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Sed0020517 (gene) of Chayote v1 genome

Gene IDSed0020517
OrganismSechium edule (Chayote v1)
DescriptionSAM domain-containing protein
Genome locationLG06:44751071..44752519
RNA-Seq ExpressionSed0020517
SyntenySed0020517
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR001660 - Sterile alpha motif domain
IPR013761 - Sterile alpha motif/pointed domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606819.1 hypothetical protein SDJN03_00161, partial [Cucurbita argyrosperma subsp. sororia]2.5e-4257.45Show/hide
Query:  MDWISWLSSSGLHPRVAYEYGLAFSHNELEHEDILYFNHEFLLSLGISIAKHRLQILKLARSDAAALRRPPLSRRFRLALALAKRRLQDLIRNLTRRPPA
        MDW SWLS + L P + YEYGLA SHNELE EDI+YFNHEFL S+GISIAKHRL+ILKLAR D A   RP    R  LA+   KR    LIRN +     
Subjt:  MDWISWLSSSGLHPRVAYEYGLAFSHNELEHEDILYFNHEFLLSLGISIAKHRLQILKLARSDAAALRRPPLSRRFRLALALAKRRLQDLIRNLTRRPPA

Query:  LDG-ATKALILLP----------RSKKFAPAKRHGTLLITNGSPAPPGGGLWPRIESFSGPIVCDFRREE-KEEKGDCYWGNEVEEIR
         DG  +KAL+++P          R+KK   AK+ G  L+TNGSPAP   G+WPRIESFSGP+V D RR+E KEE+ D YW N VEEIR
Subjt:  LDG-ATKALILLP----------RSKKFAPAKRHGTLLITNGSPAPPGGGLWPRIESFSGPIVCDFRREE-KEEKGDCYWGNEVEEIR

XP_022948497.1 uncharacterized protein LOC111452156 [Cucurbita moschata]2.7e-4156.91Show/hide
Query:  MDWISWLSSSGLHPRVAYEYGLAFSHNELEHEDILYFNHEFLLSLGISIAKHRLQILKLARSDAAALRRPPLSRRFRLALALAKRRLQDLIRNLTRRPPA
        MDW SWLS + L P + YEYGLA SHNELE EDI+YFNHEFL S+GISIAKHRL+ILKLAR D A   RP    R  LA+   KR    LIRN +     
Subjt:  MDWISWLSSSGLHPRVAYEYGLAFSHNELEHEDILYFNHEFLLSLGISIAKHRLQILKLARSDAAALRRPPLSRRFRLALALAKRRLQDLIRNLTRRPPA

Query:  LDG-ATKALILLP----------RSKKFAPAKRHGTLLITNGSPAPPGGGLWPRIESFSGPIVCDFRREE-KEEKGDCYWGNEVEEIR
         DG  +KAL+++P          R+KK   AK+ G  L+TNGSPAP   G+WPRIESFSGP+V D RR+E KEE+ D  W N VEEIR
Subjt:  LDG-ATKALILLP----------RSKKFAPAKRHGTLLITNGSPAPPGGGLWPRIESFSGPIVCDFRREE-KEEKGDCYWGNEVEEIR

XP_022998747.1 uncharacterized protein LOC111493318 [Cucurbita maxima]3.2e-4257.14Show/hide
Query:  MDWISWLSSSGLHPRVAYEYGLAFSHNELEHEDILYFNHEFLLSLGISIAKHRLQILKLARSDAAALRRPPLSRRFRLALALAKRRLQDLIRNLTRRPPA
        MDW SWLS + L P + YEYGLA SHNELE EDI+YFNHEFL S+GISIAKHRL+ILKLAR D A   RP    R  LA+   KR    LIRN +     
Subjt:  MDWISWLSSSGLHPRVAYEYGLAFSHNELEHEDILYFNHEFLLSLGISIAKHRLQILKLARSDAAALRRPPLSRRFRLALALAKRRLQDLIRNLTRRPPA

Query:  LDG-ATKALILLP----------RSKKFAPAKRHGTLLITNGSPAPPGGGLWPRIESFSGPIVCDFRREEK--EEKGDCYWGNEVEEIR
         DG  +KAL+++P          R+KK   AK+ G  L+TNGSPAP   G+WPRIESFSGP+V D RR+EK  EE+ D YW N VEEIR
Subjt:  LDG-ATKALILLP----------RSKKFAPAKRHGTLLITNGSPAPPGGGLWPRIESFSGPIVCDFRREEK--EEKGDCYWGNEVEEIR

XP_023525324.1 uncharacterized protein LOC111788960 [Cucurbita pepo subsp. pepo]2.5e-4257.45Show/hide
Query:  MDWISWLSSSGLHPRVAYEYGLAFSHNELEHEDILYFNHEFLLSLGISIAKHRLQILKLARSDAAALRRPPLSRRFRLALALAKRRLQDLIRNLTRRPPA
        MDW SWLS + L P + YEYGLA SHNELE EDI+YFNHEFL S+GISIAKHRL+ILKLAR D A   RP    R  LA+   KR    LIRN +     
Subjt:  MDWISWLSSSGLHPRVAYEYGLAFSHNELEHEDILYFNHEFLLSLGISIAKHRLQILKLARSDAAALRRPPLSRRFRLALALAKRRLQDLIRNLTRRPPA

Query:  LDG-ATKALILLP----------RSKKFAPAKRHGTLLITNGSPAPPGGGLWPRIESFSGPIVCDFRREE-KEEKGDCYWGNEVEEIR
         DG  +KAL+++P          R+KK   AK+ G  L+TNGSPAP   G+WPRIESFSGP+V D RR+E KEE+ D YW N VEEIR
Subjt:  LDG-ATKALILLP----------RSKKFAPAKRHGTLLITNGSPAPPGGGLWPRIESFSGPIVCDFRREE-KEEKGDCYWGNEVEEIR

XP_038900622.1 uncharacterized protein LOC120087790 [Benincasa hispida]3.3e-3954.3Show/hide
Query:  MDWISWLSSSGLHPRVAYEYGLAFSHNELEHEDILYFNHEFLLSLGISIAKHRLQILKLARSDAAALRRPPLSRRFRLALALAKRRLQDLIRNLTRRPPA
        MDW SWLS + LHP + YEYGLA ++NELEHEDILYFNHEFL S+GISIAKHRL+ILKLAR D A   RP    R  LAL   KRR  +LIRN T     
Subjt:  MDWISWLSSSGLHPRVAYEYGLAFSHNELEHEDILYFNHEFLLSLGISIAKHRLQILKLARSDAAALRRPPLSRRFRLALALAKRRLQDLIRNLTRRPPA

Query:  LDGATKALILLP----------RSKKFAPAKRHGTLLITNGSPAPPGGGLWPRIESFSGPIVCDFRREEKEEKGDCYWGNEVEEIR
            +KAL+L+P          R+K F+  K  G  L+TNGSP P  G +WPRI++FSGPI+ DF  EEK+++ +    + VEEIR
Subjt:  LDGATKALILLP----------RSKKFAPAKRHGTLLITNGSPAPPGGGLWPRIESFSGPIVCDFRREEKEEKGDCYWGNEVEEIR

TrEMBL top hitse value%identityAlignment
A0A6J1DIZ2 uncharacterized protein LOC1110209216.8e-3853.76Show/hide
Query:  MDWISWLSSSGLHPRVAYEYGLAFSHNELEHEDILYFNHEFLLSLGISIAKHRLQILKLARSDAAALRRPPLSRRFRLALALAKRRLQDLIRNLTRRPPA
        MDW SWLS + L P + YEYGLAF+HNELE +DI+YFNHEFL S+GISIAKHRL+ILKLAR + A   RP    R  LA+   KR   +LIRN +     
Subjt:  MDWISWLSSSGLHPRVAYEYGLAFSHNELEHEDILYFNHEFLLSLGISIAKHRLQILKLARSDAAALRRPPLSRRFRLALALAKRRLQDLIRNLTRRPPA

Query:  LDGATKALILLP----------RSKKFAPAKRHGTLLITNGSPAPPGGGLWPRIESFSGPIVCDFRREEKEEKGDCYWGNEVEEIR
         D  +KAL+++P          R+KK   AK+ G+LL+TNGS   P     PR +SFSGPIV + RREE+E   D YWGN VEEIR
Subjt:  LDGATKALILLP----------RSKKFAPAKRHGTLLITNGSPAPPGGGLWPRIESFSGPIVCDFRREEKEEKGDCYWGNEVEEIR

A0A6J1G9F1 uncharacterized protein LOC1114521561.3e-4156.91Show/hide
Query:  MDWISWLSSSGLHPRVAYEYGLAFSHNELEHEDILYFNHEFLLSLGISIAKHRLQILKLARSDAAALRRPPLSRRFRLALALAKRRLQDLIRNLTRRPPA
        MDW SWLS + L P + YEYGLA SHNELE EDI+YFNHEFL S+GISIAKHRL+ILKLAR D A   RP    R  LA+   KR    LIRN +     
Subjt:  MDWISWLSSSGLHPRVAYEYGLAFSHNELEHEDILYFNHEFLLSLGISIAKHRLQILKLARSDAAALRRPPLSRRFRLALALAKRRLQDLIRNLTRRPPA

Query:  LDG-ATKALILLP----------RSKKFAPAKRHGTLLITNGSPAPPGGGLWPRIESFSGPIVCDFRREE-KEEKGDCYWGNEVEEIR
         DG  +KAL+++P          R+KK   AK+ G  L+TNGSPAP   G+WPRIESFSGP+V D RR+E KEE+ D  W N VEEIR
Subjt:  LDG-ATKALILLP----------RSKKFAPAKRHGTLLITNGSPAPPGGGLWPRIESFSGPIVCDFRREE-KEEKGDCYWGNEVEEIR

A0A6J1K8U0 uncharacterized protein LOC1114933181.6e-4257.14Show/hide
Query:  MDWISWLSSSGLHPRVAYEYGLAFSHNELEHEDILYFNHEFLLSLGISIAKHRLQILKLARSDAAALRRPPLSRRFRLALALAKRRLQDLIRNLTRRPPA
        MDW SWLS + L P + YEYGLA SHNELE EDI+YFNHEFL S+GISIAKHRL+ILKLAR D A   RP    R  LA+   KR    LIRN +     
Subjt:  MDWISWLSSSGLHPRVAYEYGLAFSHNELEHEDILYFNHEFLLSLGISIAKHRLQILKLARSDAAALRRPPLSRRFRLALALAKRRLQDLIRNLTRRPPA

Query:  LDG-ATKALILLP----------RSKKFAPAKRHGTLLITNGSPAPPGGGLWPRIESFSGPIVCDFRREEK--EEKGDCYWGNEVEEIR
         DG  +KAL+++P          R+KK   AK+ G  L+TNGSPAP   G+WPRIESFSGP+V D RR+EK  EE+ D YW N VEEIR
Subjt:  LDG-ATKALILLP----------RSKKFAPAKRHGTLLITNGSPAPPGGGLWPRIESFSGPIVCDFRREEK--EEKGDCYWGNEVEEIR

A0A6P3Z979 uncharacterized protein LOC1074079345.4e-3551.08Show/hide
Query:  MDWISWLSSSGLHPRVAYEYGLAFSHNELEHEDILYFNHEFLLSLGISIAKHRLQILKLARSDAAALRRPPLSRRFRLALALAKRRLQDLIRNLTRR---
        MDW SWLS +GL P + YEYGLAF+HNELE EDI+YFNHEFL S+GISIAKHRL+ILKLAR +     RP    R  +AL   KR L   +  L  R   
Subjt:  MDWISWLSSSGLHPRVAYEYGLAFSHNELEHEDILYFNHEFLLSLGISIAKHRLQILKLARSDAAALRRPPLSRRFRLALALAKRRLQDLIRNLTRR---

Query:  -----PPALDGATKALILLPRSKKFAPAKRHGTLLITNGSPAPPGGGLWPRIESFSGPIVCDFRREEKEEKGD--CYWGNEVEEIR
             P    G      +L R+KK   A +   LL+TNGSP    G   PR+ESFS P+V D  +EEK E+GD   YW   VEEIR
Subjt:  -----PPALDGATKALILLPRSKKFAPAKRHGTLLITNGSPAPPGGGLWPRIESFSGPIVCDFRREEKEEKGD--CYWGNEVEEIR

W9RBY4 SAM domain-containing protein1.4e-3551.02Show/hide
Query:  MDWISWLSSSGLHPRVAYEYGLAFSHNELEHEDILYFNHEFLLSLGISIAKHRLQILKLARSDAAALRRPPL-SRRFRLALALAKRRLQDLIRNLTRRPP
        MDW SWLS +GL P + YEYGLAF+HNELE EDI+YFNHEFL S+GISIAKHRL+ILKLAR +  +  R P    R  +A+   KR L   IR L RR  
Subjt:  MDWISWLSSSGLHPRVAYEYGLAFSHNELEHEDILYFNHEFLLSLGISIAKHRLQILKLARSDAAALRRPPL-SRRFRLALALAKRRLQDLIRNLTRRPP

Query:  ALDGATKALILLPRSKKF------APAKRH--------GTLLITNGSPAPPGGGLWPRIESFSGPIVCDFRREEKEE-----KGDCYWGNEVEEIR
          D  + AL+++ R   +      A  KR+        G LL+TNGSP    GG  PRIESFS P+V D R+EEK E     + D YW   VEEIR
Subjt:  ALDGATKALILLPRSKKF------APAKRH--------GTLLITNGSPAPPGGGLWPRIESFSGPIVCDFRREEKEE-----KGDCYWGNEVEEIR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G15760.1 Sterile alpha motif (SAM) domain-containing protein2.6e-2641.75Show/hide
Query:  WISWLSSSGLHPRVAYEYGLAFSHNELEHEDILYFNHEFLLSLGISIAKHRLQILKLARSDAAALRRPPLSRR--FRLALALAKRR--LQDLIRNLTRRP
        W SWLS + L P + +EYGL+FS NELEHEDI YF+HEFL S+GISIAKHRL+ILKLAR D      PPL+ R   R+  A+ K R  L D +R   RR 
Subjt:  WISWLSSSGLHPRVAYEYGLAFSHNELEHEDILYFNHEFLLSLGISIAKHRLQILKLARSDAAALRRPPLSRR--FRLALALAKRR--LQDLIRNLTRRP

Query:  PALDGATKALILLPR-----------------SKKFAPAKRHG------TLLITNGSPAPPGGGLWPRIESFSGPIVCDFR-REEKEEKGDCYW
             +++AL+L+P+                  +   P+  +G       LL+TNG+P         RI+SFS P+V D+  ++EK    D Y+
Subjt:  PALDGATKALILLPR-----------------SKKFAPAKRHG------TLLITNGSPAPPGGGLWPRIESFSGPIVCDFR-REEKEEKGDCYW

AT1G80520.1 Sterile alpha motif (SAM) domain-containing protein2.6e-2641.95Show/hide
Query:  MDWISWLSSSGLHPRVAYEYGLAFSHNELEHEDILYFNHEFLLSLGISIAKHRLQILKLARSDAAALRRP-PLSRR--FRLALALAK--RRLQDLIRNLT
        MDW SWLS + L   + YEYGL+FS+NELE+EDI YFNHEFL S+GISIAKHRL+ILKLAR D    R+P PL+ R  FR+ +A+ K  +   + +R   
Subjt:  MDWISWLSSSGLHPRVAYEYGLAFSHNELEHEDILYFNHEFLLSLGISIAKHRLQILKLARSDAAALRRP-PLSRR--FRLALALAK--RRLQDLIRNLT

Query:  RRPPALDGATKALILLPRS---------------KKFAPAKRHGT----LLITNGSPAPPGGGLWPRIESFSGPIVCDFRREEKEEKGDCYWGN-EVEEI
        RR    + +++AL+++ RS               +   P+  +G     LL+TNG+P         R++SFS P V         E  D +WGN +VEE 
Subjt:  RRPPALDGATKALILLPRS---------------KKFAPAKRHGT----LLITNGSPAPPGGGLWPRIESFSGPIVCDFRREEKEEKGDCYWGN-EVEEI

Query:  RKFVS
         K+ S
Subjt:  RKFVS

AT2G12462.1 BEST Arabidopsis thaliana protein match is: Sterile alpha motif (SAM) domain-containing protein (TAIR:AT1G15760.1)6.1e-1536.03Show/hide
Query:  MDWISWLSSSGLHPRVAYEYGLAFSHNELEHEDILYFNHEFLLSLGISIAKHRLQILKLARSDAAAL----RRPPLSRRFRLALALAKRRLQDLIRNLTR
        MDW SWLS + L P ++YEYGL F+  +L+ EDI  FNH FL  LG+++ KHR++ILKL++ +  AL     RP  ++   + +   K      + N   
Subjt:  MDWISWLSSSGLHPRVAYEYGLAFSHNELEHEDILYFNHEFLLSLGISIAKHRLQILKLARSDAAAL----RRPPLSRRFRLALALAKRRLQDLIRNLTR

Query:  RPPALDGATKALILLPRSKKFAPAKRHGTLLITNGS
        +  +L G T  +  L   +   PA R G  L  N +
Subjt:  RPPALDGATKALILLPRSKKFAPAKRHGTLLITNGS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTGGATCTCATGGCTTTCAAGCTCAGGTCTCCATCCGAGAGTGGCGTACGAGTACGGCCTCGCCTTCTCCCACAACGAGCTCGAACACGAAGACATCCTCTACTT
CAACCACGAATTCCTCCTCAGCCTCGGAATCTCCATCGCCAAACACCGCCTCCAGATCCTCAAACTCGCCCGCTCCGACGCCGCCGCCCTCCGCCGCCCCCCCCTCTCCC
GCCGCTTCCGCCTCGCCCTCGCCCTCGCCAAGCGCCGCCTCCAGGATCTCATCCGGAACCTCACTCGCCGCCCCCCCGCCCTCGACGGCGCCACCAAAGCCCTAATCCTC
CTCCCCAGATCTAAGAAATTCGCCCCCGCCAAACGCCACGGGACCCTTCTCATTACCAACGGAAGCCCGGCGCCGCCCGGCGGTGGTCTCTGGCCGAGGATCGAGAGCTT
TTCCGGCCCGATTGTGTGCGATTTCCGGCGAGAGGAGAAGGAGGAGAAAGGGGATTGTTATTGGGGAAATGAAGTTGAGGAAATTAGAAAATTTGTTTCTTACTGTGGAA
GAAAGTTTGGTGTGCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTGGATCTCATGGCTTTCAAGCTCAGGTCTCCATCCGAGAGTGGCGTACGAGTACGGCCTCGCCTTCTCCCACAACGAGCTCGAACACGAAGACATCCTCTACTT
CAACCACGAATTCCTCCTCAGCCTCGGAATCTCCATCGCCAAACACCGCCTCCAGATCCTCAAACTCGCCCGCTCCGACGCCGCCGCCCTCCGCCGCCCCCCCCTCTCCC
GCCGCTTCCGCCTCGCCCTCGCCCTCGCCAAGCGCCGCCTCCAGGATCTCATCCGGAACCTCACTCGCCGCCCCCCCGCCCTCGACGGCGCCACCAAAGCCCTAATCCTC
CTCCCCAGATCTAAGAAATTCGCCCCCGCCAAACGCCACGGGACCCTTCTCATTACCAACGGAAGCCCGGCGCCGCCCGGCGGTGGTCTCTGGCCGAGGATCGAGAGCTT
TTCCGGCCCGATTGTGTGCGATTTCCGGCGAGAGGAGAAGGAGGAGAAAGGGGATTGTTATTGGGGAAATGAAGTTGAGGAAATTAGAAAATTTGTTTCTTACTGTGGAA
GAAAGTTTGGTGTGCTTTGA
Protein sequenceShow/hide protein sequence
MDWISWLSSSGLHPRVAYEYGLAFSHNELEHEDILYFNHEFLLSLGISIAKHRLQILKLARSDAAALRRPPLSRRFRLALALAKRRLQDLIRNLTRRPPALDGATKALIL
LPRSKKFAPAKRHGTLLITNGSPAPPGGGLWPRIESFSGPIVCDFRREEKEEKGDCYWGNEVEEIRKFVSYCGRKFGVL