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Sed0020559 (gene) of Chayote v1 genome

Gene IDSed0020559
OrganismSechium edule (Chayote v1)
DescriptionProtein of unknown function (DUF1162)
Genome locationLG08:24844117..24849774
RNA-Seq ExpressionSed0020559
SyntenySed0020559
Gene Ontology termsNA
InterPro domainsIPR031646 - Vacuolar protein sorting-associated protein 13, second N-terminal domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038223.1 putative vacuolar protein sorting-associated protein 13A isoform X1 [Cucumis melo var. makuwa]8.3e-4685.59Show/hide
Query:  GWVRGSQVNKLLEIVGLDIYCSCQSTVDVEGCK-GGGTKVSPLEEKNDFILAPCDAVLSLMVNRSGKLDNSTPQYSVNAELSSLVFILNDAQLQQILNLW
        GW RGSQVNKL+EI+GL+IYCSCQS VDVEGCK   G KVS LEEK+DFILAPCDAVLSLMVNRSGKLDNSTPQYSV A+LSSLVF LND QLQQILNLW
Subjt:  GWVRGSQVNKLLEIVGLDIYCSCQSTVDVEGCK-GGGTKVSPLEEKNDFILAPCDAVLSLMVNRSGKLDNSTPQYSVNAELSSLVFILNDAQLQQILNLW

Query:  DYISICRLRDK
        DY+SICRLRDK
Subjt:  DYISICRLRDK
XP_008443663.1 PREDICTED: putative vacuolar protein sorting-associated protein 13A isoform X1 [Cucumis melo]8.3e-4685.59Show/hide
Query:  GWVRGSQVNKLLEIVGLDIYCSCQSTVDVEGCK-GGGTKVSPLEEKNDFILAPCDAVLSLMVNRSGKLDNSTPQYSVNAELSSLVFILNDAQLQQILNLW
        GW RGSQVNKL+EI+GL+IYCSCQS VDVEGCK   G KVS LEEK+DFILAPCDAVLSLMVNRSGKLDNSTPQYSV A+LSSLVF LND QLQQILNLW
Subjt:  GWVRGSQVNKLLEIVGLDIYCSCQSTVDVEGCK-GGGTKVSPLEEKNDFILAPCDAVLSLMVNRSGKLDNSTPQYSVNAELSSLVFILNDAQLQQILNLW

Query:  DYISICRLRDK
        DY+SICRLRDK
Subjt:  DYISICRLRDK
XP_011660209.1 uncharacterized protein LOC101204937 isoform X1 [Cucumis sativus]3.7e-4685.59Show/hide
Query:  GWVRGSQVNKLLEIVGLDIYCSCQSTVDVEGC-KGGGTKVSPLEEKNDFILAPCDAVLSLMVNRSGKLDNSTPQYSVNAELSSLVFILNDAQLQQILNLW
        GW RGSQVNKL+EI+GL+IYCSCQ+TVDVEGC +  GTKVS LEEK+DFILAPCDAVLSLMVNRSGKLDNSTPQYSV A+LSSLVF LND QLQQILNLW
Subjt:  GWVRGSQVNKLLEIVGLDIYCSCQSTVDVEGC-KGGGTKVSPLEEKNDFILAPCDAVLSLMVNRSGKLDNSTPQYSVNAELSSLVFILNDAQLQQILNLW

Query:  DYISICRLRDK
        DY+SICRLRDK
Subjt:  DYISICRLRDK
XP_031736163.1 uncharacterized protein LOC101204937 isoform X2 [Cucumis sativus]3.7e-4685.59Show/hide
Query:  GWVRGSQVNKLLEIVGLDIYCSCQSTVDVEGC-KGGGTKVSPLEEKNDFILAPCDAVLSLMVNRSGKLDNSTPQYSVNAELSSLVFILNDAQLQQILNLW
        GW RGSQVNKL+EI+GL+IYCSCQ+TVDVEGC +  GTKVS LEEK+DFILAPCDAVLSLMVNRSGKLDNSTPQYSV A+LSSLVF LND QLQQILNLW
Subjt:  GWVRGSQVNKLLEIVGLDIYCSCQSTVDVEGC-KGGGTKVSPLEEKNDFILAPCDAVLSLMVNRSGKLDNSTPQYSVNAELSSLVFILNDAQLQQILNLW

Query:  DYISICRLRDK
        DY+SICRLRDK
Subjt:  DYISICRLRDK
XP_031736164.1 uncharacterized protein LOC101204937 isoform X3 [Cucumis sativus]3.7e-4685.59Show/hide
Query:  GWVRGSQVNKLLEIVGLDIYCSCQSTVDVEGC-KGGGTKVSPLEEKNDFILAPCDAVLSLMVNRSGKLDNSTPQYSVNAELSSLVFILNDAQLQQILNLW
        GW RGSQVNKL+EI+GL+IYCSCQ+TVDVEGC +  GTKVS LEEK+DFILAPCDAVLSLMVNRSGKLDNSTPQYSV A+LSSLVF LND QLQQILNLW
Subjt:  GWVRGSQVNKLLEIVGLDIYCSCQSTVDVEGC-KGGGTKVSPLEEKNDFILAPCDAVLSLMVNRSGKLDNSTPQYSVNAELSSLVFILNDAQLQQILNLW

Query:  DYISICRLRDK
        DY+SICRLRDK
Subjt:  DYISICRLRDK
TrEMBL top hitse value%identityAlignment
A0A1S3B8J3 putative vacuolar protein sorting-associated protein 13A isoform X14.0e-4685.59Show/hide
Query:  GWVRGSQVNKLLEIVGLDIYCSCQSTVDVEGCK-GGGTKVSPLEEKNDFILAPCDAVLSLMVNRSGKLDNSTPQYSVNAELSSLVFILNDAQLQQILNLW
        GW RGSQVNKL+EI+GL+IYCSCQS VDVEGCK   G KVS LEEK+DFILAPCDAVLSLMVNRSGKLDNSTPQYSV A+LSSLVF LND QLQQILNLW
Subjt:  GWVRGSQVNKLLEIVGLDIYCSCQSTVDVEGCK-GGGTKVSPLEEKNDFILAPCDAVLSLMVNRSGKLDNSTPQYSVNAELSSLVFILNDAQLQQILNLW

Query:  DYISICRLRDK
        DY+SICRLRDK
Subjt:  DYISICRLRDK
A0A1S4DUY4 uncharacterized protein LOC103487212 isoform X24.0e-4685.59Show/hide
Query:  GWVRGSQVNKLLEIVGLDIYCSCQSTVDVEGCK-GGGTKVSPLEEKNDFILAPCDAVLSLMVNRSGKLDNSTPQYSVNAELSSLVFILNDAQLQQILNLW
        GW RGSQVNKL+EI+GL+IYCSCQS VDVEGCK   G KVS LEEK+DFILAPCDAVLSLMVNRSGKLDNSTPQYSV A+LSSLVF LND QLQQILNLW
Subjt:  GWVRGSQVNKLLEIVGLDIYCSCQSTVDVEGCK-GGGTKVSPLEEKNDFILAPCDAVLSLMVNRSGKLDNSTPQYSVNAELSSLVFILNDAQLQQILNLW

Query:  DYISICRLRDK
        DY+SICRLRDK
Subjt:  DYISICRLRDK
A0A5A7T5L4 Putative vacuolar protein sorting-associated protein 13A isoform X14.0e-4685.59Show/hide
Query:  GWVRGSQVNKLLEIVGLDIYCSCQSTVDVEGCK-GGGTKVSPLEEKNDFILAPCDAVLSLMVNRSGKLDNSTPQYSVNAELSSLVFILNDAQLQQILNLW
        GW RGSQVNKL+EI+GL+IYCSCQS VDVEGCK   G KVS LEEK+DFILAPCDAVLSLMVNRSGKLDNSTPQYSV A+LSSLVF LND QLQQILNLW
Subjt:  GWVRGSQVNKLLEIVGLDIYCSCQSTVDVEGCK-GGGTKVSPLEEKNDFILAPCDAVLSLMVNRSGKLDNSTPQYSVNAELSSLVFILNDAQLQQILNLW

Query:  DYISICRLRDK
        DY+SICRLRDK
Subjt:  DYISICRLRDK
A0A6J1D861 uncharacterized protein LOC111018256 isoform X12.6e-4583.04Show/hide
Query:  GGWVRGSQVNKLLEIVGLDIYCSCQSTVDVEGCK-GGGTKVSPLEEKNDFILAPCDAVLSLMVNRSGKLDNSTPQYSVNAELSSLVFILNDAQLQQILNL
        GGWVRGSQVNK +EIVGL+IYCSCQS V VEGC+   GTKV+P EEK DFILAPCDAVLSL+VNRSGKLDNSTPQYSVNA+L+SLVF LND QLQQILNL
Subjt:  GGWVRGSQVNKLLEIVGLDIYCSCQSTVDVEGCK-GGGTKVSPLEEKNDFILAPCDAVLSLMVNRSGKLDNSTPQYSVNAELSSLVFILNDAQLQQILNL

Query:  WDYISICRLRDK
        WDY+ ICRLRDK
Subjt:  WDYISICRLRDK
A0A6J1D8L0 uncharacterized protein LOC111018256 isoform X22.6e-4583.04Show/hide
Query:  GGWVRGSQVNKLLEIVGLDIYCSCQSTVDVEGCK-GGGTKVSPLEEKNDFILAPCDAVLSLMVNRSGKLDNSTPQYSVNAELSSLVFILNDAQLQQILNL
        GGWVRGSQVNK +EIVGL+IYCSCQS V VEGC+   GTKV+P EEK DFILAPCDAVLSL+VNRSGKLDNSTPQYSVNA+L+SLVF LND QLQQILNL
Subjt:  GGWVRGSQVNKLLEIVGLDIYCSCQSTVDVEGCK-GGGTKVSPLEEKNDFILAPCDAVLSLMVNRSGKLDNSTPQYSVNAELSSLVFILNDAQLQQILNL

Query:  WDYISICRLRDK
        WDY+ ICRLRDK
Subjt:  WDYISICRLRDK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G24740.1 Protein of unknown function (DUF1162)1.3e-1539.1Show/hide
Query:  SIFTLVSCNFLAKSLAGGWVRGSQVNKLLEIVGLDIYCSC-QSTVDVEGCK---GGGTKVSPLEEKNDF--ILAPCDAVLSLMVNRSGKLDNSTPQYSVN
        S  T+   N +  S+  G VRG QVN L+E+ GL+IYC   +  +D        G         + N F  +L P    ++L+VNRSG+L +  PQYS++
Subjt:  SIFTLVSCNFLAKSLAGGWVRGSQVNKLLEIVGLDIYCSC-QSTVDVEGCK---GGGTKVSPLEEKNDF--ILAPCDAVLSLMVNRSGKLDNSTPQYSVN

Query:  AELSSLVFILNDAQLQQILNLWDYISICRLRDK
        AEL+ +V  LN+ QLQQIL L DY+   +LR++
Subjt:  AELSSLVFILNDAQLQQILNLWDYISICRLRDK
AT5G24740.2 Protein of unknown function (DUF1162)1.3e-1539.1Show/hide
Query:  SIFTLVSCNFLAKSLAGGWVRGSQVNKLLEIVGLDIYCSC-QSTVDVEGCK---GGGTKVSPLEEKNDF--ILAPCDAVLSLMVNRSGKLDNSTPQYSVN
        S  T+   N +  S+  G VRG QVN L+E+ GL+IYC   +  +D        G         + N F  +L P    ++L+VNRSG+L +  PQYS++
Subjt:  SIFTLVSCNFLAKSLAGGWVRGSQVNKLLEIVGLDIYCSC-QSTVDVEGCK---GGGTKVSPLEEKNDF--ILAPCDAVLSLMVNRSGKLDNSTPQYSVN

Query:  AELSSLVFILNDAQLQQILNLWDYISICRLRDK
        AEL+ +V  LN+ QLQQIL L DY+   +LR++
Subjt:  AELSSLVFILNDAQLQQILNLWDYISICRLRDK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCTCGATTTTCAAATCTTGTGAATCCAACCTTTTTCCCAATCGTTCTTCCATCGCTTCCATCTTCACATTAGTTTCTTGTAACTTTCTTGCCAAATCATTGGCAGG
AGGATGGGTGAGGGGAAGCCAAGTCAACAAACTTCTGGAGATTGTCGGCTTGGACATTTATTGTTCATGTCAAAGTACAGTGGATGTGGAGGGATGCAAAGGAGGGGGAA
CTAAAGTGAGCCCATTGGAAGAAAAAAATGACTTCATATTAGCTCCATGTGATGCAGTCTTGTCACTTATGGTTAACAGATCAGGAAAGCTCGATAATAGTACTCCACAA
TATTCTGTTAATGCCGAATTAAGTAGCCTGGTCTTCATTTTAAATGACGCTCAGCTGCAACAAATATTGAATTTGTGGGATTATATTTCCATATGCCGATTAAGAGATAA
GTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTCTCGATTTTCAAATCTTGTGAATCCAACCTTTTTCCCAATCGTTCTTCCATCGCTTCCATCTTCACATTAGTTTCTTGTAACTTTCTTGCCAAATCATTGGCAGG
AGGATGGGTGAGGGGAAGCCAAGTCAACAAACTTCTGGAGATTGTCGGCTTGGACATTTATTGTTCATGTCAAAGTACAGTGGATGTGGAGGGATGCAAAGGAGGGGGAA
CTAAAGTGAGCCCATTGGAAGAAAAAAATGACTTCATATTAGCTCCATGTGATGCAGTCTTGTCACTTATGGTTAACAGATCAGGAAAGCTCGATAATAGTACTCCACAA
TATTCTGTTAATGCCGAATTAAGTAGCCTGGTCTTCATTTTAAATGACGCTCAGCTGCAACAAATATTGAATTTGTGGGATTATATTTCCATATGCCGATTAAGAGATAA
GTAA
Protein sequenceShow/hide protein sequence
MLSIFKSCESNLFPNRSSIASIFTLVSCNFLAKSLAGGWVRGSQVNKLLEIVGLDIYCSCQSTVDVEGCKGGGTKVSPLEEKNDFILAPCDAVLSLMVNRSGKLDNSTPQ
YSVNAELSSLVFILNDAQLQQILNLWDYISICRLRDK