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Sed0020505 (gene) of Chayote v1 genome

Gene IDSed0020505
OrganismSechium edule (Chayote v1)
DescriptionDynein light chain
Genome locationLG02:48785054..48787647
RNA-Seq ExpressionSed0020505
SyntenySed0020505
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0030286 - dynein complex (cellular component)
GO:0045505 - dynein intermediate chain binding (molecular function)
GO:0051959 - dynein light intermediate chain binding (molecular function)
InterPro domainsIPR001372 - Dynein light chain, type 1/2
IPR019763 - Dynein light chain, type 1/2, conserved site
IPR037177 - Dynein light chain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582205.1 hypothetical protein SDJN03_22207, partial [Cucurbita argyrosperma subsp. sororia]1.6e-4487.39Show/hide
Query:  MAKPESDDRKPSSAAAAAASAAVVGKKIVIKSADMFGDVQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYL
        M KPES+DR+ SS AAAAA+A    KKIVIKSADMFGD+QKEAVDIAIAAFEKHSVEKDVAEQIKK+FD+RHGPTWHCIVGRNFGSYVTHE+NHFVYFYL
Subjt:  MAKPESDDRKPSSAAAAAASAAVVGKKIVIKSADMFGDVQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYL

Query:  DQKAVLLFKSG
        DQKAVLLFKSG
Subjt:  DQKAVLLFKSG

XP_022945423.1 dynein light chain 1, cytoplasmic-like [Cucurbita moschata]4.8e-4688.29Show/hide
Query:  MAKPESDDRKPSSAAAAAASAAVVGKKIVIKSADMFGDVQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYL
        M KPES+DRKPSSAA        VGKKIVIKSADMFGD+QKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHC++GRNFGSYVTHETNHFVYFYL
Subjt:  MAKPESDDRKPSSAAAAAASAAVVGKKIVIKSADMFGDVQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYL

Query:  DQKAVLLFKSG
        DQKAVLLFKSG
Subjt:  DQKAVLLFKSG

XP_022973755.1 dynein light chain 1, cytoplasmic-like isoform X1 [Cucurbita maxima]4.8e-4688.29Show/hide
Query:  MAKPESDDRKPSSAAAAAASAAVVGKKIVIKSADMFGDVQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYL
        M KPES+DRKPSSAA        VGKKIVIKSADMFGD+QKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHC++GRNFGSYVTHETNHFVYFYL
Subjt:  MAKPESDDRKPSSAAAAAASAAVVGKKIVIKSADMFGDVQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYL

Query:  DQKAVLLFKSG
        DQKAVLLFKSG
Subjt:  DQKAVLLFKSG

XP_023526495.1 dynein light chain 1, cytoplasmic-like [Cucurbita pepo subsp. pepo]4.5e-4487.39Show/hide
Query:  MAKPESDDRKPSSAAAAAASAAVVGKKIVIKSADMFGDVQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYL
        M KPES+DRK SS A AAA      KKIVIKSADMFGD+QKEAVDIAIAAFEKHSVEKDVAEQIKKEFD+RHGPTWHCIVGRNFGSYVTHE+NHFVYFYL
Subjt:  MAKPESDDRKPSSAAAAAASAAVVGKKIVIKSADMFGDVQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYL

Query:  DQKAVLLFKSG
        DQKAVLLFKSG
Subjt:  DQKAVLLFKSG

XP_038904701.1 dynein light chain 1, cytoplasmic-like [Benincasa hispida]1.2e-4485.59Show/hide
Query:  MAKPESDDRKPSSAAAAAASAAVVGKKIVIKSADMFGDVQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYL
        M KPESDDRKPSSAAA       V KKIVIKSADMF D+QKEA+DIAIAAFEKHSVEKD+AEQIKK+FDK HGPTWHCIVGRNFGSYVTHETNHFVYFYL
Subjt:  MAKPESDDRKPSSAAAAAASAAVVGKKIVIKSADMFGDVQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYL

Query:  DQKAVLLFKSG
        DQKA+LLFKSG
Subjt:  DQKAVLLFKSG

TrEMBL top hitse value%identityAlignment
A0A6J1G0U9 Dynein light chain2.3e-4688.29Show/hide
Query:  MAKPESDDRKPSSAAAAAASAAVVGKKIVIKSADMFGDVQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYL
        M KPES+DRKPSSAA        VGKKIVIKSADMFGD+QKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHC++GRNFGSYVTHETNHFVYFYL
Subjt:  MAKPESDDRKPSSAAAAAASAAVVGKKIVIKSADMFGDVQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYL

Query:  DQKAVLLFKSG
        DQKAVLLFKSG
Subjt:  DQKAVLLFKSG

A0A6J1GVA3 Dynein light chain2.9e-4487.39Show/hide
Query:  MAKPESDDRKPSSAAAAAASAAVVGKKIVIKSADMFGDVQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYL
        M KPES+DRK SS AAAAA      KKIVIKSADMFGD+QKEAVDIAIAAFEKHSVEKDVAE IKKEFD+RHGPTWHCIVGRNFGSYVTHE+NHFVYFYL
Subjt:  MAKPESDDRKPSSAAAAAASAAVVGKKIVIKSADMFGDVQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYL

Query:  DQKAVLLFKSG
        DQKAVLLFKSG
Subjt:  DQKAVLLFKSG

A0A6J1IC60 Dynein light chain2.3e-4688.29Show/hide
Query:  MAKPESDDRKPSSAAAAAASAAVVGKKIVIKSADMFGDVQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYL
        M KPES+DRKPSSAA        VGKKIVIKSADMFGD+QKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHC++GRNFGSYVTHETNHFVYFYL
Subjt:  MAKPESDDRKPSSAAAAAASAAVVGKKIVIKSADMFGDVQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYL

Query:  DQKAVLLFKSG
        DQKAVLLFKSG
Subjt:  DQKAVLLFKSG

A0A6J1IQ69 Dynein light chain1.4e-4386.49Show/hide
Query:  MAKPESDDRKPSSAAAAAASAAVVGKKIVIKSADMFGDVQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYL
        M KPES+DRK SS AAAA       KKIVIKSADMFG +QKEAVDIAIAAFEKHSVEKDVAEQIKKEFD+RHGPTWHCIVGRNFGSYVTHE+NHFVYFYL
Subjt:  MAKPESDDRKPSSAAAAAASAAVVGKKIVIKSADMFGDVQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYL

Query:  DQKAVLLFKSG
        DQKAVLLFKSG
Subjt:  DQKAVLLFKSG

A0A6P4ASP5 Dynein light chain1.1e-4387.16Show/hide
Query:  KPESDDRKPSSAAAAAASAAVVGKKIVIKSADMFGDVQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQ
        K  SDDRKP SAAA    AAV GK+++IKSADMFGD+QKEAVDIAIAAFEK+SVEKDVAE IKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQ
Subjt:  KPESDDRKPSSAAAAAASAAVVGKKIVIKSADMFGDVQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQ

Query:  KAVLLFKSG
        KAVLLFKSG
Subjt:  KAVLLFKSG

SwissProt top hitse value%identityAlignment
Q22799 Dynein light chain 1, cytoplasmic1.7e-3067.42Show/hide
Query:  VVGKKIVIKSADMFGDVQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        +V +K VIK+ADM  D+Q++A+D A  A EK+++EKD+A  IKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  VVGKKIVIKSADMFGDVQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q3MHR3 Dynein light chain 2, cytoplasmic5.0e-3069.77Show/hide
Query:  KKIVIKSADMFGDVQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  D+Q++AVD A  A EK+++EKD+A  IKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KKIVIKSADMFGDVQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q78P75 Dynein light chain 2, cytoplasmic5.0e-3069.77Show/hide
Query:  KKIVIKSADMFGDVQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  D+Q++AVD A  A EK+++EKD+A  IKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KKIVIKSADMFGDVQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q96FJ2 Dynein light chain 2, cytoplasmic5.0e-3069.77Show/hide
Query:  KKIVIKSADMFGDVQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  D+Q++AVD A  A EK+++EKD+A  IKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KKIVIKSADMFGDVQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Q9D0M5 Dynein light chain 2, cytoplasmic5.0e-3069.77Show/hide
Query:  KKIVIKSADMFGDVQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
        +K VIK+ADM  D+Q++AVD A  A EK+++EKD+A  IKKEFDK++ PTWHCIVGRNFGSYVTHET HF+YFYL Q A+LLFKSG
Subjt:  KKIVIKSADMFGDVQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG

Arabidopsis top hitse value%identityAlignment
AT1G23220.1 Dynein light chain type 1 family protein1.2e-1358.49Show/hide
Query:  KDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKS
        K +A  +KK+FD  +GP WHCIVG +FGSYVTH T  F+YF +D+  VLLFK+
Subjt:  KDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKS

AT1G52240.2 RHO guanyl-nucleotide exchange factor 111.8e-1140Show/hide
Query:  KIVIKSADMFGDVQKEAVDIAIAAFEKHSVE--KDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK
        K +++ +DM   +Q +A+  A  A +   V   K +A  IKKEFD+R+G  W C+VG NFG + TH    F+YF L+    L+FK
Subjt:  KIVIKSADMFGDVQKEAVDIAIAAFEKHSVE--KDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK

AT3G16120.1 Dynein light chain type 1 family protein1.2e-1038.82Show/hide
Query:  KIVIKSADMFGDVQKEAVDIAIAAFEKHSV--EKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK
        K  ++  DM   +Q +A+ IA  + +   V     +A  IKKEFD+R+G  W C+VG NFG + TH    F+YF+L     L+FK
Subjt:  KIVIKSADMFGDVQKEAVDIAIAAFEKHSV--EKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFK

AT4G15930.1 Dynein light chain type 1 family protein6.1e-3976.19Show/hide
Query:  DDRKPSSAAAAAASAAVVGKKIVIKSADMFGDVQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVL
        DDR+ S     A+  A  GK+ VIKSADM  D+QKEA++IAI+AFEK+SVEKD+AE IKKEFDK+HG TWHCIVGRNFGSYVTHETNHFVYFYLDQKAVL
Subjt:  DDRKPSSAAAAAASAAVVGKKIVIKSADMFGDVQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVL

Query:  LFKSG
        LFKSG
Subjt:  LFKSG

AT5G20110.1 Dynein light chain type 1 family protein8.0e-1547.96Show/hide
Query:  AAAASAAVVGKKIVIKSADMFGDVQKEAVDIA---IAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKS
        AA   AA     + I +ADM G +Q  A   A   + + EK S  K +A  +KKEFDK +GP WHCIVG +FGS+VTH T  F+YF +D+  VLLFK+
Subjt:  AAAASAAVVGKKIVIKSADMFGDVQKEAVDIA---IAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAAGCCGGAATCCGACGATCGGAAACCTTCCTCTGCCGCCGCCGCCGCCGCCTCCGCCGCCGTGGTCGGCAAGAAAATCGTCATCAAGAGCGCCGATATGTTCGG
AGACGTGCAGAAGGAGGCCGTCGACATTGCCATAGCGGCATTTGAGAAGCATTCTGTCGAGAAGGACGTTGCCGAGCAGATAAAGAAGGAGTTTGATAAGCGCCATGGCC
CGACCTGGCATTGCATCGTCGGTCGTAATTTTGGTTCTTACGTGACACACGAGACGAACCATTTTGTTTACTTTTACCTGGATCAAAAAGCAGTTCTACTTTTCAAATCT
GGTTGA
mRNA sequenceShow/hide mRNA sequence
GAAAAAGAAAAAGAAAAGAAAAAGAACTGGGCCTGGGGAATCTTACAAGGAAACGCAGAGTGATATAGTGGCTGAGAGCGAAAGCCTGTCTTCTTCCTCAAACCTAAAAA
ACCTTCACAACTCCAATCGAAGCAATCCTGGACGTATAATGGCGAAGCCGGAATCCGACGATCGGAAACCTTCCTCTGCCGCCGCCGCCGCCGCCTCCGCCGCCGTGGTC
GGCAAGAAAATCGTCATCAAGAGCGCCGATATGTTCGGAGACGTGCAGAAGGAGGCCGTCGACATTGCCATAGCGGCATTTGAGAAGCATTCTGTCGAGAAGGACGTTGC
CGAGCAGATAAAGAAGGAGTTTGATAAGCGCCATGGCCCGACCTGGCATTGCATCGTCGGTCGTAATTTTGGTTCTTACGTGACACACGAGACGAACCATTTTGTTTACT
TTTACCTGGATCAAAAAGCAGTTCTACTTTTCAAATCTGGTTGATGATTGTTCTCCCCTTGACAAAGATGCCCACCTCTGCAAGTCTGCGATTAAGACAAGTCCTTGTAT
GTATAATCTAATCTGCTGCCACTATGTAAATCATTTGGTGTAGCATTTTTTATATTATAACTAAATATATCCCTGTTGGGTAGATTAAATGCTGAAACCCAAAATTCAAT
GTGCCATTTACATAAATGTCTCAAAAGGCTTCGTTGTTGATCAAAACTGGTTGCAGTACAGAACCAAGCTTTAAAAAAATGATTTACCA
Protein sequenceShow/hide protein sequence
MAKPESDDRKPSSAAAAAASAAVVGKKIVIKSADMFGDVQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKS
G