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Sed0020498 (gene) of Chayote v1 genome

Gene IDSed0020498
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
Genome locationLG06:19741414..19741758
RNA-Seq ExpressionSed0020498
SyntenySed0020498
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8646857.1 hypothetical protein Csa_020829, partial [Cucumis sativus]1.6e-1556.25Show/hide
Query:  MNQDGRDGEEISEARWREAQCGVINHLTQVVNALSHRLERMEVALGN-PQGREDNFNYEGVENEDGEDNVNLLAGYNPRGGRVLGRWGRGGRRRGREIIA
        MNQ  ++  EISEAR  EAQ G I  LTQV+N L+ RL+R+EVAL N  QG+  N   EGVENE+ EDN  LLA  N RG RVLG+  R  RR GR+++ 
Subjt:  MNQDGRDGEEISEARWREAQCGVINHLTQVVNALSHRLERMEVALGN-PQGREDNFNYEGVENEDGEDNVNLLAGYNPRGGRVLGRWGRGGRRRGREIIA

Query:  PRRIERENQYER
         RR+ERE Q ER
Subjt:  PRRIERENQYER

XP_022925325.1 uncharacterized protein LOC111432615 [Cucurbita moschata]3.3e-1860.2Show/hide
Query:  MNQDGRDGEEISEARWREAQCGVINHLTQVVNALSHRLERMEVALGNPQGREDNFNYEGVENEDGEDNVNLLAGYNPRGGRVLGRWGRGGRRRGREII
        MNQD  +G EI+EARWREAQ G I  L QV++ L+ R+ER+++ALGN QGRE   N EGVENE+ +DNV LLAG++PRGGR +GR GRG  RR  E +
Subjt:  MNQDGRDGEEISEARWREAQCGVINHLTQVVNALSHRLERMEVALGNPQGREDNFNYEGVENEDGEDNVNLLAGYNPRGGRVLGRWGRGGRRRGREII

XP_022929948.1 uncharacterized protein LOC111436410 [Cucurbita moschata]1.7e-1765.43Show/hide
Query:  MNQDGRDGEEISEARWREAQCGVINHLTQVVNALSHRLERMEVALGNPQGREDNFNYEGVENEDGEDNVNLLAGYNPRGGR
        MNQDG +G EI+EARWREAQ G I  L QV++ L+ R+ER+E+ALGN QGRE   N EGVENE+ +DNV LLAG++PRGGR
Subjt:  MNQDGRDGEEISEARWREAQCGVINHLTQVVNALSHRLERMEVALGNPQGREDNFNYEGVENEDGEDNVNLLAGYNPRGGR

XP_023534142.1 uncharacterized protein LOC111795765 [Cucurbita pepo subsp. pepo]1.4e-2768.14Show/hide
Query:  MNQDGRDGEEISEARWREAQCGVINHLTQVVNALSHRLERMEVALGNPQGREDNFNYEGVENEDGEDNVNLLAGYNPRGGRVLGRWGRGG-RRRGREIIA
        MNQDG +G EI+EARWREAQ G I  L QV++ L+ R+ER+E+ALGN QGRE   N EGVENE+ +DNV LLAG++PRGGR +GR GRG  RRRGREI+A
Subjt:  MNQDGRDGEEISEARWREAQCGVINHLTQVVNALSHRLERMEVALGNPQGREDNFNYEGVENEDGEDNVNLLAGYNPRGGRVLGRWGRGG-RRRGREIIA

Query:  PRRIERENQYERE
        P+RIERE QYERE
Subjt:  PRRIERENQYERE

XP_038888883.1 uncharacterized protein LOC120078660 [Benincasa hispida]5.3e-1657.66Show/hide
Query:  MNQDGRDGEEISEARWREAQCGVINHLTQVVNALSHRLERMEVALGNPQGREDNFNYEGVENEDGEDNVNLLAGYNPRGGRVLGRWGRGGRRRGREIIAP
        M+Q   D  E SEAR+REAQ GVI  LT+VV +L  R+ERMEVAL NPQ  E   N E  +NE+ +DN  LL G N RG  VLGR GR GRRR R I+ P
Subjt:  MNQDGRDGEEISEARWREAQCGVINHLTQVVNALSHRLERMEVALGNPQGREDNFNYEGVENEDGEDNVNLLAGYNPRGGRVLGRWGRGGRRRGREIIAP

Query:  RRIERENQYER
        R +ERE Q ER
Subjt:  RRIERENQYER

TrEMBL top hitse value%identityAlignment
A0A0A0KC00 Uncharacterized protein8.3e-1553.57Show/hide
Query:  MNQDGRDGEEISEARWREAQCGVINHLTQVVNALSHRLERMEVALGN-PQGREDNFNYEGVENEDGEDNVNLLAGYNPRGGRVLGRWGRGGRRRGREIIA
        MN+  ++  +ISEA+  EAQ G I  LTQV+N L++RL+RMEVAL N  QG   N   EGVENE+ EDN   LAG NPRG RVLG+  R  RR  R ++ 
Subjt:  MNQDGRDGEEISEARWREAQCGVINHLTQVVNALSHRLERMEVALGN-PQGREDNFNYEGVENEDGEDNVNLLAGYNPRGGRVLGRWGRGGRRRGREIIA

Query:  PRRIERENQYER
         RR+E E+Q ER
Subjt:  PRRIERENQYER

A0A0A0L0S3 Uncharacterized protein2.0e-0856.63Show/hide
Query:  MNQDGRDGEEISEARWREAQCGVINHLTQVVNALSHRLERMEVALGN-PQGREDNFNYEGVENEDGEDNVNLLAGYNPRGGRV
        MNQ  ++  EISEAR  EAQ G I  LTQV+N L+ RL+RM VAL N  QG   N   EGVENE  EDN  LLA  NP   RV
Subjt:  MNQDGRDGEEISEARWREAQCGVINHLTQVVNALSHRLERMEVALGN-PQGREDNFNYEGVENEDGEDNVNLLAGYNPRGGRV

A0A6J1EHL9 uncharacterized protein LOC1114326151.6e-1860.2Show/hide
Query:  MNQDGRDGEEISEARWREAQCGVINHLTQVVNALSHRLERMEVALGNPQGREDNFNYEGVENEDGEDNVNLLAGYNPRGGRVLGRWGRGGRRRGREII
        MNQD  +G EI+EARWREAQ G I  L QV++ L+ R+ER+++ALGN QGRE   N EGVENE+ +DNV LLAG++PRGGR +GR GRG  RR  E +
Subjt:  MNQDGRDGEEISEARWREAQCGVINHLTQVVNALSHRLERMEVALGNPQGREDNFNYEGVENEDGEDNVNLLAGYNPRGGRVLGRWGRGGRRRGREII

A0A6J1ETN1 uncharacterized protein LOC1114364108.0e-1865.43Show/hide
Query:  MNQDGRDGEEISEARWREAQCGVINHLTQVVNALSHRLERMEVALGNPQGREDNFNYEGVENEDGEDNVNLLAGYNPRGGR
        MNQDG +G EI+EARWREAQ G I  L QV++ L+ R+ER+E+ALGN QGRE   N EGVENE+ +DNV LLAG++PRGGR
Subjt:  MNQDGRDGEEISEARWREAQCGVINHLTQVVNALSHRLERMEVALGNPQGREDNFNYEGVENEDGEDNVNLLAGYNPRGGR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCAAGATGGGAGAGATGGAGAGGAGATTAGTGAAGCTAGGTGGAGAGAAGCTCAATGTGGGGTCATTAATCATTTAACTCAAGTGGTTAATGCCTTAAGCCATAG
GTTGGAGCGAATGGAAGTAGCTTTAGGAAATCCTCAAGGGAGGGAGGATAACTTTAATTATGAAGGAGTTGAAAATGAAGATGGAGAAGATAATGTTAACCTCTTAGCGG
GATACAATCCACGGGGAGGGAGAGTTTTAGGTCGATGGGGACGAGGAGGAAGAAGAAGGGGTAGGGAAATTATAGCACCTAGAAGGATCGAAAGGGAGAACCAATATGAA
AGAGAAGTAGTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATCAAGATGGGAGAGATGGAGAGGAGATTAGTGAAGCTAGGTGGAGAGAAGCTCAATGTGGGGTCATTAATCATTTAACTCAAGTGGTTAATGCCTTAAGCCATAG
GTTGGAGCGAATGGAAGTAGCTTTAGGAAATCCTCAAGGGAGGGAGGATAACTTTAATTATGAAGGAGTTGAAAATGAAGATGGAGAAGATAATGTTAACCTCTTAGCGG
GATACAATCCACGGGGAGGGAGAGTTTTAGGTCGATGGGGACGAGGAGGAAGAAGAAGGGGTAGGGAAATTATAGCACCTAGAAGGATCGAAAGGGAGAACCAATATGAA
AGAGAAGTAGTGTAA
Protein sequenceShow/hide protein sequence
MNQDGRDGEEISEARWREAQCGVINHLTQVVNALSHRLERMEVALGNPQGREDNFNYEGVENEDGEDNVNLLAGYNPRGGRVLGRWGRGGRRRGREIIAPRRIERENQYE
REVV