; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0020604 (gene) of Chayote v1 genome

Gene IDSed0020604
OrganismSechium edule (Chayote v1)
DescriptionThioredoxin-like protein YLS8
Genome locationLG04:39836908..39839292
RNA-Seq ExpressionSed0020604
SyntenySed0020604
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0005682 - U5 snRNP (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
InterPro domainsIPR004123 - Dim1 family
IPR036249 - Thioredoxin-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MBA0750948.1 hypothetical protein [Gossypium gossypioides]1.4e-6991.55Show/hide
Query:  MSHLLQHIHSGWAVDPSILDEEERLVVIRFGHAWDETCMQMDEVLASVAETIKNFAVIYLLDIKKVPDFNTMYELYDPFTVMFFFRNKHIMIDLGTGNNN
        MS+LL H+HSGWAVD +IL EEERLVVIRFGH WDETCMQMDEVLASVAETIKNFAVIYL+DI +VPDFNTMYELYDP TVMFFFRNKHIMIDLGTGNNN
Subjt:  MSHLLQHIHSGWAVDPSILDEEERLVVIRFGHAWDETCMQMDEVLASVAETIKNFAVIYLLDIKKVPDFNTMYELYDPFTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYHGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDIIETVY GARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYHGARKGRGLVIAPKDYSTKYRY

NP_196446.1 mRNA splicing factor, thioredoxin-like U5 snRNP [Arabidopsis thaliana]6.1e-7092.25Show/hide
Query:  MSHLLQHIHSGWAVDPSILDEEERLVVIRFGHAWDETCMQMDEVLASVAETIKNFAVIYLLDIKKVPDFNTMYELYDPFTVMFFFRNKHIMIDLGTGNNN
        MS+LL H+HSGWAVD SIL EEERLVVIRFGH WDETCMQMDEVLASVAETIKNFAVIYL+DI +VPDFNTMYELYDP TVMFFFRNKHIMIDLGTGNNN
Subjt:  MSHLLQHIHSGWAVDPSILDEEERLVVIRFGHAWDETCMQMDEVLASVAETIKNFAVIYLLDIKKVPDFNTMYELYDPFTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYHGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDIIETVY GARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYHGARKGRGLVIAPKDYSTKYRY

XP_004148041.1 thioredoxin-like protein YLS8 [Cucumis sativus]1.4e-6991.55Show/hide
Query:  MSHLLQHIHSGWAVDPSILDEEERLVVIRFGHAWDETCMQMDEVLASVAETIKNFAVIYLLDIKKVPDFNTMYELYDPFTVMFFFRNKHIMIDLGTGNNN
        MS+LL H+HSGWAVD +IL EEERLVVIRFGH WDETCMQMDEVLASVAETIKNFAVIYL+DI +VPDFNTMYELYDP TVMFFFRNKHIMIDLGTGNNN
Subjt:  MSHLLQHIHSGWAVDPSILDEEERLVVIRFGHAWDETCMQMDEVLASVAETIKNFAVIYLLDIKKVPDFNTMYELYDPFTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYHGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDIIETVY GARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYHGARKGRGLVIAPKDYSTKYRY

XP_030501975.1 thioredoxin-like protein YLS8 [Cannabis sativa]1.0e-6990.85Show/hide
Query:  MSHLLQHIHSGWAVDPSILDEEERLVVIRFGHAWDETCMQMDEVLASVAETIKNFAVIYLLDIKKVPDFNTMYELYDPFTVMFFFRNKHIMIDLGTGNNN
        MS+LL H+HSGWAVD SIL EEERLV+IRFGH WDETCMQMDEVLASVAETIKNFAVIYL+DI +VPDFNTMYELYDP TVMFFFRNKHIMIDLGTGNNN
Subjt:  MSHLLQHIHSGWAVDPSILDEEERLVVIRFGHAWDETCMQMDEVLASVAETIKNFAVIYLLDIKKVPDFNTMYELYDPFTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYHGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDI+ETVY GARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYHGARKGRGLVIAPKDYSTKYRY

XP_040967487.1 thioredoxin-like protein YLS8 [Gossypium hirsutum]1.4e-6991.55Show/hide
Query:  MSHLLQHIHSGWAVDPSILDEEERLVVIRFGHAWDETCMQMDEVLASVAETIKNFAVIYLLDIKKVPDFNTMYELYDPFTVMFFFRNKHIMIDLGTGNNN
        MS+LL H+HSGWAVD +IL EEERLVVIRFGH WDETCMQMDEVLASVAETIKNFAVIYL+DI +VPDFNTMYELYDP TVMFFFRNKHIMIDLGTGNNN
Subjt:  MSHLLQHIHSGWAVDPSILDEEERLVVIRFGHAWDETCMQMDEVLASVAETIKNFAVIYLLDIKKVPDFNTMYELYDPFTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYHGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDIIETVY GARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYHGARKGRGLVIAPKDYSTKYRY

TrEMBL top hitse value%identityAlignment
A0A178UL96 (thale cress) hypothetical protein3.0e-7092.25Show/hide
Query:  MSHLLQHIHSGWAVDPSILDEEERLVVIRFGHAWDETCMQMDEVLASVAETIKNFAVIYLLDIKKVPDFNTMYELYDPFTVMFFFRNKHIMIDLGTGNNN
        MS+LL H+HSGWAVD SIL EEERLVVIRFGH WDETCMQMDEVLASVAETIKNFAVIYL+DI +VPDFNTMYELYDP TVMFFFRNKHIMIDLGTGNNN
Subjt:  MSHLLQHIHSGWAVDPSILDEEERLVVIRFGHAWDETCMQMDEVLASVAETIKNFAVIYLLDIKKVPDFNTMYELYDPFTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYHGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDIIETVY GARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYHGARKGRGLVIAPKDYSTKYRY

A0A7J6EY50 Uncharacterized protein5.1e-7090.85Show/hide
Query:  MSHLLQHIHSGWAVDPSILDEEERLVVIRFGHAWDETCMQMDEVLASVAETIKNFAVIYLLDIKKVPDFNTMYELYDPFTVMFFFRNKHIMIDLGTGNNN
        MS+LL H+HSGWAVD SIL EEERLV+IRFGH WDETCMQMDEVLASVAETIKNFAVIYL+DI +VPDFNTMYELYDP TVMFFFRNKHIMIDLGTGNNN
Subjt:  MSHLLQHIHSGWAVDPSILDEEERLVVIRFGHAWDETCMQMDEVLASVAETIKNFAVIYLLDIKKVPDFNTMYELYDPFTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYHGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDI+ETVY GARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYHGARKGRGLVIAPKDYSTKYRY

A0A803PN35 Uncharacterized protein5.1e-7090.85Show/hide
Query:  MSHLLQHIHSGWAVDPSILDEEERLVVIRFGHAWDETCMQMDEVLASVAETIKNFAVIYLLDIKKVPDFNTMYELYDPFTVMFFFRNKHIMIDLGTGNNN
        MS+LL H+HSGWAVD SIL EEERLV+IRFGH WDETCMQMDEVLASVAETIKNFAVIYL+DI +VPDFNTMYELYDP TVMFFFRNKHIMIDLGTGNNN
Subjt:  MSHLLQHIHSGWAVDPSILDEEERLVVIRFGHAWDETCMQMDEVLASVAETIKNFAVIYLLDIKKVPDFNTMYELYDPFTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYHGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDI+ETVY GARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYHGARKGRGLVIAPKDYSTKYRY

A0A803PN36 Uncharacterized protein5.1e-7090.85Show/hide
Query:  MSHLLQHIHSGWAVDPSILDEEERLVVIRFGHAWDETCMQMDEVLASVAETIKNFAVIYLLDIKKVPDFNTMYELYDPFTVMFFFRNKHIMIDLGTGNNN
        MS+LL H+HSGWAVD SIL EEERLV+IRFGH WDETCMQMDEVLASVAETIKNFAVIYL+DI +VPDFNTMYELYDP TVMFFFRNKHIMIDLGTGNNN
Subjt:  MSHLLQHIHSGWAVDPSILDEEERLVVIRFGHAWDETCMQMDEVLASVAETIKNFAVIYLLDIKKVPDFNTMYELYDPFTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYHGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDI+ETVY GARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYHGARKGRGLVIAPKDYSTKYRY

A0A803PN37 Uncharacterized protein5.1e-7090.85Show/hide
Query:  MSHLLQHIHSGWAVDPSILDEEERLVVIRFGHAWDETCMQMDEVLASVAETIKNFAVIYLLDIKKVPDFNTMYELYDPFTVMFFFRNKHIMIDLGTGNNN
        MS+LL H+HSGWAVD SIL EEERLV+IRFGH WDETCMQMDEVLASVAETIKNFAVIYL+DI +VPDFNTMYELYDP TVMFFFRNKHIMIDLGTGNNN
Subjt:  MSHLLQHIHSGWAVDPSILDEEERLVVIRFGHAWDETCMQMDEVLASVAETIKNFAVIYLLDIKKVPDFNTMYELYDPFTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYHGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDI+ETVY GARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYHGARKGRGLVIAPKDYSTKYRY

SwissProt top hitse value%identityAlignment
P83876 Thioredoxin-like protein 4A2.1e-6578.87Show/hide
Query:  MSHLLQHIHSGWAVDPSILDEEERLVVIRFGHAWDETCMQMDEVLASVAETIKNFAVIYLLDIKKVPDFNTMYELYDPFTVMFFFRNKHIMIDLGTGNNN
        MS++L H+H+GW VD +IL EE+R+VVIRFGH WD TCM+MDEVL S+AE +KNFAVIYL+DI +VPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNN
Subjt:  MSHLLQHIHSGWAVDPSILDEEERLVVIRFGHAWDETCMQMDEVLASVAETIKNFAVIYLLDIKKVPDFNTMYELYDPFTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYHGARKGRGLVIAPKDYSTKYRY
        KINWA++DKQE +DIIETVY GARKGRGLV++PKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYHGARKGRGLVIAPKDYSTKYRY

P83877 Thioredoxin-like protein 4A2.1e-6578.87Show/hide
Query:  MSHLLQHIHSGWAVDPSILDEEERLVVIRFGHAWDETCMQMDEVLASVAETIKNFAVIYLLDIKKVPDFNTMYELYDPFTVMFFFRNKHIMIDLGTGNNN
        MS++L H+H+GW VD +IL EE+R+VVIRFGH WD TCM+MDEVL S+AE +KNFAVIYL+DI +VPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNN
Subjt:  MSHLLQHIHSGWAVDPSILDEEERLVVIRFGHAWDETCMQMDEVLASVAETIKNFAVIYLLDIKKVPDFNTMYELYDPFTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYHGARKGRGLVIAPKDYSTKYRY
        KINWA++DKQE +DIIETVY GARKGRGLV++PKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYHGARKGRGLVIAPKDYSTKYRY

P87215 Mitosis protein dim12.3e-5670.42Show/hide
Query:  MSHLLQHIHSGWAVDPSILDEEERLVVIRFGHAWDETCMQMDEVLASVAETIKNFAVIYLLDIKKVPDFNTMYELYDPFTVMFFFRNKHIMIDLGTGNNN
        MS+ L H+HSGW VD +IL E+ERLVVIRFG   DE C++ DEVL  +AE + N AVIYL+DI +VPDFN MYELYD  T+MFF+RNKH+MIDLGTGNNN
Subjt:  MSHLLQHIHSGWAVDPSILDEEERLVVIRFGHAWDETCMQMDEVLASVAETIKNFAVIYLLDIKKVPDFNTMYELYDPFTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYHGARKGRGLVIAPKDYSTKYRY
        KINW L+DKQE IDIIET++ GARKG+GLVI+PKDYST++RY
Subjt:  KINWALKDKQEFIDIIETVYHGARKGRGLVIAPKDYSTKYRY

Q75BD8 Spliceosomal protein DIB12.2e-4661.59Show/hide
Query:  SHLLQHIHSGWAVDPSILDEEERLVVIRFGHAWDETCMQMDEVLASVAETIKNFAVIYLLDIKKVPDFNTMYELYDPFTVMFFFRNKHIMIDLGTGNNNK
        S  L H+HSGW VD +I+ EEERLVVIRFG   D +CM MDE+L S+AE + NFA IY+ D  +VPDFN MYEL DP TVMFF++NKH+  D GTGNNNK
Subjt:  SHLLQHIHSGWAVDPSILDEEERLVVIRFGHAWDETCMQMDEVLASVAETIKNFAVIYLLDIKKVPDFNTMYELYDPFTVMFFFRNKHIMIDLGTGNNNK

Query:  INWALKDKQEFIDIIETVYHGARKGRGLVIAPKDYSTK
        +N+ + +KQE IDIIETV+ GAR+ +GLV++P DY+ K
Subjt:  INWALKDKQEFIDIIETVYHGARKGRGLVIAPKDYSTK

Q9FE62 Thioredoxin-like protein YLS88.0e-7392.25Show/hide
Query:  MSHLLQHIHSGWAVDPSILDEEERLVVIRFGHAWDETCMQMDEVLASVAETIKNFAVIYLLDIKKVPDFNTMYELYDPFTVMFFFRNKHIMIDLGTGNNN
        MS+LL H+HSGWAVD SIL EEERLVVIRFGH WDETCMQMDEVLASVAETIKNFAVIYL+DI +VPDFNTMYELYDP TVMFFFRNKHIMIDLGTGNNN
Subjt:  MSHLLQHIHSGWAVDPSILDEEERLVVIRFGHAWDETCMQMDEVLASVAETIKNFAVIYLLDIKKVPDFNTMYELYDPFTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYHGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDIIETVY GARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYHGARKGRGLVIAPKDYSTKYRY

Arabidopsis top hitse value%identityAlignment
AT3G24730.1 mRNA splicing factor, thioredoxin-like U5 snRNP2.6e-1835.04Show/hide
Query:  MSHLLQHIHSGWAVDPSILDEEERLVVIRFGHAWDETCMQMDEVLASVAETIKNFAVIYLLDIKKVPDFNTMYELYD----PFTVMFFFRNKHIMIDLGT
        MS+LL+ + +   +D  I D  + ++V+RFG + D  C+Q DE+LA     +  FA + L+D+    D     + +D    P T+ FFF   H+ +D GT
Subjt:  MSHLLQHIHSGWAVDPSILDEEERLVVIRFGHAWDETCMQMDEVLASVAETIKNFAVIYLLDIKKVPDFNTMYELYD----PFTVMFFFRNKHIMIDLGT

Query:  GNNNKINWALKDKQEFIDIIETVYHGARKGRGLVIAP
         ++ K   A   KQ+FID++E +Y GA KG+ +V  P
Subjt:  GNNNKINWALKDKQEFIDIIETVYHGARKGRGLVIAP

AT5G08290.1 mRNA splicing factor, thioredoxin-like U5 snRNP5.7e-7492.25Show/hide
Query:  MSHLLQHIHSGWAVDPSILDEEERLVVIRFGHAWDETCMQMDEVLASVAETIKNFAVIYLLDIKKVPDFNTMYELYDPFTVMFFFRNKHIMIDLGTGNNN
        MS+LL H+HSGWAVD SIL EEERLVVIRFGH WDETCMQMDEVLASVAETIKNFAVIYL+DI +VPDFNTMYELYDP TVMFFFRNKHIMIDLGTGNNN
Subjt:  MSHLLQHIHSGWAVDPSILDEEERLVVIRFGHAWDETCMQMDEVLASVAETIKNFAVIYLLDIKKVPDFNTMYELYDPFTVMFFFRNKHIMIDLGTGNNN

Query:  KINWALKDKQEFIDIIETVYHGARKGRGLVIAPKDYSTKYRY
        KINWALKDKQEFIDIIETVY GARKGRGLVIAPKDYSTKYRY
Subjt:  KINWALKDKQEFIDIIETVYHGARKGRGLVIAPKDYSTKYRY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGCACTTGTTGCAGCATATTCACTCTGGATGGGCCGTTGACCCATCAATCCTCGACGAAGAAGAGCGTCTTGTCGTTATTCGTTTCGGCCATGCCTGGGACGAGAC
CTGTATGCAGATGGATGAAGTATTGGCCTCAGTTGCAGAGACGATTAAGAACTTTGCTGTAATATACCTTTTGGATATCAAGAAGGTTCCTGATTTCAACACAATGTACG
AGCTGTATGATCCCTTCACTGTCATGTTCTTCTTTAGGAACAAGCACATAATGATTGATCTTGGCACTGGAAACAACAACAAGATCAACTGGGCACTCAAGGATAAGCAG
GAGTTCATTGATATTATCGAAACTGTCTACCATGGAGCAAGGAAAGGACGTGGTTTGGTCATTGCACCCAAGGATTATTCGACCAAATATCGCTACTAA
mRNA sequenceShow/hide mRNA sequence
ATAATCACATGCTTTTTTATAATATTGGTATTAATGAATATTTATAATACATAATATTAATATTAAAACGCAGGAACGATTGCCTTATAAAATTGAAATATTAGGAAGAG
CCCATTTGTGGTGACCTAAGATTTGGGGGTGAAAGCATTGGGGGCATTTGAGTTGGTAATCTTGTTCTTGCATCTTCACGGAAGAGATGTCGCACTTGTTGCAGCATATT
CACTCTGGATGGGCCGTTGACCCATCAATCCTCGACGAAGAAGAGCGTCTTGTCGTTATTCGTTTCGGCCATGCCTGGGACGAGACCTGTATGCAGATGGATGAAGTATT
GGCCTCAGTTGCAGAGACGATTAAGAACTTTGCTGTAATATACCTTTTGGATATCAAGAAGGTTCCTGATTTCAACACAATGTACGAGCTGTATGATCCCTTCACTGTCA
TGTTCTTCTTTAGGAACAAGCACATAATGATTGATCTTGGCACTGGAAACAACAACAAGATCAACTGGGCACTCAAGGATAAGCAGGAGTTCATTGATATTATCGAAACT
GTCTACCATGGAGCAAGGAAAGGACGTGGTTTGGTCATTGCACCCAAGGATTATTCGACCAAATATCGCTACTAAGACGATTTGATGTCTATGCAATTTCTTATATATTT
TGCATCTGAGCGAAGAATGTGCCCTTTATGACATTCACTGCTCCAGAGAAGGATATGGTTTATTTTGGATGTCATTTTTGTGCTATGACTTCTCAAATCATTCGACTCAT
TGACGGTATTCTGAAGAGGGTATATAATGTTTATGCAAAAAAGTCGATTGATTAGGTATGTTAAGGTTGAATAAATTGCTTTCCGAACTATTGATGATTGTATATTTGAT
TACAATAGCTATTATGGAAATGACCACCGAACTACCTGGTTTATGATATACAAAAGATTATGTTTGTTTACCATGTCTTCTAATACACTTGGCTTGATAATTCTGTCATT
TGGGTACAAAGAGCTGAGTTTAATTTGCAATAAAAAGGTTACGAGTTTGAATCTTCCAA
Protein sequenceShow/hide protein sequence
MSHLLQHIHSGWAVDPSILDEEERLVVIRFGHAWDETCMQMDEVLASVAETIKNFAVIYLLDIKKVPDFNTMYELYDPFTVMFFFRNKHIMIDLGTGNNNKINWALKDKQ
EFIDIIETVYHGARKGRGLVIAPKDYSTKYRY