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Sed0020618 (gene) of Chayote v1 genome

Gene IDSed0020618
OrganismSechium edule (Chayote v1)
Descriptionprotein RADIALIS-like 1
Genome locationLG05:35648117..35650058
RNA-Seq ExpressionSed0020618
SyntenySed0020618
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036150.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa]4.8e-1663.89Show/hide
Query:  TSHGCGVWSAKENKAFEKALAMYDKDTADRWLNVAKAIGGNTEEEVKH-----------IESGKVPFLYRTS
        +SHG G W+ K+NKAFEKALA+YD+DT DRWLNVAKA+GG T EEVK            IESG+VPF YRTS
Subjt:  TSHGCGVWSAKENKAFEKALAMYDKDTADRWLNVAKAIGGNTEEEVKH-----------IESGKVPFLYRTS

KAA0036170.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa]2.7e-1972.22Show/hide
Query:  TSHGCGVWSAKENKAFEKALAMYDKDTADRWLNVAKAIGGNTEEE-----------VKHIESGKVPFLYRTS
        ++HG GVW+AK+NKAFE+ALAMYDKDT DRWLNVAKAIGG TEEE           VKHIESGKVPF YRTS
Subjt:  TSHGCGVWSAKENKAFEKALAMYDKDTADRWLNVAKAIGGNTEEE-----------VKHIESGKVPFLYRTS

XP_004151116.1 protein RADIALIS-like 1 [Cucumis sativus]8.0e-1970.83Show/hide
Query:  TSHGCGVWSAKENKAFEKALAMYDKDTADRWLNVAKAIGGNTEEE-----------VKHIESGKVPFLYRTS
        ++HG GVW+AK+NKAFE+ALAMYDKDT DRWLNVAKAIGG TEEE           VKHIESGKVPF YR+S
Subjt:  TSHGCGVWSAKENKAFEKALAMYDKDTADRWLNVAKAIGGNTEEE-----------VKHIESGKVPFLYRTS

XP_008447025.1 PREDICTED: protein RADIALIS-like 1 [Cucumis melo]9.4e-2073.61Show/hide
Query:  TSHGCGVWSAKENKAFEKALAMYDKDTADRWLNVAKAIGGNTEEE-----------VKHIESGKVPFLYRTS
        ++HG GVW+AK+NKAFEKALAMYDKDT DRWLNVAKAIGG TEEE           VKHIESGKVPF YRTS
Subjt:  TSHGCGVWSAKENKAFEKALAMYDKDTADRWLNVAKAIGGNTEEE-----------VKHIESGKVPFLYRTS

XP_022952073.1 protein RADIALIS-like 1 [Cucurbita moschata]1.1e-1768.06Show/hide
Query:  TSHGCGVWSAKENKAFEKALAMYDKDTADRWLNVAKAIGGNTEEE-----------VKHIESGKVPFLYRTS
        ++HG GVW+AK+NKAFE+ALAMYD+D  DRWLNVAKAIGG TEEE           VKHIESGKVPF YR+S
Subjt:  TSHGCGVWSAKENKAFEKALAMYDKDTADRWLNVAKAIGGNTEEE-----------VKHIESGKVPFLYRTS

TrEMBL top hitse value%identityAlignment
A0A0A0K344 SANT domain-containing protein3.8e-1970.83Show/hide
Query:  TSHGCGVWSAKENKAFEKALAMYDKDTADRWLNVAKAIGGNTEEE-----------VKHIESGKVPFLYRTS
        ++HG GVW+AK+NKAFE+ALAMYDKDT DRWLNVAKAIGG TEEE           VKHIESGKVPF YR+S
Subjt:  TSHGCGVWSAKENKAFEKALAMYDKDTADRWLNVAKAIGGNTEEE-----------VKHIESGKVPFLYRTS

A0A1S3BGF6 protein RADIALIS-like 14.5e-2073.61Show/hide
Query:  TSHGCGVWSAKENKAFEKALAMYDKDTADRWLNVAKAIGGNTEEE-----------VKHIESGKVPFLYRTS
        ++HG GVW+AK+NKAFEKALAMYDKDT DRWLNVAKAIGG TEEE           VKHIESGKVPF YRTS
Subjt:  TSHGCGVWSAKENKAFEKALAMYDKDTADRWLNVAKAIGGNTEEE-----------VKHIESGKVPFLYRTS

A0A5A7SYM4 Protein RADIALIS-like 11.3e-1972.22Show/hide
Query:  TSHGCGVWSAKENKAFEKALAMYDKDTADRWLNVAKAIGGNTEEE-----------VKHIESGKVPFLYRTS
        ++HG GVW+AK+NKAFE+ALAMYDKDT DRWLNVAKAIGG TEEE           VKHIESGKVPF YRTS
Subjt:  TSHGCGVWSAKENKAFEKALAMYDKDTADRWLNVAKAIGGNTEEE-----------VKHIESGKVPFLYRTS

A0A6J1GJG0 protein RADIALIS-like 15.6e-1868.06Show/hide
Query:  TSHGCGVWSAKENKAFEKALAMYDKDTADRWLNVAKAIGGNTEEE-----------VKHIESGKVPFLYRTS
        ++HG GVW+AK+NKAFE+ALAMYD+D  DRWLNVAKAIGG TEEE           VKHIESGKVPF YR+S
Subjt:  TSHGCGVWSAKENKAFEKALAMYDKDTADRWLNVAKAIGGNTEEE-----------VKHIESGKVPFLYRTS

A0A6J1IA78 protein RADIALIS-like 15.6e-1868.06Show/hide
Query:  TSHGCGVWSAKENKAFEKALAMYDKDTADRWLNVAKAIGGNTEEE-----------VKHIESGKVPFLYRTS
        ++HG GVW+AK+NKAFE+ALAMYD+D  DRWLNVAKAIGG TEEE           VKHIESGKVPF YR+S
Subjt:  TSHGCGVWSAKENKAFEKALAMYDKDTADRWLNVAKAIGGNTEEE-----------VKHIESGKVPFLYRTS

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 14.0e-1354.79Show/hide
Query:  TSHGCGVWSAKENKAFEKALAMYDKDTADRWLNVAKAIGGNTEEEVKH-----------IESGKVPF-LYRTS
        +S   G W+AK+NKAFE+ALA YD+DT +RW NVAK +GG T EEVK            IE+G VPF  YRTS
Subjt:  TSHGCGVWSAKENKAFEKALAMYDKDTADRWLNVAKAIGGNTEEEVKH-----------IESGKVPF-LYRTS

Q1A173 Protein RADIALIS-like 68.3e-1155.93Show/hide
Query:  WSAKENKAFEKALAMYDKDTADRWLNVAKAIGGNTEEEVK-----------HIESGKVP
        W+  +NK FE+ALA+YDKDT DRW NVAKA+GG T EEVK           +IE+G+VP
Subjt:  WSAKENKAFEKALAMYDKDTADRWLNVAKAIGGNTEEEVK-----------HIESGKVP

Q58FS3 Transcription factor RADIALIS1.6e-1463.64Show/hide
Query:  WSAKENKAFEKALAMYDKDTADRWLNVAKAIGGNTEEEV-----------KHIESGKVPF-LYRTS
        WSAKENKAFE+ALA+YDKDT DRW NVA+A+ G T EEV           K+IESGKVPF  YRT+
Subjt:  WSAKENKAFEKALAMYDKDTADRWLNVAKAIGGNTEEEV-----------KHIESGKVPF-LYRTS

Q6NNN0 Protein RADIALIS-like 39.2e-1052.54Show/hide
Query:  WSAKENKAFEKALAMYDKDTADRWLNVAKAIGGNTEEEVKH-----------IESGKVP
        W+ KENK FE+ALA YD+DT DRW NVA+A+GG + EEV+            IESG+ P
Subjt:  WSAKENKAFEKALAMYDKDTADRWLNVAKAIGGNTEEEVKH-----------IESGKVP

Q9SIJ5 Protein RADIALIS-like 23.0e-1353.73Show/hide
Query:  TSHGCGVWSAKENKAFEKALAMYDKDTADRWLNVAKAIGGNTEEEVKH-----------IESGKVPF
        +S+G G W+ K+NKAFE+ALA+YD+DT DRW NVA+A+GG T EE K            IE+G VPF
Subjt:  TSHGCGVWSAKENKAFEKALAMYDKDTADRWLNVAKAIGGNTEEEVKH-----------IESGKVPF

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 56.5e-1167.5Show/hide
Query:  WSAKENKAFEKALAMYDKDTADRWLNVAKAIGGNTEEEVK
        W++K+NK FE+ALA+YDKDT DRW NVAKA+G  + EEVK
Subjt:  WSAKENKAFEKALAMYDKDTADRWLNVAKAIGGNTEEEVK

AT1G75250.1 RAD-like 65.9e-1255.93Show/hide
Query:  WSAKENKAFEKALAMYDKDTADRWLNVAKAIGGNTEEEVK-----------HIESGKVP
        W+  +NK FE+ALA+YDKDT DRW NVAKA+GG T EEVK           +IE+G+VP
Subjt:  WSAKENKAFEKALAMYDKDTADRWLNVAKAIGGNTEEEVK-----------HIESGKVP

AT1G75250.2 RAD-like 65.9e-1255.93Show/hide
Query:  WSAKENKAFEKALAMYDKDTADRWLNVAKAIGGNTEEEVK-----------HIESGKVP
        W+  +NK FE+ALA+YDKDT DRW NVAKA+GG T EEVK           +IE+G+VP
Subjt:  WSAKENKAFEKALAMYDKDTADRWLNVAKAIGGNTEEEVK-----------HIESGKVP

AT2G21650.1 Homeodomain-like superfamily protein2.2e-1453.73Show/hide
Query:  TSHGCGVWSAKENKAFEKALAMYDKDTADRWLNVAKAIGGNTEEEVKH-----------IESGKVPF
        +S+G G W+ K+NKAFE+ALA+YD+DT DRW NVA+A+GG T EE K            IE+G VPF
Subjt:  TSHGCGVWSAKENKAFEKALAMYDKDTADRWLNVAKAIGGNTEEEVKH-----------IESGKVPF

AT4G39250.1 RAD-like 12.8e-1454.79Show/hide
Query:  TSHGCGVWSAKENKAFEKALAMYDKDTADRWLNVAKAIGGNTEEEVKH-----------IESGKVPF-LYRTS
        +S   G W+AK+NKAFE+ALA YD+DT +RW NVAK +GG T EEVK            IE+G VPF  YRTS
Subjt:  TSHGCGVWSAKENKAFEKALAMYDKDTADRWLNVAKAIGGNTEEEVKH-----------IESGKVPF-LYRTS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCCTTCTTCGTGGACAACGAGCTATATTTGTAGACTTGGCATCAGGATCAGGAAAGTTTGATGTCGTCATGCCATGGCTTTCTGCCCCAATTTGGTGTAGGACTGT
GGACAATAATTGTCACACTTCTCATGGCTGTGGGGTTTGGAGTGCAAAGGAAAACAAGGCATTTGAAAAGGCTTTGGCAATGTATGATAAAGACACAGCTGATCGATGGC
TGAATGTTGCAAAGGCCATTGGTGGAAACACTGAAGAGGAAGTTAAACATATTGAGTCTGGCAAAGTTCCCTTTCTCTATCGAACCTCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACCCTTCTTCGTGGACAACGAGCTATATTTGTAGACTTGGCATCAGGATCAGGAAAGTTTGATGTCGTCATGCCATGGCTTTCTGCCCCAATTTGGTGTAGGACTGT
GGACAATAATTGTCACACTTCTCATGGCTGTGGGGTTTGGAGTGCAAAGGAAAACAAGGCATTTGAAAAGGCTTTGGCAATGTATGATAAAGACACAGCTGATCGATGGC
TGAATGTTGCAAAGGCCATTGGTGGAAACACTGAAGAGGAAGTTAAACATATTGAGTCTGGCAAAGTTCCCTTTCTCTATCGAACCTCGTGA
Protein sequenceShow/hide protein sequence
MTLLRGQRAIFVDLASGSGKFDVVMPWLSAPIWCRTVDNNCHTSHGCGVWSAKENKAFEKALAMYDKDTADRWLNVAKAIGGNTEEEVKHIESGKVPFLYRTS