDDLEAPGPN----PPFPLPGSFTAPKH

Query:  LPCSSSWIILLLFGSTLYYAFSLLLH
        LPC S+W++LLL G  L   FS+ LH
Subjt:  LPCSSSWIILLLFGSTLYYAFSLLLH

A0A1S3C8K2 classical arabinogalactan protein 25

6.7e-15

51.59

Show/hide

Query:  SFWYSFSSALIIMAFMASSFLP----ASGSAASSFEELSPDIAPLLPS--------SGGGPATIPSNPSPPNPDDLEAPGPN----PPFPLPGSFTAPKH
        SFWY    + +IM FMAS  L      +   +S F+ELSP+IAPLLPS        +G    TIPSNPSPPNPDD EA GP+     PF LPGSF  P  
Subjt:  SFWYSFSSALIIMAFMASSFLP----ASGSAASSFEELSPDIAPLLPS--------SGGGPATIPSNPSPPNPDDLEAPGPN----PPFPLPGSFTAPKH

Query:  LPCSSSWIILLLFGSTLYYAFSLLLH
        LPC S+W++LLL G  L  AFS+ LH
Subjt:  LPCSSSWIILLLFGSTLYYAFSLLLH

A0A5A7SSC0 Classical arabinogalactan protein 25

6.7e-15

51.59

Show/hide

Query:  SFWYSFSSALIIMAFMASSFLP----ASGSAASSFEELSPDIAPLLPS--------SGGGPATIPSNPSPPNPDDLEAPGPN----PPFPLPGSFTAPKH
        SFWY    + +IM FMAS  L      +   +S F+ELSP+IAPLLPS        +G    TIPSNPSPPNPDD EA GP+     PF LPGSF  P  
Subjt:  SFWYSFSSALIIMAFMASSFLP----ASGSAASSFEELSPDIAPLLPS--------SGGGPATIPSNPSPPNPDDLEAPGPN----PPFPLPGSFTAPKH

Query:  LPCSSSWIILLLFGSTLYYAFSLLLH
        LPC S+W++LLL G  L  AFS+ LH
Subjt:  LPCSSSWIILLLFGSTLYYAFSLLLH

A0A6J1H4T0 classical arabinogalactan protein 25-like

1.3e-13

54.4

Show/hide

Query:  SFWYSFSSALIIMAFMASSFLP----ASGSAASSFEELSPDIAPLLPSSGGG-PA------TIPSNPSPPNPDDLEAPGPN----PPFPLPGSFTAPKHL
        SFWY    A +IMA MAS  L      +   +SSF+ELSPDIAPLLPSSGG  P+      TIPSNPSPPNPD+ EAPGP+     P  LPGSF APK L
Subjt:  SFWYSFSSALIIMAFMASSFLP----ASGSAASSFEELSPDIAPLLPSSGGG-PA------TIPSNPSPPNPDDLEAPGPN----PPFPLPGSFTAPKHL

Query:  PCSSSWIILLLFGSTLYYAFSLLLH
        P  S+   LLL  +   +AF L LH
Subjt:  PCSSSWIILLLFGSTLYYAFSLLLH

A0A6J1KVY5 classical arabinogalactan protein 25-like

1.7e-13

52.8

Show/hide

Query:  SFWYSFSSALIIMAFMASSFLP----ASGSAASSFEELSPDIAPLLPSSGGG-PA------TIPSNPSPPNPDDLEAPGPN----PPFPLPGSFTAPKHL
        SFWY    A +IMAFMAS  L      +   + SF+ELSPDIAPLLPS+GG  P+      TIPSNPSPPNPD+ EAPGP+     PF LPGSF APK L
Subjt:  SFWYSFSSALIIMAFMASSFLP----ASGSAASSFEELSPDIAPLLPSSGGG-PA------TIPSNPSPPNPDDLEAPGPN----PPFPLPGSFTAPKHL

Query:  PCSSSWIILLLFGSTLYYAFSLLLH
        P  S+ ++L        +AF L LH
Subjt:  PCSSSWIILLLFGSTLYYAFSLLLH

SwissProt top hits

e value

%identity

Alignment

Q6NN00 Classical arabinogalactan protein 25

2.3e-04

37.17

Show/hide

Query:  YSFSSALIIMAFMASSFLPASGSAASSFEELSPDIAPLLPSSG------GGPATIPSNPSPPNPDDLEAPGPNP----PFPLP--GSFTAPKHLPCSSSW
        +SF + L+I+       L +S    S  ++LSP+IAPLLPS G       G  TIPS+PSPP+PD  +   P+P    PF  P   S + P  LP +   
Subjt:  YSFSSALIIMAFMASSFLPASGSAASSFEELSPDIAPLLPSSG------GGPATIPSNPSPPNPDDLEAPGPNP----PFPLP--GSFTAPKHLPCSSSW

Query:  IILLLFGSTLYYA
        +I L+  S  + A
Subjt:  IILLLFGSTLYYA

Arabidopsis top hits

e value

%identity

Alignment

AT5G18690.1 arabinogalactan protein 25

1.6e-05

37.17

Show/hide

Query:  YSFSSALIIMAFMASSFLPASGSAASSFEELSPDIAPLLPSSG------GGPATIPSNPSPPNPDDLEAPGPNP----PFPLP--GSFTAPKHLPCSSSW
        +SF + L+I+       L +S    S  ++LSP+IAPLLPS G       G  TIPS+PSPP+PD  +   P+P    PF  P   S + P  LP +   
Subjt:  YSFSSALIIMAFMASSFLPASGSAASSFEELSPDIAPLLPSSG------GGPATIPSNPSPPNPDDLEAPGPNP----PFPLP--GSFTAPKHLPCSSSW

Query:  IILLLFGSTLYYA
        +I L+  S  + A
Subjt:  IILLLFGSTLYYA

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCCTCCTCTTCCTCCTCTTCCTCCTTCTCCTTTTGGTATTCTTTCTCATCAGCACTCATCATTATGGCTTTCATGGCCTCCTCTTTCCTTCCCGCCTCGGGCTCGGC
TGCTTCGTCTTTCGAAGAACTCTCCCCCGACATTGCTCCGCTGCTGCCTTCCTCGGGCGGTGGTCCCGCAACCATTCCCTCGAACCCGAGCCCTCCAAATCCAGACGACC
TCGAGGCACCCGGCCCCAATCCCCCATTCCCCCTACCAGGTTCCTTTACAGCTCCCAAACACCTCCCTTGCTCTTCTAGTTGGATTATTCTTCTCCTGTTTGGCTCAACA
CTGTACTATGCCTTCTCTCTACTCTTACATTGA

mRNA sequence

Show/hide mRNA sequence

TAGAGATTCCACTAATTTCATCATCATTGGAATTTAGAATGGCCTCCTCTTCCTCCTCTTCCTCCTTCTCCTTTTGGTATTCTTTCTCATCAGCACTCATCATTATGGCT
TTCATGGCCTCCTCTTTCCTTCCCGCCTCGGGCTCGGCTGCTTCGTCTTTCGAAGAACTCTCCCCCGACATTGCTCCGCTGCTGCCTTCCTCGGGCGGTGGTCCCGCAAC
CATTCCCTCGAACCCGAGCCCTCCAAATCCAGACGACCTCGAGGCACCCGGCCCCAATCCCCCATTCCCCCTACCAGGTTCCTTTACAGCTCCCAAACACCTCCCTTGCT
CTTCTAGTTGGATTATTCTTCTCCTGTTTGGCTCAACACTGTACTATGCCTTCTCTCTACTCTTACATTGAGTTTCCCCTTTGTACTTGTATTTCTTTATTTCATTTTTC
TTATTTTCTACTTTTAGTACAAGATATAATGCATATATAGCATAGTCTGTTTCACTCATTTTTTATGAGCTGCTTGATTTTCTGCCATCATTTTGAATTTGGGAATATCT
GCAGATTTCTTTGGCACTGAAACTTATGTTTTTGTTTTTCTTTTCTTTTTTTTGTATTTACCACTTTTAGTTAAATTTCTTCAATCATAGATAATGTCCTAATAAATCCT
AAAAAAATATCTAACAAATCTCTTAACAAACTCTAGATGTTTAAATATTAAATCTATGAATTATATTTCTTAATTCCTAGCAAACATTAGTACTACCTGC

Protein sequence

Show/hide protein sequence

MASSSSSSSFSFWYSFSSALIIMAFMASSFLPASGSAASSFEELSPDIAPLLPSSGGGPATIPSNPSPPNPDDLEAPGPNPPFPLPGSFTAPKHLPCSSSWIILLLFGST
LYYAFSLLLH

Sed0020497 (gene) of Chayote v1 genome