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Sed0020513 (gene) of Chayote v1 genome

Gene IDSed0020513
OrganismSechium edule (Chayote v1)
Description60S ribosomal protein L29
Genome locationLG09:2217075..2218375
RNA-Seq ExpressionSed0020513
SyntenySed0020513
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002673 - Ribosomal protein L29e


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_023000055.1 60S ribosomal protein L29-1 [Cucurbita maxima]4.6e-2295.08Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRNHRHTSTKGMDPKFLRNQRYAKKHNNKSGESATEEE
        MAKSKNHTAHNQSRKAHRNGIKKPR HRHTSTKGMDPKFLRNQRYAKKHNNKSGE+A+EEE
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRNHRHTSTKGMDPKFLRNQRYAKKHNNKSGESATEEE

XP_023000056.1 60S ribosomal protein L29-1-like [Cucurbita maxima]2.0e-2296.72Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRNHRHTSTKGMDPKFLRNQRYAKKHNNKSGESATEEE
        MAKSKNHTAHNQSRKAHRNGIKKPR HRHTSTKGMDPKFLRNQRYAKKHNNKSGES TEEE
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRNHRHTSTKGMDPKFLRNQRYAKKHNNKSGESATEEE

XP_023514068.1 60S ribosomal protein L29-1-like [Cucurbita pepo subsp. pepo]5.9e-2295.08Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRNHRHTSTKGMDPKFLRNQRYAKKHNNKSGESATEEE
        MAKSKNHTAHNQSRKAHRNGIKKPR HRHTSTKGMDPKFLRNQRYAKKHNNK GES TEEE
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRNHRHTSTKGMDPKFLRNQRYAKKHNNKSGESATEEE

XP_038875270.1 60S ribosomal protein L29-1 [Benincasa hispida]1.0e-2193.44Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRNHRHTSTKGMDPKFLRNQRYAKKHNNKSGESATEEE
        MAKSKNHTAHNQSRKAH+NGIKKPR HRHTSTKGMDPKFLRNQRYAKKHNNKSGE+A+EEE
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRNHRHTSTKGMDPKFLRNQRYAKKHNNKSGESATEEE

XP_038875325.1 60S ribosomal protein L29-1-like [Benincasa hispida]1.0e-2193.44Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRNHRHTSTKGMDPKFLRNQRYAKKHNNKSGESATEEE
        MAKSKNHTAHNQSRKAH+NGIKKPR HRHTSTKGMDPKFLRNQRYAKKHNNKSGE+A+EEE
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRNHRHTSTKGMDPKFLRNQRYAKKHNNKSGESATEEE

TrEMBL top hitse value%identityAlignment
A0A6J1EUF7 60S ribosomal protein L296.4e-2295Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRNHRHTSTKGMDPKFLRNQRYAKKHNNKSGESATEE
        MAKSKNHTAHNQSRKAHRNGIKKPR HRHTSTKGMDPKFLRNQRYAKKHNNKSGE+A+EE
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRNHRHTSTKGMDPKFLRNQRYAKKHNNKSGESATEE

A0A6J1H4N3 60S ribosomal protein L296.4e-2293.44Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRNHRHTSTKGMDPKFLRNQRYAKKHNNKSGESATEEE
        MAKSKNHTAHNQSRKAHRNGIKKPR HRHTSTKGMDPKFLRNQRYAKKHNNKSGE+ +EEE
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRNHRHTSTKGMDPKFLRNQRYAKKHNNKSGESATEEE

A0A6J1KET9 60S ribosomal protein L299.9e-2396.72Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRNHRHTSTKGMDPKFLRNQRYAKKHNNKSGESATEEE
        MAKSKNHTAHNQSRKAHRNGIKKPR HRHTSTKGMDPKFLRNQRYAKKHNNKSGES TEEE
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRNHRHTSTKGMDPKFLRNQRYAKKHNNKSGESATEEE

A0A6J1KHA4 60S ribosomal protein L292.2e-2295.08Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRNHRHTSTKGMDPKFLRNQRYAKKHNNKSGESATEEE
        MAKSKNHTAHNQSRKAHRNGIKKPR HRHTSTKGMDPKFLRNQRYAKKHNNKSGE+A+EEE
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRNHRHTSTKGMDPKFLRNQRYAKKHNNKSGESATEEE

A0A6J1L4P4 60S ribosomal protein L296.4e-2293.44Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRNHRHTSTKGMDPKFLRNQRYAKKHNNKSGESATEEE
        MAKSKNHTAHNQSRKAHRNGIKKPR HRHTSTKGMDPKFLRNQRYAKKHNNKSGE+ +EEE
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRNHRHTSTKGMDPKFLRNQRYAKKHNNKSGESATEEE

SwissProt top hitse value%identityAlignment
P47914 60S ribosomal protein L297.3e-1578.85Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRNHRHTSTKGMDPKFLRNQRYAKKHNNK
        MAKSKNHT HNQSRK HRNGIKKPR+ R+ S KG+DPKFLRN R+AKKHN K
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRNHRHTSTKGMDPKFLRNQRYAKKHNNK

Q58DW3 60S ribosomal protein L297.3e-1578.85Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRNHRHTSTKGMDPKFLRNQRYAKKHNNK
        MAKSKNHT HNQSRK HRNGIKKPR+ R+ S KG+DPKFLRN R+AKKHN K
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRNHRHTSTKGMDPKFLRNQRYAKKHNNK

Q84WM0 60S ribosomal protein L29-22.0e-2083.61Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRNHRHTSTKGMDPKFLRNQRYAKKHNNKSGESATEEE
        MAKSKNHTAHNQS KAH+NGIKKPR HRHT T+GMDPKFLRNQRYA+KHN KSGE+A  EE
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRNHRHTSTKGMDPKFLRNQRYAKKHNNKSGESATEEE

Q8HXB8 60S ribosomal protein L297.3e-1578.85Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRNHRHTSTKGMDPKFLRNQRYAKKHNNK
        MAKSKNHT HNQSRK HRNGIKKPR+ R+ S KG+DPKFLRN R+AKKHN K
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRNHRHTSTKGMDPKFLRNQRYAKKHNNK

Q9M7X7 60S ribosomal protein L29-11.5e-2081.97Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRNHRHTSTKGMDPKFLRNQRYAKKHNNKSGESATEEE
        MAKSKNHTAHNQS KAH+NGIKKPR HRHT T+GMDPKFLRNQRYA+KHN K+GE+A+ EE
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRNHRHTSTKGMDPKFLRNQRYAKKHNNKSGESATEEE

Arabidopsis top hitse value%identityAlignment
AT3G06680.1 Ribosomal L29e protein family1.4e-2183.61Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRNHRHTSTKGMDPKFLRNQRYAKKHNNKSGESATEEE
        MAKSKNHTAHNQS KAH+NGIKKPR HRHT T+GMDPKFLRNQRYA+KHN KSGE+A  EE
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRNHRHTSTKGMDPKFLRNQRYAKKHNNKSGESATEEE

AT3G06680.2 Ribosomal L29e protein family1.4e-2183.61Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRNHRHTSTKGMDPKFLRNQRYAKKHNNKSGESATEEE
        MAKSKNHTAHNQS KAH+NGIKKPR HRHT T+GMDPKFLRNQRYA+KHN KSGE+A  EE
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRNHRHTSTKGMDPKFLRNQRYAKKHNNKSGESATEEE

AT3G06700.1 Ribosomal L29e protein family1.1e-2181.97Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRNHRHTSTKGMDPKFLRNQRYAKKHNNKSGESATEEE
        MAKSKNHTAHNQS KAH+NGIKKPR HRHT T+GMDPKFLRNQRYA+KHN K+GE+A+ EE
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRNHRHTSTKGMDPKFLRNQRYAKKHNNKSGESATEEE

AT3G06700.2 Ribosomal L29e protein family1.1e-2181.97Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRNHRHTSTKGMDPKFLRNQRYAKKHNNKSGESATEEE
        MAKSKNHTAHNQS KAH+NGIKKPR HRHT T+GMDPKFLRNQRYA+KHN K+GE+A+ EE
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRNHRHTSTKGMDPKFLRNQRYAKKHNNKSGESATEEE

AT3G06700.3 Ribosomal L29e protein family1.1e-2181.97Show/hide
Query:  MAKSKNHTAHNQSRKAHRNGIKKPRNHRHTSTKGMDPKFLRNQRYAKKHNNKSGESATEEE
        MAKSKNHTAHNQS KAH+NGIKKPR HRHT T+GMDPKFLRNQRYA+KHN K+GE+A+ EE
Subjt:  MAKSKNHTAHNQSRKAHRNGIKKPRNHRHTSTKGMDPKFLRNQRYAKKHNNKSGESATEEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAAATCGAAGAATCACACAGCGCACAATCAATCCCGCAAAGCCCATAGGAATGGCATCAAGAAACCAAGGAACCACCGCCACACTTCCACTAAAGGAATGGATCC
GAAGTTTCTTAGGAACCAGAGGTATGCGAAGAAACATAACAACAAGAGTGGGGAATCCGCGACTGAGGAAGAGTAA
mRNA sequenceShow/hide mRNA sequence
CTTTCTCAACGAAGATCGTTGAATCGTTAATTTTTCTGAATTTCTTGTTCTCTGTTCTTTGTGATTCAGAAATGGCGAAATCGAAGAATCACACAGCGCACAATCAATCC
CGCAAAGCCCATAGGAATGGCATCAAGAAACCAAGGAACCACCGCCACACTTCCACTAAAGGAATGGATCCGAAGTTTCTTAGGAACCAGAGGTATGCGAAGAAACATAA
CAACAAGAGTGGGGAATCCGCGACTGAGGAAGAGTAAAGTAGAATTTCATGAATTGATTAATTTATGGTTTTTATGATATATGTTTGATTTTCTAATCAACACATTGTTT
TCTCTGTAGTAGTTTTGTAATTTTGACTTTGTTGTAGTGAGTTTCATTTCAATGTTGAAAGCGTTAGATTCTGAATTCTTGTTACGATAATACATTATTGATTTGCAATT
TTGGGGTTTTAGCTATTGGTTATATCTTCTAATATAATCATTTCTCTC
Protein sequenceShow/hide protein sequence
MAKSKNHTAHNQSRKAHRNGIKKPRNHRHTSTKGMDPKFLRNQRYAKKHNNKSGESATEEE