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Sed0020617 (gene) of Chayote v1 genome

Gene IDSed0020617
OrganismSechium edule (Chayote v1)
Descriptionclassical arabinogalactan protein 4
Genome locationLG06:8163744..8164244
RNA-Seq ExpressionSed0020617
SyntenySed0020617
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576849.1 hypothetical protein SDJN03_24423, partial [Cucurbita argyrosperma subsp. sororia]1.9e-3864.67Show/hide
Query:  MASTALLNVLTAAILLISAAAISPAPSPMLTPESPPWKWTPDT----TPPTAEPPSPAWSLPATSPEFSPVPSSEAPTSPPETNPPMLSPAE-----KSP
        MAS A+LNV+TAA+LLISAAA SP PSP  +PESPPWKWTPDT    +PP  EPPSP+     + PE SPVPSS+ PTSPP+ NPP LSPA      KSP
Subjt:  MASTALLNVLTAAILLISAAAISPAPSPMLTPESPPWKWTPDT----TPPTAEPPSPAWSLPATSPEFSPVPSSEAPTSPPETNPPMLSPAE-----KSP

Query:  SHAPSPAKAKSPAPAPMKMIPTPAKAPKSSESPASSAPSLNGEME--TPASAPSG----NGGGANRFAI---VGFGLMALALIA
         HAPSP+K K+PAPAP KM PTPA+APKSS  P SS P+ NGEME  TP+ AP+     NGG ANRFAI   V FGLMA ALIA
Subjt:  SHAPSPAKAKSPAPAPMKMIPTPAKAPKSSESPASSAPSLNGEME--TPASAPSG----NGGGANRFAI---VGFGLMALALIA

KAG7014869.1 hypothetical protein SDJN02_22499, partial [Cucurbita argyrosperma subsp. argyrosperma]1.9e-3864.67Show/hide
Query:  MASTALLNVLTAAILLISAAAISPAPSPMLTPESPPWKWTPDT----TPPTAEPPSPAWSLPATSPEFSPVPSSEAPTSPPETNPPMLSPAE-----KSP
        MAS A+LNV+TAA+LLISAAA SP PSP  +PESPPWKWTPDT    +PP  EPPSP+     + PE SPVPSS+ PTSPP+ NPP LSPA      KSP
Subjt:  MASTALLNVLTAAILLISAAAISPAPSPMLTPESPPWKWTPDT----TPPTAEPPSPAWSLPATSPEFSPVPSSEAPTSPPETNPPMLSPAE-----KSP

Query:  SHAPSPAKAKSPAPAPMKMIPTPAKAPKSSESPASSAPSLNGEME--TPASAPSG----NGGGANRFAI---VGFGLMALALIA
         HAPSP+K K+PAPAP KM PTPA+APKSS  P SS P+ NGEME  TP+ AP+     NGG ANRFAI   V FGLMA ALIA
Subjt:  SHAPSPAKAKSPAPAPMKMIPTPAKAPKSSESPASSAPSLNGEME--TPASAPSG----NGGGANRFAI---VGFGLMALALIA

XP_022922559.1 extensin-like [Cucurbita moschata]2.1e-3763.59Show/hide
Query:  MASTALLNVLTAAILLISAAAISPAPSPMLTPESPPWKWTPDT----TPPTAEPPSPAWSLPATSPEFSPVPSSEAPTSPPETNPPMLSPAE-----KSP
        MAS A+LNV+TAA+LLISA+A SP PSP  +PESPPWKWTPDT    +PP  EPPSP+     + PE SPVPSS+ PTSPP+ NPP LSPA      KSP
Subjt:  MASTALLNVLTAAILLISAAAISPAPSPMLTPESPPWKWTPDT----TPPTAEPPSPAWSLPATSPEFSPVPSSEAPTSPPETNPPMLSPAE-----KSP

Query:  SHAPSPAKAKSPAPAPMKMIPTPAKAPKSSESPASSAPSLNGEME--TPASAPSG----NGGGANRFAI---VGFGLMALALIA
         HAPSP+K K+PAPAP KM  TPA+APKSS +P SS P+ NGEME  TP+ AP+     NGG ANRFAI   V FGLMA ALIA
Subjt:  SHAPSPAKAKSPAPAPMKMIPTPAKAPKSSESPASSAPSLNGEME--TPASAPSG----NGGGANRFAI---VGFGLMALALIA

XP_022985113.1 extensin-like [Cucurbita maxima]5.2e-3663.04Show/hide
Query:  MASTALLNVLTAAILLISAAAISPAPSPMLTPESPPWKWTPDT----TPPTAEPPSPAWSLPATSPEFSPVPSSEAPTSPPETNPPMLSPAE-----KSP
        MAS A+LNV+TAA+LLISA+A SP PS   +PES PWKWTPDT    +PP  EPPSP+     + PE SPVPSS+ PTSP + NPP LSPA      KSP
Subjt:  MASTALLNVLTAAILLISAAAISPAPSPMLTPESPPWKWTPDT----TPPTAEPPSPAWSLPATSPEFSPVPSSEAPTSPPETNPPMLSPAE-----KSP

Query:  SHAPSPAKAKSPAPAPMKMIPTPAKAPKSSESPASSAPSLNGEME--TPASAPSG----NGGGANRFAI---VGFGLMALALIA
         HAPSP+K K+PAPAP KM PTPA+APKSS +PASS P+ NGEME  TP+ AP+     NGG ANRFAI   V FGLMA ALIA
Subjt:  SHAPSPAKAKSPAPAPMKMIPTPAKAPKSSESPASSAPSLNGEME--TPASAPSG----NGGGANRFAI---VGFGLMALALIA

XP_038877309.1 vegetative cell wall protein gp1-like [Benincasa hispida]2.0e-3562.11Show/hide
Query:  MASTALLNVLTAAILLISAAAISPAPSPMLTPESPPWKWTPDTTPP----------TAEPPSPAWSLPATSPEFSPVPSSEAPTSPPETNPPMLSPAE--
        MAS+ +L VLT A+LLISAAA SP PSP   PESP WKWTP   PP          T  PPSP  S PAT PE SP+PSS APT PP+ NPP LSP    
Subjt:  MASTALLNVLTAAILLISAAAISPAPSPMLTPESPPWKWTPDTTPP----------TAEPPSPAWSLPATSPEFSPVPSSEAPTSPPETNPPMLSPAE--

Query:  ---KSPSHAPSPAKAKSPAPAPMKMIPTPAKAPKSSESPASSAPSLNGEMETP----ASAPS--GNGGGANRFAI---VGFGLMALALIA
           KSPSHAPSPAK K+PAPAP KM P+PAKAPKSS++PASS PS NG ME P    A APS   NGG ANRFAI   V  GLM  ALIA
Subjt:  ---KSPSHAPSPAKAKSPAPAPMKMIPTPAKAPKSSESPASSAPSLNGEMETP----ASAPS--GNGGGANRFAI---VGFGLMALALIA

TrEMBL top hitse value%identityAlignment
A0A0A0L0Q7 Uncharacterized protein1.2e-3563.16Show/hide
Query:  MASTALLNVLTAAILLISAAAISPAPSPMLTPESPPWKWTPD----TTPPTAE-------PPSPAWSLPATSPEFSPVPSSEAPTSPPETNPPMLS----
        MAS+ LLN+LT A LLIS AA SPAPSP  T ESP WKWTP     ++PPTAE       PPSP  S P T PE SPVP+S APTSPP  NPP LS    
Subjt:  MASTALLNVLTAAILLISAAAISPAPSPMLTPESPPWKWTPD----TTPPTAE-------PPSPAWSLPATSPEFSPVPSSEAPTSPPETNPPMLS----

Query:  -PAEKSPSHAPSPAKAKSPAPAPMKMIPTPAKAPKSSESPASSAPSLNGEMETP----ASAPS--GNGGGANRFAIVG--FGLMALALIA
         PA KSPSHAPSPAK K+PAPAP K  P PAKAPKSS++P SS PS NG+ME P    A APS  GNG GANRFAI G   GLM  A IA
Subjt:  -PAEKSPSHAPSPAKAKSPAPAPMKMIPTPAKAPKSSESPASSAPSLNGEMETP----ASAPS--GNGGGANRFAIVG--FGLMALALIA

A0A1S3CHW9 classical arabinogalactan protein 43.6e-3561.26Show/hide
Query:  MASTALLNVLTAAILLISAAAISPAPSPMLTPESPPWKWT----PDTTPPTAE-------PPSPAWSLPATSPEFSPVPSSEAPTSPPETNPPMLS----
        MAS+ LLN+LT A LLISAAA SPAPSP  + ESP WKWT    P ++PPTAE       PPSP  S PAT PE SPVPSS +PTSPP  NPP LS    
Subjt:  MASTALLNVLTAAILLISAAAISPAPSPMLTPESPPWKWT----PDTTPPTAE-------PPSPAWSLPATSPEFSPVPSSEAPTSPPETNPPMLS----

Query:  -PAEKSPSHAPSPAKAKSPAPAPMKMIPTPAKAPKSSESPASSAPSLNGEME--TPASAPS----GNGGGANRFAI---VGFGLMALALIA
         PA  SPSHAPSPAK K+PAPAP K+ P PAKAPKSS++P SS PS NG+ME  TP+ AP+    GNG GANRFAI   +  G M  A IA
Subjt:  -PAEKSPSHAPSPAKAKSPAPAPMKMIPTPAKAPKSSESPASSAPSLNGEME--TPASAPS----GNGGGANRFAI---VGFGLMALALIA

A0A5A7V3Q7 Classical arabinogalactan protein 43.6e-3561.26Show/hide
Query:  MASTALLNVLTAAILLISAAAISPAPSPMLTPESPPWKWT----PDTTPPTAE-------PPSPAWSLPATSPEFSPVPSSEAPTSPPETNPPMLS----
        MAS+ LLN+LT A LLISAAA SPAPSP  + ESP WKWT    P ++PPTAE       PPSP  S PAT PE SPVPSS +PTSPP  NPP LS    
Subjt:  MASTALLNVLTAAILLISAAAISPAPSPMLTPESPPWKWT----PDTTPPTAE-------PPSPAWSLPATSPEFSPVPSSEAPTSPPETNPPMLS----

Query:  -PAEKSPSHAPSPAKAKSPAPAPMKMIPTPAKAPKSSESPASSAPSLNGEME--TPASAPS----GNGGGANRFAI---VGFGLMALALIA
         PA  SPSHAPSPAK K+PAPAP K+ P PAKAPKSS++P SS PS NG+ME  TP+ AP+    GNG GANRFAI   +  G M  A IA
Subjt:  -PAEKSPSHAPSPAKAKSPAPAPMKMIPTPAKAPKSSESPASSAPSLNGEME--TPASAPS----GNGGGANRFAI---VGFGLMALALIA

A0A6J1E3R0 extensin-like1.0e-3763.59Show/hide
Query:  MASTALLNVLTAAILLISAAAISPAPSPMLTPESPPWKWTPDT----TPPTAEPPSPAWSLPATSPEFSPVPSSEAPTSPPETNPPMLSPAE-----KSP
        MAS A+LNV+TAA+LLISA+A SP PSP  +PESPPWKWTPDT    +PP  EPPSP+     + PE SPVPSS+ PTSPP+ NPP LSPA      KSP
Subjt:  MASTALLNVLTAAILLISAAAISPAPSPMLTPESPPWKWTPDT----TPPTAEPPSPAWSLPATSPEFSPVPSSEAPTSPPETNPPMLSPAE-----KSP

Query:  SHAPSPAKAKSPAPAPMKMIPTPAKAPKSSESPASSAPSLNGEME--TPASAPSG----NGGGANRFAI---VGFGLMALALIA
         HAPSP+K K+PAPAP KM  TPA+APKSS +P SS P+ NGEME  TP+ AP+     NGG ANRFAI   V FGLMA ALIA
Subjt:  SHAPSPAKAKSPAPAPMKMIPTPAKAPKSSESPASSAPSLNGEME--TPASAPSG----NGGGANRFAI---VGFGLMALALIA

A0A6J1JCM0 extensin-like2.5e-3663.04Show/hide
Query:  MASTALLNVLTAAILLISAAAISPAPSPMLTPESPPWKWTPDT----TPPTAEPPSPAWSLPATSPEFSPVPSSEAPTSPPETNPPMLSPAE-----KSP
        MAS A+LNV+TAA+LLISA+A SP PS   +PES PWKWTPDT    +PP  EPPSP+     + PE SPVPSS+ PTSP + NPP LSPA      KSP
Subjt:  MASTALLNVLTAAILLISAAAISPAPSPMLTPESPPWKWTPDT----TPPTAEPPSPAWSLPATSPEFSPVPSSEAPTSPPETNPPMLSPAE-----KSP

Query:  SHAPSPAKAKSPAPAPMKMIPTPAKAPKSSESPASSAPSLNGEME--TPASAPSG----NGGGANRFAI---VGFGLMALALIA
         HAPSP+K K+PAPAP KM PTPA+APKSS +PASS P+ NGEME  TP+ AP+     NGG ANRFAI   V FGLMA ALIA
Subjt:  SHAPSPAKAKSPAPAPMKMIPTPAKAPKSSESPASSAPSLNGEME--TPASAPSG----NGGGANRFAI---VGFGLMALALIA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCACCGCCCTTCTGAATGTTCTCACGGCGGCGATCCTCCTGATCTCCGCCGCCGCCATTTCACCGGCACCGTCTCCGATGCTGACCCCCGAATCGCCGCCGTG
GAAATGGACTCCTGATACCACTCCACCGACGGCGGAGCCGCCGTCCCCGGCTTGGTCGCTGCCGGCGACTTCACCGGAGTTCAGCCCCGTTCCATCATCCGAAGCACCGA
CTTCACCGCCGGAGACAAACCCACCAATGTTGTCGCCGGCGGAGAAGAGTCCTAGTCATGCACCATCGCCGGCGAAAGCCAAATCACCGGCTCCGGCTCCGATGAAAATG
ATTCCGACGCCAGCCAAGGCGCCGAAATCTTCTGAATCTCCGGCGAGTAGTGCCCCATCACTAAACGGAGAGATGGAGACGCCGGCGTCGGCGCCGTCGGGAAACGGCGG
CGGTGCAAACAGATTCGCCATTGTTGGCTTTGGCCTAATGGCTTTGGCTTTGATCGCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCACCGCCCTTCTGAATGTTCTCACGGCGGCGATCCTCCTGATCTCCGCCGCCGCCATTTCACCGGCACCGTCTCCGATGCTGACCCCCGAATCGCCGCCGTG
GAAATGGACTCCTGATACCACTCCACCGACGGCGGAGCCGCCGTCCCCGGCTTGGTCGCTGCCGGCGACTTCACCGGAGTTCAGCCCCGTTCCATCATCCGAAGCACCGA
CTTCACCGCCGGAGACAAACCCACCAATGTTGTCGCCGGCGGAGAAGAGTCCTAGTCATGCACCATCGCCGGCGAAAGCCAAATCACCGGCTCCGGCTCCGATGAAAATG
ATTCCGACGCCAGCCAAGGCGCCGAAATCTTCTGAATCTCCGGCGAGTAGTGCCCCATCACTAAACGGAGAGATGGAGACGCCGGCGTCGGCGCCGTCGGGAAACGGCGG
CGGTGCAAACAGATTCGCCATTGTTGGCTTTGGCCTAATGGCTTTGGCTTTGATCGCATAA
Protein sequenceShow/hide protein sequence
MASTALLNVLTAAILLISAAAISPAPSPMLTPESPPWKWTPDTTPPTAEPPSPAWSLPATSPEFSPVPSSEAPTSPPETNPPMLSPAEKSPSHAPSPAKAKSPAPAPMKM
IPTPAKAPKSSESPASSAPSLNGEMETPASAPSGNGGGANRFAIVGFGLMALALIA