CuGenDBv2

Gene ID	Sed0020606
Organism	Sechium edule (Chayote v1)
Description	DNA-directed RNA polymerase subunit beta'
Genome location	Contig00297:170848..173622
RNA-Seq Expression	Sed0020606
Synteny	Sed0020606
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0009507 - chloroplast (cellular component) GO:0000287 - magnesium ion binding (molecular function) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR000722 - RNA polymerase, alpha subunit IPR006592 - RNA polymerase, N-terminal IPR007080 - RNA polymerase Rpb1, domain 1 IPR042102 - RNA polymerase Rpb1, domain 3 superfamily IPR044893 - RNA polymerase Rpb1, clamp domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AHM88680.1 RNA polymerase beta [Lagenaria siceraria]

5.6e-287

76.64

Show/hide

Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKKIRRLSILRLSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG
        RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLK++       L Y +FSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKKIRRLSILRLSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG

Query:  AGAIREQLADLDLRLIIDYSLVEWKELGKKDP-----------RKKGFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL
        AGAIREQLADLDLRLIIDYSLVEWKELG++ P           R+K FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL
Subjt:  AGAIREQLADLDLRLIIDYSLVEWKELGKKDP-----------RKKGFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL

Query:  YRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEA---------------DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC
        YRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEA               DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC
Subjt:  YRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEA---------------DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC

Query:  GLPREIAIELFQTFLIR-----------GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIRPSN--LFSGR-------TCYLFTSITGIDEV
        GLPREIAIELFQTFLIR           GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGI+     L  GR        C  F +    D++
Subjt:  GLPREIAIELFQTFLIR-----------GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIRPSN--LFSGR-------TCYLFTSITGIDEV

Query:  FVQIGI---IQVIAKIIKMKKFTIINI-------------------------------RKNP-----------------------FCNSYDAIGAYRQKR
         V + +    Q  A+++      +++                                R NP                       FCNSYDAIGAYRQKR
Subjt:  FVQIGI---IQVIAKIIKMKKFTIINI-------------------------------RKNP-----------------------FCNSYDAIGAYRQKR

Query:  INLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT
        INLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEILCIYI+TTVGHISLYREIEEAIQGFCRACSYGT
Subjt:  INLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT

QSQ72301.1 RNA polymerase beta' subunit [Benincasa hispida]

5.6e-287

76.64

Show/hide

Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKKIRRLSILRLSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG
        RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLK++       L Y +FSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKKIRRLSILRLSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG

Query:  AGAIREQLADLDLRLIIDYSLVEWKELGKKDP-----------RKKGFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL
        AGAIREQLADLDLRLIIDYSLVEWKELG++ P           R+K FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL
Subjt:  AGAIREQLADLDLRLIIDYSLVEWKELGKKDP-----------RKKGFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL

Query:  YRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEA---------------DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC
        YRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEA               DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC
Subjt:  YRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEA---------------DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC

Query:  GLPREIAIELFQTFLIR-----------GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIRPSN--LFSGR-------TCYLFTSITGIDEV
        GLPREIAIELFQTFLIR           GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGI+     L  GR        C  F +    D++
Subjt:  GLPREIAIELFQTFLIR-----------GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIRPSN--LFSGR-------TCYLFTSITGIDEV

Query:  FVQIGI---IQVIAKIIKMKKFTIINI-------------------------------RKNP-----------------------FCNSYDAIGAYRQKR
         V + +    Q  A+++      +++                                R NP                       FCNSYDAIGAYRQKR
Subjt:  FVQIGI---IQVIAKIIKMKKFTIINI-------------------------------RKNP-----------------------FCNSYDAIGAYRQKR

Query:  INLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT
        INLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEILCIYI+TTVGHISLYREIEEAIQGFCRACSYGT
Subjt:  INLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT

YP_009752318.1 RNA polymerase beta' subunit [Bryonia marmorata]

2.5e-287

76.98

Show/hide

Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKKIRRLSILRLSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG
        RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLK++       L Y +FSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKKIRRLSILRLSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG

Query:  AGAIREQLADLDLRLIIDYSLVEWKELGKKDP-----------RKKGFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL
        AGAIREQLADLDLRLIIDYSLVEWKELG++ P           R+K FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL
Subjt:  AGAIREQLADLDLRLIIDYSLVEWKELGKKDP-----------RKKGFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL

Query:  YRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEA---------------DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC
        YRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEA               DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC
Subjt:  YRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEA---------------DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC

Query:  GLPREIAIELFQTFLIR-----------GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIRPSN--LFSGR-------TCYLFTSITGIDEV
        GLPREIAIELFQTFLIR           GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGI+     L  GR        C  F +    D++
Subjt:  GLPREIAIELFQTFLIR-----------GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIRPSN--LFSGR-------TCYLFTSITGIDEV

Query:  FVQIGI---IQVIAKIIKMKKFTIINI-------------------------------RKNP--------------------FCNSYDAIGAYRQKRINL
         V + +    Q  A+++      +++                                R NP                    FCNSYDAIGAYRQKRINL
Subjt:  FVQIGI---IQVIAKIIKMKKFTIINI-------------------------------RKNP--------------------FCNSYDAIGAYRQKRINL

Query:  DSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT
        DSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEILCIYI+TTVGHISLYREIEEAIQGFCRACSYGT
Subjt:  DSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT

YP_009945408.1 RNA polymerase beta' subunit [Sechium edule]

1.1e-287

77.01

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKKIRRLSILRLSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG
        RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLK++       L Y +FSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKKIRRLSILRLSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG

Query:  AGAIREQLADLDLRLIIDYSLVEWKELGKKDP-----------RKKGFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL
        AGAIREQLADLDLRLIIDYSLVEWKELG++ P           R+K FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL
Subjt:  AGAIREQLADLDLRLIIDYSLVEWKELGKKDP-----------RKKGFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL

Query:  YRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEA---------------DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC
        YRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEA               DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC
Subjt:  YRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEA---------------DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC

Query:  GLPREIAIELFQTFLIR-----------GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIRPSN--LFSGR-------TCYLFTSITGIDEV
        GLPREIAIELFQTFLIR           GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGI+     L  GR        C  F +    D++
Subjt:  GLPREIAIELFQTFLIR-----------GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIRPSN--LFSGR-------TCYLFTSITGIDEV

Query:  FVQIGI---IQVIAKIIKMKKFTIINI-------------------------------RKNP---------------------FCNSYDAIGAYRQKRIN
         V + +    Q  A+++      +++                                R NP                     FCNSYDAIGAYRQKRIN
Subjt:  FVQIGI---IQVIAKIIKMKKFTIINI-------------------------------RKNP---------------------FCNSYDAIGAYRQKRIN

Query:  LDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT
        LDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT
Subjt:  LDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT

YP_010131085.1 RNA polymerase beta' subunit [Benincasa hispida]

5.6e-287

76.64

Show/hide

Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKKIRRLSILRLSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG
        RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLK++       L Y +FSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKKIRRLSILRLSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG

Query:  AGAIREQLADLDLRLIIDYSLVEWKELGKKDP-----------RKKGFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL
        AGAIREQLADLDLRLIIDYSLVEWKELG++ P           R+K FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL
Subjt:  AGAIREQLADLDLRLIIDYSLVEWKELGKKDP-----------RKKGFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL

Query:  YRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEA---------------DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC
        YRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEA               DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC
Subjt:  YRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEA---------------DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC

Query:  GLPREIAIELFQTFLIR-----------GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIRPSN--LFSGR-------TCYLFTSITGIDEV
        GLPREIAIELFQTFLIR           GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGI+     L  GR        C  F +    D++
Subjt:  GLPREIAIELFQTFLIR-----------GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIRPSN--LFSGR-------TCYLFTSITGIDEV

Query:  FVQIGI---IQVIAKIIKMKKFTIINI-------------------------------RKNP-----------------------FCNSYDAIGAYRQKR
         V + +    Q  A+++      +++                                R NP                       FCNSYDAIGAYRQKR
Subjt:  FVQIGI---IQVIAKIIKMKKFTIINI-------------------------------RKNP-----------------------FCNSYDAIGAYRQKR

Query:  INLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT
        INLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEILCIYI+TTVGHISLYREIEEAIQGFCRACSYGT
Subjt:  INLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT

TrEMBL top hits

e value

%identity

Alignment

A0A218KG20 DNA-directed RNA polymerase subunit beta'

1.3e-286

76.5

Show/hide

Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKKIRRLSILRLSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG
        RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLK++       L Y +FSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKKIRRLSILRLSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG

Query:  AGAIREQLADLDLRLIIDYSLVEWKELGKKDP-----------RKKGFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL
        AGAIREQLADLDLRLIIDYSLVEWKELG++ P           R+K FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL
Subjt:  AGAIREQLADLDLRLIIDYSLVEWKELGKKDP-----------RKKGFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL

Query:  YRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEA---------------DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC
        YRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEA               DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC
Subjt:  YRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEA---------------DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC

Query:  GLPREIAIELFQTFLIR-----------GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIRPSN--LFSGR-------TCYLFTSITGIDEV
        GLPREIAIELFQTFLIR           GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGI+     L  GR        C  F +    D++
Subjt:  GLPREIAIELFQTFLIR-----------GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIRPSN--LFSGR-------TCYLFTSITGIDEV

Query:  FVQIGI---IQVIAKIIKMKKFTIINI-------------------------------RKNP-----------------------FCNSYDAIGAYRQKR
         V + +    Q  A+++      +++                                R NP                       FCNSYDAIGAYRQKR
Subjt:  FVQIGI---IQVIAKIIKMKKFTIINI-------------------------------RKNP-----------------------FCNSYDAIGAYRQKR

Query:  INLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT
        INLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYG YLIVKSIKKEILCIYI+TTVGHISLYREIEEAIQGFCRACSYGT
Subjt:  INLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT

A0A6H0EPL5 DNA-directed RNA polymerase subunit beta'

1.2e-287

76.98

Show/hide

Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKKIRRLSILRLSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG
        RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLK++       L Y +FSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKKIRRLSILRLSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG

Query:  AGAIREQLADLDLRLIIDYSLVEWKELGKKDP-----------RKKGFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL
        AGAIREQLADLDLRLIIDYSLVEWKELG++ P           R+K FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL
Subjt:  AGAIREQLADLDLRLIIDYSLVEWKELGKKDP-----------RKKGFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL

Query:  YRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEA---------------DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC
        YRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEA               DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC
Subjt:  YRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEA---------------DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC

Query:  GLPREIAIELFQTFLIR-----------GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIRPSN--LFSGR-------TCYLFTSITGIDEV
        GLPREIAIELFQTFLIR           GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGI+     L  GR        C  F +    D++
Subjt:  GLPREIAIELFQTFLIR-----------GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIRPSN--LFSGR-------TCYLFTSITGIDEV

Query:  FVQIGI---IQVIAKIIKMKKFTIINI-------------------------------RKNP--------------------FCNSYDAIGAYRQKRINL
         V + +    Q  A+++      +++                                R NP                    FCNSYDAIGAYRQKRINL
Subjt:  FVQIGI---IQVIAKIIKMKKFTIINI-------------------------------RKNP--------------------FCNSYDAIGAYRQKRINL

Query:  DSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT
        DSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEILCIYI+TTVGHISLYREIEEAIQGFCRACSYGT
Subjt:  DSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT

A0A6H0ER08 DNA-directed RNA polymerase subunit beta'

5.5e-288

77.01

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKKIRRLSILRLSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG
        RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLK++       L Y +FSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKKIRRLSILRLSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG

Query:  AGAIREQLADLDLRLIIDYSLVEWKELGKKDP-----------RKKGFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL
        AGAIREQLADLDLRLIIDYSLVEWKELG++ P           R+K FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL
Subjt:  AGAIREQLADLDLRLIIDYSLVEWKELGKKDP-----------RKKGFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL

Query:  YRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEA---------------DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC
        YRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEA               DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC
Subjt:  YRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEA---------------DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC

Query:  GLPREIAIELFQTFLIR-----------GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIRPSN--LFSGR-------TCYLFTSITGIDEV
        GLPREIAIELFQTFLIR           GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGI+     L  GR        C  F +    D++
Subjt:  GLPREIAIELFQTFLIR-----------GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIRPSN--LFSGR-------TCYLFTSITGIDEV

Query:  FVQIGI---IQVIAKIIKMKKFTIINI-------------------------------RKNP---------------------FCNSYDAIGAYRQKRIN
         V + +    Q  A+++      +++                                R NP                     FCNSYDAIGAYRQKRIN
Subjt:  FVQIGI---IQVIAKIIKMKKFTIINI-------------------------------RKNP---------------------FCNSYDAIGAYRQKRIN

Query:  LDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT
        LDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT
Subjt:  LDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT

A0A7T3QNJ1 RNA polymerase beta' subunit

2.7e-287

76.64

Show/hide

Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKKIRRLSILRLSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG
        RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLK++       L Y +FSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKKIRRLSILRLSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG

Query:  AGAIREQLADLDLRLIIDYSLVEWKELGKKDP-----------RKKGFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL
        AGAIREQLADLDLRLIIDYSLVEWKELG++ P           R+K FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL
Subjt:  AGAIREQLADLDLRLIIDYSLVEWKELGKKDP-----------RKKGFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL

Query:  YRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEA---------------DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC
        YRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEA               DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC
Subjt:  YRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEA---------------DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC

Query:  GLPREIAIELFQTFLIR-----------GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIRPSN--LFSGR-------TCYLFTSITGIDEV
        GLPREIAIELFQTFLIR           GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGI+     L  GR        C  F +    D++
Subjt:  GLPREIAIELFQTFLIR-----------GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIRPSN--LFSGR-------TCYLFTSITGIDEV

Query:  FVQIGI---IQVIAKIIKMKKFTIINI-------------------------------RKNP-----------------------FCNSYDAIGAYRQKR
         V + +    Q  A+++      +++                                R NP                       FCNSYDAIGAYRQKR
Subjt:  FVQIGI---IQVIAKIIKMKKFTIINI-------------------------------RKNP-----------------------FCNSYDAIGAYRQKR

Query:  INLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT
        INLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEILCIYI+TTVGHISLYREIEEAIQGFCRACSYGT
Subjt:  INLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT

X2F7V3 DNA-directed RNA polymerase subunit beta'

2.7e-287

76.64

Show/hide

Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKKIRRLSILRLSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG
        RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLK++       L Y +FSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKKIRRLSILRLSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG

Query:  AGAIREQLADLDLRLIIDYSLVEWKELGKKDP-----------RKKGFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL
        AGAIREQLADLDLRLIIDYSLVEWKELG++ P           R+K FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL
Subjt:  AGAIREQLADLDLRLIIDYSLVEWKELGKKDP-----------RKKGFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL

Query:  YRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEA---------------DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC
        YRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEA               DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC
Subjt:  YRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEA---------------DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC

Query:  GLPREIAIELFQTFLIR-----------GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIRPSN--LFSGR-------TCYLFTSITGIDEV
        GLPREIAIELFQTFLIR           GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGI+     L  GR        C  F +    D++
Subjt:  GLPREIAIELFQTFLIR-----------GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIRPSN--LFSGR-------TCYLFTSITGIDEV

Query:  FVQIGI---IQVIAKIIKMKKFTIINI-------------------------------RKNP-----------------------FCNSYDAIGAYRQKR
         V + +    Q  A+++      +++                                R NP                       FCNSYDAIGAYRQKR
Subjt:  FVQIGI---IQVIAKIIKMKKFTIINI-------------------------------RKNP-----------------------FCNSYDAIGAYRQKR

Query:  INLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT
        INLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEILCIYI+TTVGHISLYREIEEAIQGFCRACSYGT
Subjt:  INLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT

SwissProt top hits

e value

%identity

Alignment

B1A926 DNA-directed RNA polymerase subunit beta'

1.6e-281

74.01

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIGLVSPQQISAWAN+ LPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGD+KED KFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKKIRRLSILRLSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG
        RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLK++       L Y +FSFARPI KKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKKIRRLSILRLSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG

Query:  AGAIREQLADLDLRLIIDYSLVEWKELGKKDP-----------RKKGFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL
        AGAIREQLADLDL++IIDYS +EWKELG++ P           R+K FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL
Subjt:  AGAIREQLADLDLRLIIDYSLVEWKELGKKDP-----------RKKGFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL

Query:  YRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEA---------------DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC
        YRRVIYRNNTL DLLTTSRSTPGELVMCQEKLVQEA               DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC
Subjt:  YRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEA---------------DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC

Query:  GLPREIAIELFQTFLIR-----------GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIRPSN--LFSGRTCYL-------FTSITGIDEV
        GLPREIAIELFQTF+IR           GVAKSKIREKEPI+WEILQEVMQGHPVLLNRAPTLHRLGI+     L  GR   L       F +    D++
Subjt:  GLPREIAIELFQTFLIR-----------GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIRPSN--LFSGRTCYL-------FTSITGIDEV

Query:  FVQIGIIQVIAKIIKMKKFTIINI----------------------------------RKNP-----------------------FCNSYDAIGAYRQKR
         V + +        ++  F+ +N+                                  R NP                       FCNSYDAIGAYRQKR
Subjt:  FVQIGIIQVIAKIIKMKKFTIINI----------------------------------RKNP-----------------------FCNSYDAIGAYRQKR

Query:  INLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT
        INLDSPLWLRW+LDQRVIASREAPIEVHYESLGT+HEIYG YLIV+S+KKEILCIYI+TTVGHISLYREIEEAIQGFCRACSY T
Subjt:  INLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT

Q0ZJ29 DNA-directed RNA polymerase subunit beta'

7.1e-277

72.93

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIG VSPQQISAWANK LPNGEI+GEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGD+K+D KFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKKIRRLSILRLSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG
        RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLK++       L Y +FSFARPI KKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKKIRRLSILRLSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG

Query:  AGAIREQLADLDLRLIIDYSLVEWKELGKKDP-----------RKKGFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL
        AGAIREQL DLDLR+IIDYSLVEWKELG++ P           R+K FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL
Subjt:  AGAIREQLADLDLRLIIDYSLVEWKELGKKDP-----------RKKGFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL

Query:  YRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEA---------------DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC
        YRRVIYRNNTL DLLTTSRSTPGELVMCQEKLVQEA               DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLH+C
Subjt:  YRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEA---------------DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC

Query:  GLPREIAIELFQTFLIR-----------GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIRPSN--LFSGRTCYL-------FTSITGIDEV
        GLPREIAIELFQTFLIR           GVAKS+IREKEPIVWEILQEVM+GHPVLLNRAPTLHRLGI+     L  GR   L       F +    D++
Subjt:  GLPREIAIELFQTFLIR-----------GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIRPSN--LFSGRTCYL-------FTSITGIDEV

Query:  FVQIGIIQVIAKIIKMKKFTIINI----------------------------------RKNP-------------------------FCNSYDAIGAYRQ
         V + +        ++  F+ +N+                                  R NP                         FCNSYDAIGAYR 
Subjt:  FVQIGIIQVIAKIIKMKKFTIINI----------------------------------RKNP-------------------------FCNSYDAIGAYRQ

Query:  KRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT
        KRINL SPLWLRW+LDQR+IAS+EAPIEVHYESLGT+HEIYG YLIV+S+KKEI CIYI+TTVGHISLYREIEEAIQGFCRACSY T
Subjt:  KRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT

Q49L07 DNA-directed RNA polymerase subunit beta'

1.2e-279

73.22

Show/hide

Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIG VSPQQISAWA K LPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGD+KED KFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKKIRRLSILRLSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG
        RYQMGYIKLACPVTHVWYLKRLPSYIAN+LDKPLK++       L Y +FSFARPIAKKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREISTG
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKKIRRLSILRLSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG

Query:  AGAIREQLADLDLRLIIDYSLVEWKELGKKDP-----------RKKGFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL
        AGAIREQLADLDLR+IIDYSLVEWKELG++ P           R+K FLVRRMELAKHF+RTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL
Subjt:  AGAIREQLADLDLRLIIDYSLVEWKELGKKDP-----------RKKGFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL

Query:  YRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEA---------------DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC
        YRRVIYRNNTL DLLTTSRSTPGELVMCQEKLVQEA               DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSL LHRC
Subjt:  YRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEA---------------DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC

Query:  GLPREIAIELFQTFLIR-----------GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIRPSN--LFSGRTCYL-------FTSITGIDEV
        GLPREIAIELFQTF+IR           GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGI+     L  GR   L       F +    D++
Subjt:  GLPREIAIELFQTFLIR-----------GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIRPSN--LFSGRTCYL-------FTSITGIDEV

Query:  FVQIGIIQVIAKIIKMKKFTIINI----------------------------------RKNP-------------------------FCNSYDAIGAYRQ
         V + +        ++  F+ +N+                                  R NP                         FCNSYDAIGAYRQ
Subjt:  FVQIGIIQVIAKIIKMKKFTIINI----------------------------------RKNP-------------------------FCNSYDAIGAYRQ

Query:  KRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT
        KRINLDSPLWLRWRLDQR+IASRE PIE+HYESLGT+HEIYG YLIV+S+KKEI+CIYI+TTVGHISL+REIEEAIQGFCRACS+GT
Subjt:  KRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT

Q4VZP2 DNA-directed RNA polymerase subunit beta'

3.7e-289

76.5

Show/hide

Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKKIRRLSILRLSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG
        RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLK++       L Y +FSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKKIRRLSILRLSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG

Query:  AGAIREQLADLDLRLIIDYSLVEWKELGKKDP-----------RKKGFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL
        AGAIREQLADLDLRLIIDYSLVEWKELG++ P           R+K FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL
Subjt:  AGAIREQLADLDLRLIIDYSLVEWKELGKKDP-----------RKKGFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL

Query:  YRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEA---------------DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC
        YRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEA               DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC
Subjt:  YRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEA---------------DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC

Query:  GLPREIAIELFQTFLIR-----------GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIRPSN--LFSGR-------TCYLFTSITGIDEV
        GLPREIAIELFQTFLIR           GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGI+     L  GR        C  F +    D++
Subjt:  GLPREIAIELFQTFLIR-----------GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIRPSN--LFSGR-------TCYLFTSITGIDEV

Query:  FVQIGI---IQVIAKIIKMKKFTIINI-------------------------------RKNP-----------------------FCNSYDAIGAYRQKR
         V + +    Q  A+++      +++                                R NP                       FCNSYDAIGAYRQKR
Subjt:  FVQIGI---IQVIAKIIKMKKFTIINI-------------------------------RKNP-----------------------FCNSYDAIGAYRQKR

Query:  INLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT
        INLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYG YLIVKSIKKEILCIYI+TTVGHISLYREIEEAIQGFCRACSYGT
Subjt:  INLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT

Q68S15 DNA-directed RNA polymerase subunit beta'

1.1e-277

73.47

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIG VSPQQIS WANK LPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIG++KED KFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKKIRRLSILRLSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG
        RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLK++       L Y +FSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKKIRRLSILRLSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG

Query:  AGAIREQLADLDLRLIIDYSLVEWKELGKKDP-----------RKKGFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL
        AGAIREQLADLDLR+IID SLVEWKELG+  P           R+K FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL
Subjt:  AGAIREQLADLDLRLIIDYSLVEWKELGKKDP-----------RKKGFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL

Query:  YRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEA---------------DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC
        YRRVIYRNNTL DLLTTSRSTPGELVMCQEKLVQEA               DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC
Subjt:  YRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEA---------------DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC

Query:  GLPREIAIELFQTFLIR-----------GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIRPSN--LFSGRTCYL-------FTSITGIDEV
        GLPREIAIELFQTF+IR           GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGI+     L  GR   L       F +    D++
Subjt:  GLPREIAIELFQTFLIR-----------GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIRPSN--LFSGRTCYL-------FTSITGIDEV

Query:  FVQIGIIQVIAKIIKMKKFTIINI----------------------------------RKNP-------------------------FCNSYDAIGAYRQ
         V + +        ++  F+ +N+                                  R NP                         FCNSYDAIGAYRQ
Subjt:  FVQIGIIQVIAKIIKMKKFTIINI----------------------------------RKNP-------------------------FCNSYDAIGAYRQ

Query:  KRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYG
        KRINLDSPLWLRWRLDQRVI+++EAP+EVHYESLGT++EIYG YLIV+SIKKEIL IYI+TTVGHISLYREIEEAIQGFC+ACSYG
Subjt:  KRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYG

Arabidopsis top hits

e value

%identity

Alignment

AT1G63020.1 nuclear RNA polymerase D1A

3.2e-06

24.62

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Query:  LCLLPVLPPELRP---IIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEADGHNKVYKSFSDVIEGKEGRF-RETLLGKRV
        L   PV P   R    + Q +G +L+  +   +Y++++      ++L +          +  E +    D  N  Y+  SD  +    RF ++ LLGKR 
Subjt:  LCLLPVLPPELRP---IIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEADGHNKVYKSFSDVIEGKEGRF-RETLLGKRV

Query:  DYSGRSVIVVGPSLSLHRCGLPREIAIEL-------------FQTFLIRGVAKSK---IREKEPIVW----------EILQEVMQGHPVLLNRAPTLHR
        D++ R+V+V  PSL L+  G+P  IA  L               T  +  +  +K   +R  + +V           +I + +M G  VL+NR P++H+
Subjt:  DYSGRSVIVVGPSLSLHRCGLPREIAIEL-------------FQTFLIRGVAKSK---IREKEPIVW----------EILQEVMQGHPVLLNRAPTLHR

AT4G35800.1 RNA polymerase II large subunit

3.0e-12

29.45

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Query:  PEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQ---------EADGH-------NKVYKSFSDV
        P+WM+L +LP+ PP +RP + +D       D+      +I  N  L          P  ++    +L+Q         E  G         +  KS    
Subjt:  PEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQ---------EADGH-------NKVYKSFSDV

Query:  IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIEL
        ++ KEGR R  L+GKRVD+S R+VI   P++++   G+P  IA+ L
Subjt:  IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIEL

AT5G60040.1 nuclear RNA polymerase C1

8.2e-10

23.66

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Query:  PEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEADGHNKVYKSFSDV------------IEGK
        PE +++  + V P  +RP + I G +   +D+    +++I  N +L  +L+   S+P  + +     ++ A   N   +   +             ++GK
Subjt:  PEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEADGHNKVYKSFSDV------------IEGK

Query:  EGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA-------------IELFQTFLIRGVAK----------------------SKIREKEPIVWE
         GRFR  L GKRV+++GR+VI   P+L +   G+P  +A             IE  +  +  G  K                       +I ++  I   
Subjt:  EGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA-------------IELFQTFLIRGVAK----------------------SKIREKEPIVWE

Query:  ILQEVMQGHPVLLNRAPTLHRLGI
        + + + +G  VL NR P+LHR+ I
Subjt:  ILQEVMQGHPVLLNRAPTLHRLGI

AT5G60040.2 nuclear RNA polymerase C1

8.2e-10

23.66

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Query:  PEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEADGHNKVYKSFSDV------------IEGK
        PE +++  + V P  +RP + I G +   +D+    +++I  N +L  +L+   S+P  + +     ++ A   N   +   +             ++GK
Subjt:  PEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEADGHNKVYKSFSDV------------IEGK

Query:  EGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA-------------IELFQTFLIRGVAK----------------------SKIREKEPIVWE
         GRFR  L GKRV+++GR+VI   P+L +   G+P  +A             IE  +  +  G  K                       +I ++  I   
Subjt:  EGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA-------------IELFQTFLIRGVAK----------------------SKIREKEPIVWE

Query:  ILQEVMQGHPVLLNRAPTLHRLGI
        + + + +G  VL NR P+LHR+ I
Subjt:  ILQEVMQGHPVLLNRAPTLHRLGI

ATCG00180.1 DNA-directed RNA polymerase family protein

5.8e-274

71.97

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIGLVSPQQISAWA K +PNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGD+KED KFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKKIRRLSILRLSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG
        RYQMGYIKL CPVTHVWYLKRLPSYIANLLDKPLK++       L Y +FSFARPI KKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFD FRNREISTG
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKKIRRLSILRLSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTG

Query:  AGAIREQLADLDLRLIIDYSLVEWKELGKKDP-----------RKKGFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL
        AGAIREQLADLDLR+II+ SLVEWK+LG++ P           R+K FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI+GGKLMSSDINEL
Subjt:  AGAIREQLADLDLRLIIDYSLVEWKELGKKDP-----------RKKGFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINEL

Query:  YRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEA---------------DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC
        YRRVIYRNNTL DLLTTSRSTPGELVMCQEKLVQEA               DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC
Subjt:  YRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEA---------------DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRC

Query:  GLPREIAIELFQTFLIR-----------GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIRPSN--LFSGRT-------CYLFTSITGIDEV
        GLPREIAIELFQTF+IR           GVAKS+IREK+PIVWEILQEVMQGHPVLLNRAPTLHRLGI+     L  GRT       C  F +    D++
Subjt:  GLPREIAIELFQTFLIR-----------GVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIRPSN--LFSGRT-------CYLFTSITGIDEV

Query:  FVQIGIIQVIAKIIKMKKFTIINI----------------------------------RKNP-----------------------FCNSYDAIGAYRQKR
         V + +        ++  F+ +N+                                  R NP                       FCNSYDAIGAYRQK+
Subjt:  FVQIGIIQVIAKIIKMKKFTIINI----------------------------------RKNP-----------------------FCNSYDAIGAYRQKR

Query:  INLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT
        INLDSPLWLRW+LDQRVIASRE PIEVHYES G +HEIY  YLIV+S+KKE  CIYI+TTVGHIS YREIEEAIQGF +ACSY T
Subjt:  INLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEILCIYIQTTVGHISLYREIEEAIQGFCRACSYGT

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGATTGATCGGTATAAACATCAACAACTCCGAATTGGATTAGTTTCTCCTCAACAAATAAGTGCTTGGGCCAATAAAACCCTACCTAATGGCGAGATAGTTGGAGAGGT
AACAAAACCCTATACTTTTCATTACAAAACCAATAAACCTGAAAAAGATGGATTATTTTGTGAAAGAATTTTTGGGCCTATAAAAAGCGGGATTTGTGCTTGTGGAAATT
ATCGAGTAATCGGAGATAAAAAAGAAGATTCGAAATTTTGTGAACAATGCGGAGTCGAATTTGTTGATTCTCGGATACGACGATATCAAATGGGCTATATTAAACTGGCA
TGCCCAGTAACCCATGTGTGGTATTTGAAACGTCTTCCTAGTTATATCGCGAATCTTTTAGATAAACCTCTTAAAAAAATTAGAAGGCTTAGTATATTGCGATTATCCTA
TCCAAATTTTTCGTTTGCTAGGCCCATAGCTAAAAAACCTACTTTCTTACGATTACGGGGTTCATTCGAATATGAAATCCAATCCTGGAAATACAGCATCCCACTTTTTT
TTACTACCCAAGGCTTCGATACATTTAGAAATCGAGAAATTTCTACCGGAGCAGGTGCTATACGAGAACAATTAGCCGATCTGGATTTGCGACTTATTATAGATTATTCG
TTGGTAGAATGGAAAGAATTGGGGAAGAAGGACCCGCGGAAGAAAGGATTTTTGGTTAGACGTATGGAATTAGCTAAGCATTTTATTCGAACAAATATAGAACCCGAATG
GATGGTTTTATGTCTATTACCAGTTCTTCCTCCCGAGTTGAGACCAATCATTCAGATAGATGGGGGTAAACTAATGAGCTCGGATATTAATGAACTCTATAGAAGAGTTA
TCTATCGGAACAATACTCTTATTGATCTATTAACAACAAGTAGATCTACGCCAGGAGAATTAGTAATGTGTCAGGAGAAATTGGTACAAGAAGCCGATGGCCATAATAAA
GTTTACAAGTCGTTTTCCGATGTAATTGAAGGCAAAGAGGGAAGATTTCGTGAGACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTAGGTCC
CTCACTTTCATTACATCGATGTGGATTGCCTCGCGAAATCGCAATAGAGCTTTTCCAGACATTTTTAATTCGTGGCGTTGCTAAGAGTAAAATTAGGGAAAAAGAACCCA
TTGTATGGGAAATACTTCAGGAAGTTATGCAGGGGCATCCCGTATTGCTAAATAGAGCGCCTACTCTGCATAGATTAGGCATCAGGCCTTCCAACCTATTTAGTGGACGG
ACGTGCTATTTGTTTACATCCATTACGGGAATCGACGAGGTATTTGTGCAAATCGGTATAATCCAGGTAATCGCAAAAATAATAAAAATGAAAAAATTTACAATAATAAA
TATACGAAAGAACCCTTTTTGTAATTCCTATGATGCAATTGGAGCTTATCGCCAGAAAAGAATCAATTTAGATAGTCCGTTGTGGCTCCGATGGCGACTAGATCAACGCG
TTATTGCTTCAAGAGAAGCCCCTATCGAAGTTCACTATGAATCTTTGGGTACCCATCATGAGATTTATGGGTCCTATCTAATAGTAAAAAGTATAAAAAAAGAAATTCTT
TGTATATACATTCAAACCACTGTTGGTCATATTTCTCTTTATCGAGAAATCGAAGAGGCTATACAAGGATTTTGCCGGGCCTGTTCATATGGTACCTAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLA
CPVTHVWYLKRLPSYIANLLDKPLKKIRRLSILRLSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYS
LVEWKELGKKDPRKKGFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEADGHNK
VYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIRPSNLFSGR
TCYLFTSITGIDEVFVQIGIIQVIAKIIKMKKFTIINIRKNPFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEIL
CIYIQTTVGHISLYREIEEAIQGFCRACSYGT

Sed0020606 (gene) of Chayote v1 genome