CuGenDBv2

Gene ID	Sed0020704
Organism	Sechium edule (Chayote v1)
Description	DNA-directed RNA polymerase I subunit rpa49-like
Genome location	LG04:6625897..6628115
RNA-Seq Expression	Sed0020704
Synteny	Sed0020704
Gene Ontology terms	GO:0001188 - RNA polymerase I preinitiation complex assembly (biological process) GO:0006362 - transcription elongation from RNA polymerase I promoter (biological process) GO:0042790 - nucleolar large rRNA transcription by RNA polymerase I (biological process) GO:0005736 - RNA polymerase I complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR009668 - RNA polymerase I associated factor, A49-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7025877.1 DNA-directed RNA polymerase I subunit rpa49 [Cucurbita argyrosperma subsp. argyrosperma]

2.1e-173

80.4

Show/hide

Query:  MNAKIQVLSNQPDKTPPLVGYFPS-----------AVEEQHSVRARVYRHKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYTLGVFDRATKSL
        +N KIQVLSN P+K PPLVGYFPS            VEEQ+SVRA+VYRHK KPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHC+Y LGV D+AT+SL
Subjt:  MNAKIQVLSNQPDKTPPLVGYFPS-----------AVEEQHSVRARVYRHKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYTLGVFDRATKSL

Query:  KIVPV---KIFRLDPKVRGSDVSEKESPSVANDELSVQERADRKRKLIDLYGTKRSIKQARKLHSLMQEDDPETKKDLARKMKN-VVNKEALEGTNAQIA
        KIVP+    IFRLDPKVRGSDV E ESPSVANDELSVQE+ADR R+L +LYGTK+SIKQA+KL SL QEDDPETKKDL  KMKN VVNKEALE +NAQI+
Subjt:  KIVPV---KIFRLDPKVRGSDVSEKESPSVANDELSVQERADRKRKLIDLYGTKRSIKQARKLHSLMQEDDPETKKDLARKMKN-VVNKEALEGTNAQIA

Query:  RNIPMYNASATTPQEAYPLDKIILMGEWSFLEDLYFLLQAESEVSANYPTFVRNRIYKLQDIQDEEEKKKFCCIFSYITHLIKYKDQHSMDGVSSAKDHK
        RNIP YNASATTPQEAYPLDKIIL GEW FLEDLYFLLQAESE+SANYP+FVRNRIYKLQDIQDEEEKKK CCI+SYITHL+KYKDQHSMDGVSS K HK
Subjt:  RNIPMYNASATTPQEAYPLDKIILMGEWSFLEDLYFLLQAESEVSANYPTFVRNRIYKLQDIQDEEEKKKFCCIFSYITHLIKYKDQHSMDGVSSAKDHK

Query:  IPSMLGQKFSSMFSTTESSRLSSEKINLLISHVLVLTLFVDEFRSDLSDIAKDLRTCPLTLRQHFDNLGCKFIGKNNLSLATLPIPLQFPKLKKKLRR
        IPSML QKFSSMFSTTES RLS+EK +LLISHVLVL LF DEF SD SDIA+DLRT P TLR H+DNLGCKFI KNNLSL TLP+PLQFP+L++K RR
Subjt:  IPSMLGQKFSSMFSTTESSRLSSEKINLLISHVLVLTLFVDEFRSDLSDIAKDLRTCPLTLRQHFDNLGCKFIGKNNLSLATLPIPLQFPKLKKKLRR

XP_022151610.1 DNA-directed RNA polymerase I subunit rpa49 [Momordica charantia]

2.0e-171

80.15

Show/hide

Query:  MNAKIQVLSNQPDKTPPLVGYFPS-----------AVEEQHSVRARVYRHKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYTLGVFDRATKSL
        +NA IQVLSN P+KTPPLVGYFPS           AV+EQ S+RARVYR+KNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTY LGV D+AT+SL
Subjt:  MNAKIQVLSNQPDKTPPLVGYFPS-----------AVEEQHSVRARVYRHKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYTLGVFDRATKSL

Query:  KIVPV---KIFRLDPKVRGSDVSEKESPSVANDELSVQERADRKRKLIDLYGTKRSIKQARKLHSLMQEDDPETKKDLARKMKN-VVNKEALEGTNAQIA
        KIVP+    IFRLDPKVRGSDVSEKESP+V +DELSVQE+ADR R+L +LYGTKRSIKQA+KLHSL Q DD +T+KDL  KMKN VVNKEALEGTNA+IA
Subjt:  KIVPV---KIFRLDPKVRGSDVSEKESPSVANDELSVQERADRKRKLIDLYGTKRSIKQARKLHSLMQEDDPETKKDLARKMKN-VVNKEALEGTNAQIA

Query:  RNIPMYNASATTPQEAYPLDKIILMGEWSFLEDLYFLLQAESEVSANYPTFVRNRIYKLQDIQDEEEKKKFCCIFSYITHLIKYKDQHSMDGVSSAKDHK
        RNIP YNASATTPQEAYPLDKIILMGEWS+LED+Y LL+AE+E+SANYP+FVRNRIYKLQDIQDEEEKKK CCIFSYITHLIK+KDQ+SMDGVSSAK HK
Subjt:  RNIPMYNASATTPQEAYPLDKIILMGEWSFLEDLYFLLQAESEVSANYPTFVRNRIYKLQDIQDEEEKKKFCCIFSYITHLIKYKDQHSMDGVSSAKDHK

Query:  IPSMLGQKFSSMFSTTESSRLSSEKINLLISHVLVLTLFVDEFRSDLSDIAKDLRTCPLTLRQHFDNLGCKFIGKNNLSLATLPIPLQFPKLKKKLRR
        IPSML QKFSSMFS  ES RLS EK +LLISHVLVLTLF DEF SD SDIAKDLRT P TLR HFDNLGCKFI KNNLSL TLP+PL+FP+L  K RR
Subjt:  IPSMLGQKFSSMFSTTESSRLSSEKINLLISHVLVLTLFVDEFRSDLSDIAKDLRTCPLTLRQHFDNLGCKFIGKNNLSLATLPIPLQFPKLKKKLRR

XP_022964095.1 DNA-directed RNA polymerase I subunit rpa49-like [Cucurbita moschata]

2.8e-173

80.65

Show/hide

Query:  MNAKIQVLSNQPDKTPPLVGYFPS-----------AVEEQHSVRARVYRHKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYTLGVFDRATKSL
        +N KIQVLSN P+K PPLVGYFPS            VEEQ+SVRA+VYRHK KPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHC+Y LGV D+AT+SL
Subjt:  MNAKIQVLSNQPDKTPPLVGYFPS-----------AVEEQHSVRARVYRHKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYTLGVFDRATKSL

Query:  KIVPV---KIFRLDPKVRGSDVSEKESPSVANDELSVQERADRKRKLIDLYGTKRSIKQARKLHSLMQEDDPETKKDLARKMKN-VVNKEALEGTNAQIA
        KIVP+    IFRLDPKVRGSDV E ESPSVANDELSVQE+ADR R+L +LYGTK+SIKQA+KL SL QEDDPETKKDL  KMKN VVNKEALE +NAQI+
Subjt:  KIVPV---KIFRLDPKVRGSDVSEKESPSVANDELSVQERADRKRKLIDLYGTKRSIKQARKLHSLMQEDDPETKKDLARKMKN-VVNKEALEGTNAQIA

Query:  RNIPMYNASATTPQEAYPLDKIILMGEWSFLEDLYFLLQAESEVSANYPTFVRNRIYKLQDIQDEEEKKKFCCIFSYITHLIKYKDQHSMDGVSSAKDHK
        RNIP YNASATTPQEAYPLDKIIL GEW FLEDLYFLLQAESE+SANYP+FVRNRIYKLQDIQDEEEKKK CCI+SYITHLIKYKDQHSMDGVSS K HK
Subjt:  RNIPMYNASATTPQEAYPLDKIILMGEWSFLEDLYFLLQAESEVSANYPTFVRNRIYKLQDIQDEEEKKKFCCIFSYITHLIKYKDQHSMDGVSSAKDHK

Query:  IPSMLGQKFSSMFSTTESSRLSSEKINLLISHVLVLTLFVDEFRSDLSDIAKDLRTCPLTLRQHFDNLGCKFIGKNNLSLATLPIPLQFPKLKKKLRR
        IPSML QKFSSMFSTTES RLS+EK +LLISHVLVL LF DEF SD SDIA+DLRT P TLR H+DNLGCKFI KNNLSL TLP+PLQFP+L++K RR
Subjt:  IPSMLGQKFSSMFSTTESSRLSSEKINLLISHVLVLTLFVDEFRSDLSDIAKDLRTCPLTLRQHFDNLGCKFIGKNNLSLATLPIPLQFPKLKKKLRR

XP_023000003.1 DNA-directed RNA polymerase I subunit rpa49-like [Cucurbita maxima]

1.8e-172

80.15

Show/hide

Query:  MNAKIQVLSNQPDKTPPLVGYFPS-----------AVEEQHSVRARVYRHKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYTLGVFDRATKSL
        +N KIQVLSN P+K PPLVGYFPS           AVEEQ+SVRA+VYRHK KPNRMQL+VSPTGSNVDFVGTNYLGEATAGKQHC+Y LGV D+AT+SL
Subjt:  MNAKIQVLSNQPDKTPPLVGYFPS-----------AVEEQHSVRARVYRHKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYTLGVFDRATKSL

Query:  KIVPV---KIFRLDPKVRGSDVSEKESPSVANDELSVQERADRKRKLIDLYGTKRSIKQARKLHSLMQEDDPETKKDLARKMKN-VVNKEALEGTNAQIA
        KIVP+    IFRLDPKV GSDV E ESPSVANDELSVQE+ADR R+L +LYGTK+SIKQA+KL SL QEDDPETKKDL  KMKN VVNKEALE +NAQI+
Subjt:  KIVPV---KIFRLDPKVRGSDVSEKESPSVANDELSVQERADRKRKLIDLYGTKRSIKQARKLHSLMQEDDPETKKDLARKMKN-VVNKEALEGTNAQIA

Query:  RNIPMYNASATTPQEAYPLDKIILMGEWSFLEDLYFLLQAESEVSANYPTFVRNRIYKLQDIQDEEEKKKFCCIFSYITHLIKYKDQHSMDGVSSAKDHK
        RNIP YNASATTPQEAYPLDKIIL GEW FLEDLYFLLQAESE+SANYP+FVRNRIYKLQDIQDEEEKKK CCI+SYITHLIKYKDQHSMDGVSS + HK
Subjt:  RNIPMYNASATTPQEAYPLDKIILMGEWSFLEDLYFLLQAESEVSANYPTFVRNRIYKLQDIQDEEEKKKFCCIFSYITHLIKYKDQHSMDGVSSAKDHK

Query:  IPSMLGQKFSSMFSTTESSRLSSEKINLLISHVLVLTLFVDEFRSDLSDIAKDLRTCPLTLRQHFDNLGCKFIGKNNLSLATLPIPLQFPKLKKKLRR
        IPSML QKFSSMFSTTES RLS+EK +LLISHVLVLTLF DEF SD SDIA+DLRT P TLR H+DNLGCKFI KNNLS  TLP+PLQFP+L++K RR
Subjt:  IPSMLGQKFSSMFSTTESSRLSSEKINLLISHVLVLTLFVDEFRSDLSDIAKDLRTCPLTLRQHFDNLGCKFIGKNNLSLATLPIPLQFPKLKKKLRR

XP_023514670.1 DNA-directed RNA polymerase I subunit rpa49-like [Cucurbita pepo subsp. pepo]

4.7e-173

80.65

Show/hide

Query:  MNAKIQVLSNQPDKTPPLVGYFPS-----------AVEEQHSVRARVYRHKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYTLGVFDRATKSL
        +N KIQVLSN P+K PPLVGYFPS           AVEEQ+SVRA+VYRHK KPNRMQLVVSPTG NVDFVGTNYLGEATAGKQHC+Y LGV D+AT+SL
Subjt:  MNAKIQVLSNQPDKTPPLVGYFPS-----------AVEEQHSVRARVYRHKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYTLGVFDRATKSL

Query:  KIVPV---KIFRLDPKVRGSDVSEKESPSVANDELSVQERADRKRKLIDLYGTKRSIKQARKLHSLMQEDDPETKKDLARKMKN-VVNKEALEGTNAQIA
        KIVP+    IFRLDPKVRGSDV E ESPSVANDELSVQE+ADR R+L +LYGTK+SIKQA+KL SL QEDDPETKKDL  KMKN VVNKEALE +NAQI+
Subjt:  KIVPV---KIFRLDPKVRGSDVSEKESPSVANDELSVQERADRKRKLIDLYGTKRSIKQARKLHSLMQEDDPETKKDLARKMKN-VVNKEALEGTNAQIA

Query:  RNIPMYNASATTPQEAYPLDKIILMGEWSFLEDLYFLLQAESEVSANYPTFVRNRIYKLQDIQDEEEKKKFCCIFSYITHLIKYKDQHSMDGVSSAKDHK
        RNIP YNASATTPQEAYPLDKIIL GEW FLEDLYFLLQAESE+SANYP FVRNRIYKLQDIQDEEEKKK CCI+SYITHLIKYKDQHSMDGVSS K HK
Subjt:  RNIPMYNASATTPQEAYPLDKIILMGEWSFLEDLYFLLQAESEVSANYPTFVRNRIYKLQDIQDEEEKKKFCCIFSYITHLIKYKDQHSMDGVSSAKDHK

Query:  IPSMLGQKFSSMFSTTESSRLSSEKINLLISHVLVLTLFVDEFRSDLSDIAKDLRTCPLTLRQHFDNLGCKFIGKNNLSLATLPIPLQFPKLKKKLRR
        IPSML QKFSSMFSTTES RLS+EK +LLISHVLVL LF DEF SD SDIA+DLRT P TLR H+DNLGCKFI KNNLSL TLP+PLQFP+L++K RR
Subjt:  IPSMLGQKFSSMFSTTESSRLSSEKINLLISHVLVLTLFVDEFRSDLSDIAKDLRTCPLTLRQHFDNLGCKFIGKNNLSLATLPIPLQFPKLKKKLRR

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CH93 DNA-directed RNA polymerase I subunit rpa49

1.7e-168

78.73

Show/hide

Query:  MNAKIQVLSNQPDKTPPLVGYFPSAV--------EEQHSVRARVYRHKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYTLGVFDRATKSLKIV
        MNAKIQVLSNQP K PP+VGYFPS          E+ HSVRARVY+H+NKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTY LGV D+AT+SLKIV
Subjt:  MNAKIQVLSNQPDKTPPLVGYFPSAV--------EEQHSVRARVYRHKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYTLGVFDRATKSLKIV

Query:  PV---KIFRLDPKVRGSDVSEKESPSVANDELSVQERADRKRKLIDLYGTKRSIKQARKLHSLMQEDDPETKKDLARKMKN-VVNKEALEGTNAQIARNI
        P+    I RLDPKVRGSDVSE ESPSVAN+ELS+QE+A+R R+L  LYGTK+S KQA+KLH+L QEDDPETK DL  +MKN VVNKEALEGT A+IARNI
Subjt:  PV---KIFRLDPKVRGSDVSEKESPSVANDELSVQERADRKRKLIDLYGTKRSIKQARKLHSLMQEDDPETKKDLARKMKN-VVNKEALEGTNAQIARNI

Query:  PMYNASATTPQEAYPLDKIILMGEWSFLEDLYFLLQAESEVSANYPTFVRNRIYKLQDIQDEEEKKKFCCIFSYITHLIKYKDQHSMDGVSSAKDHKIPS
        P YNASATTPQE YPLDKIIL GEWSFLEDLYF L+  +E++A YP+FVRNRIYKLQDIQDEEEKKK CCIFSYITHLIKYKDQHSM  VSSAK HKIPS
Subjt:  PMYNASATTPQEAYPLDKIILMGEWSFLEDLYFLLQAESEVSANYPTFVRNRIYKLQDIQDEEEKKKFCCIFSYITHLIKYKDQHSMDGVSSAKDHKIPS

Query:  MLGQKFSSMFSTTESSRLSSEKINLLISHVLVLTLFVDEFRSDLSDIAKDLRTCPLTLRQHFDNLGCKFIGKNNLSLATLPIPLQFPKLKKKLRR
        ML QKFSSMF T ES RLS++KINLLISHVLVLTLF DEF SD +DIAKDLRT P  LR HFDNLGCKFI KNNLSLATLP+PLQFP+L++K RR
Subjt:  MLGQKFSSMFSTTESSRLSSEKINLLISHVLVLTLFVDEFRSDLSDIAKDLRTCPLTLRQHFDNLGCKFIGKNNLSLATLPIPLQFPKLKKKLRR

A0A5D3BXN3 DNA-directed RNA polymerase I subunit rpa49

1.7e-168

78.73

Show/hide

Query:  MNAKIQVLSNQPDKTPPLVGYFPSAV--------EEQHSVRARVYRHKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYTLGVFDRATKSLKIV
        MNAKIQVLSNQP K PP+VGYFPS          E+ HSVRARVY+H+NKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTY LGV D+AT+SLKIV
Subjt:  MNAKIQVLSNQPDKTPPLVGYFPSAV--------EEQHSVRARVYRHKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYTLGVFDRATKSLKIV

Query:  PV---KIFRLDPKVRGSDVSEKESPSVANDELSVQERADRKRKLIDLYGTKRSIKQARKLHSLMQEDDPETKKDLARKMKN-VVNKEALEGTNAQIARNI
        P+    I RLDPKVRGSDVSE ESPSVAN+ELS+QE+A+R R+L  LYGTK+S KQA+KLH+L QEDDPETK DL  +MKN VVNKEALEGT A+IARNI
Subjt:  PV---KIFRLDPKVRGSDVSEKESPSVANDELSVQERADRKRKLIDLYGTKRSIKQARKLHSLMQEDDPETKKDLARKMKN-VVNKEALEGTNAQIARNI

Query:  PMYNASATTPQEAYPLDKIILMGEWSFLEDLYFLLQAESEVSANYPTFVRNRIYKLQDIQDEEEKKKFCCIFSYITHLIKYKDQHSMDGVSSAKDHKIPS
        P YNASATTPQE YPLDKIIL GEWSFLEDLYF L+  +E++A YP+FVRNRIYKLQDIQDEEEKKK CCIFSYITHLIKYKDQHSM  VSSAK HKIPS
Subjt:  PMYNASATTPQEAYPLDKIILMGEWSFLEDLYFLLQAESEVSANYPTFVRNRIYKLQDIQDEEEKKKFCCIFSYITHLIKYKDQHSMDGVSSAKDHKIPS

Query:  MLGQKFSSMFSTTESSRLSSEKINLLISHVLVLTLFVDEFRSDLSDIAKDLRTCPLTLRQHFDNLGCKFIGKNNLSLATLPIPLQFPKLKKKLRR
        ML QKFSSMF T ES RLS++KINLLISHVLVLTLF DEF SD +DIAKDLRT P  LR HFDNLGCKFI KNNLSLATLP+PLQFP+L++K RR
Subjt:  MLGQKFSSMFSTTESSRLSSEKINLLISHVLVLTLFVDEFRSDLSDIAKDLRTCPLTLRQHFDNLGCKFIGKNNLSLATLPIPLQFPKLKKKLRR

A0A6J1DBN9 DNA-directed RNA polymerase I subunit rpa49

9.7e-172

80.15

Show/hide

Query:  MNAKIQVLSNQPDKTPPLVGYFPS-----------AVEEQHSVRARVYRHKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYTLGVFDRATKSL
        +NA IQVLSN P+KTPPLVGYFPS           AV+EQ S+RARVYR+KNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTY LGV D+AT+SL
Subjt:  MNAKIQVLSNQPDKTPPLVGYFPS-----------AVEEQHSVRARVYRHKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYTLGVFDRATKSL

Query:  KIVPV---KIFRLDPKVRGSDVSEKESPSVANDELSVQERADRKRKLIDLYGTKRSIKQARKLHSLMQEDDPETKKDLARKMKN-VVNKEALEGTNAQIA
        KIVP+    IFRLDPKVRGSDVSEKESP+V +DELSVQE+ADR R+L +LYGTKRSIKQA+KLHSL Q DD +T+KDL  KMKN VVNKEALEGTNA+IA
Subjt:  KIVPV---KIFRLDPKVRGSDVSEKESPSVANDELSVQERADRKRKLIDLYGTKRSIKQARKLHSLMQEDDPETKKDLARKMKN-VVNKEALEGTNAQIA

Query:  RNIPMYNASATTPQEAYPLDKIILMGEWSFLEDLYFLLQAESEVSANYPTFVRNRIYKLQDIQDEEEKKKFCCIFSYITHLIKYKDQHSMDGVSSAKDHK
        RNIP YNASATTPQEAYPLDKIILMGEWS+LED+Y LL+AE+E+SANYP+FVRNRIYKLQDIQDEEEKKK CCIFSYITHLIK+KDQ+SMDGVSSAK HK
Subjt:  RNIPMYNASATTPQEAYPLDKIILMGEWSFLEDLYFLLQAESEVSANYPTFVRNRIYKLQDIQDEEEKKKFCCIFSYITHLIKYKDQHSMDGVSSAKDHK

Query:  IPSMLGQKFSSMFSTTESSRLSSEKINLLISHVLVLTLFVDEFRSDLSDIAKDLRTCPLTLRQHFDNLGCKFIGKNNLSLATLPIPLQFPKLKKKLRR
        IPSML QKFSSMFS  ES RLS EK +LLISHVLVLTLF DEF SD SDIAKDLRT P TLR HFDNLGCKFI KNNLSL TLP+PL+FP+L  K RR
Subjt:  IPSMLGQKFSSMFSTTESSRLSSEKINLLISHVLVLTLFVDEFRSDLSDIAKDLRTCPLTLRQHFDNLGCKFIGKNNLSLATLPIPLQFPKLKKKLRR

A0A6J1HM51 DNA-directed RNA polymerase I subunit rpa49-like

1.3e-173

80.65

Show/hide

Query:  MNAKIQVLSNQPDKTPPLVGYFPS-----------AVEEQHSVRARVYRHKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYTLGVFDRATKSL
        +N KIQVLSN P+K PPLVGYFPS            VEEQ+SVRA+VYRHK KPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHC+Y LGV D+AT+SL
Subjt:  MNAKIQVLSNQPDKTPPLVGYFPS-----------AVEEQHSVRARVYRHKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYTLGVFDRATKSL

Query:  KIVPV---KIFRLDPKVRGSDVSEKESPSVANDELSVQERADRKRKLIDLYGTKRSIKQARKLHSLMQEDDPETKKDLARKMKN-VVNKEALEGTNAQIA
        KIVP+    IFRLDPKVRGSDV E ESPSVANDELSVQE+ADR R+L +LYGTK+SIKQA+KL SL QEDDPETKKDL  KMKN VVNKEALE +NAQI+
Subjt:  KIVPV---KIFRLDPKVRGSDVSEKESPSVANDELSVQERADRKRKLIDLYGTKRSIKQARKLHSLMQEDDPETKKDLARKMKN-VVNKEALEGTNAQIA

Query:  RNIPMYNASATTPQEAYPLDKIILMGEWSFLEDLYFLLQAESEVSANYPTFVRNRIYKLQDIQDEEEKKKFCCIFSYITHLIKYKDQHSMDGVSSAKDHK
        RNIP YNASATTPQEAYPLDKIIL GEW FLEDLYFLLQAESE+SANYP+FVRNRIYKLQDIQDEEEKKK CCI+SYITHLIKYKDQHSMDGVSS K HK
Subjt:  RNIPMYNASATTPQEAYPLDKIILMGEWSFLEDLYFLLQAESEVSANYPTFVRNRIYKLQDIQDEEEKKKFCCIFSYITHLIKYKDQHSMDGVSSAKDHK

Query:  IPSMLGQKFSSMFSTTESSRLSSEKINLLISHVLVLTLFVDEFRSDLSDIAKDLRTCPLTLRQHFDNLGCKFIGKNNLSLATLPIPLQFPKLKKKLRR
        IPSML QKFSSMFSTTES RLS+EK +LLISHVLVL LF DEF SD SDIA+DLRT P TLR H+DNLGCKFI KNNLSL TLP+PLQFP+L++K RR
Subjt:  IPSMLGQKFSSMFSTTESSRLSSEKINLLISHVLVLTLFVDEFRSDLSDIAKDLRTCPLTLRQHFDNLGCKFIGKNNLSLATLPIPLQFPKLKKKLRR

A0A6J1KIP6 DNA-directed RNA polymerase I subunit rpa49-like

8.7e-173

80.15

Show/hide

Query:  MNAKIQVLSNQPDKTPPLVGYFPS-----------AVEEQHSVRARVYRHKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYTLGVFDRATKSL
        +N KIQVLSN P+K PPLVGYFPS           AVEEQ+SVRA+VYRHK KPNRMQL+VSPTGSNVDFVGTNYLGEATAGKQHC+Y LGV D+AT+SL
Subjt:  MNAKIQVLSNQPDKTPPLVGYFPS-----------AVEEQHSVRARVYRHKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYTLGVFDRATKSL

Query:  KIVPV---KIFRLDPKVRGSDVSEKESPSVANDELSVQERADRKRKLIDLYGTKRSIKQARKLHSLMQEDDPETKKDLARKMKN-VVNKEALEGTNAQIA
        KIVP+    IFRLDPKV GSDV E ESPSVANDELSVQE+ADR R+L +LYGTK+SIKQA+KL SL QEDDPETKKDL  KMKN VVNKEALE +NAQI+
Subjt:  KIVPV---KIFRLDPKVRGSDVSEKESPSVANDELSVQERADRKRKLIDLYGTKRSIKQARKLHSLMQEDDPETKKDLARKMKN-VVNKEALEGTNAQIA

Query:  RNIPMYNASATTPQEAYPLDKIILMGEWSFLEDLYFLLQAESEVSANYPTFVRNRIYKLQDIQDEEEKKKFCCIFSYITHLIKYKDQHSMDGVSSAKDHK
        RNIP YNASATTPQEAYPLDKIIL GEW FLEDLYFLLQAESE+SANYP+FVRNRIYKLQDIQDEEEKKK CCI+SYITHLIKYKDQHSMDGVSS + HK
Subjt:  RNIPMYNASATTPQEAYPLDKIILMGEWSFLEDLYFLLQAESEVSANYPTFVRNRIYKLQDIQDEEEKKKFCCIFSYITHLIKYKDQHSMDGVSSAKDHK

Query:  IPSMLGQKFSSMFSTTESSRLSSEKINLLISHVLVLTLFVDEFRSDLSDIAKDLRTCPLTLRQHFDNLGCKFIGKNNLSLATLPIPLQFPKLKKKLRR
        IPSML QKFSSMFSTTES RLS+EK +LLISHVLVLTLF DEF SD SDIA+DLRT P TLR H+DNLGCKFI KNNLS  TLP+PLQFP+L++K RR
Subjt:  IPSMLGQKFSSMFSTTESSRLSSEKINLLISHVLVLTLFVDEFRSDLSDIAKDLRTCPLTLRQHFDNLGCKFIGKNNLSLATLPIPLQFPKLKKKLRR

SwissProt top hits

e value

%identity

Alignment

O14086 DNA-directed RNA polymerase I subunit rpa49

1.1e-10

25.3

Show/hide

Query:  IQVLSNQPDKTPPLV----GYFPSAVEEQHSVRARVYRHKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYTLGVFDRATKSLKIVPVKIFRLD
        +++L       PPLV    G++P       + R ++ +  N+ NR   ++  T   V F   N   ++TA  +   Y L V D+  +  KIVP K   L+
Subjt:  IQVLSNQPDKTPPLV----GYFPSAVEEQHSVRARVYRHKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYTLGVFDRATKSLKIVPVKIFRLD

Query:  PKVRGSDVSEKESPSVANDELSVQERADRKRKLIDL-YGTKRSIKQARKLHSLMQED----DPETKKDLARKMKNVVNK--EALEGTNAQIA------RN
           R     +++   +     +V      +R  + L +GT++S K      ++M+E       ET  D+  ++ + V K  EAL  T   IA      R 
Subjt:  PKVRGSDVSEKESPSVANDELSVQERADRKRKLIDL-YGTKRSIKQARKLHSLMQED----DPETKKDLARKMKNVVNK--EALEGTNAQIA------RN

Query:  IPMYNASATTPQEAYPLDKIILMGEWSFLEDLYFLLQAESE------VSANYPTFVRNRIYKLQDIQDEEEKKKFCCIFSYITHLIKYKDQHSMDGVSSA
        IP  N  A + ++AY L+ II   E+S +  +  LL+   E      +   +  F+  R  +L  I++ ++K+    I  YI+ L  +       G    
Subjt:  IPMYNASATTPQEAYPLDKIILMGEWSFLEDLYFLLQAESE------VSANYPTFVRNRIYKLQDIQDEEEKKKFCCIFSYITHLIKYKDQHSMDGVSSA

Query:  KDHKI---PSMLGQKFSSMFSTTE---SSRLSSEKINLLISHVLVLTLFVDEFRSDLSDIAKDLRTCPLTLRQHFDNLGCKF----------IGKN----
           K+   P +L       F+ T    S ++SS +++ +I ++LVL L VD + +D+  +A DL    +   + F  +GC+           +G N    
Subjt:  KDHKI---PSMLGQKFSSMFSTTE---SSRLSSEKINLLISHVLVLTLFVDEFRSDLSDIAKDLRTCPLTLRQHFDNLGCKF----------IGKN----

Query:  -NLSLATLPIPLQFPKLKK
         N   A L IPL+FPK ++
Subjt:  -NLSLATLPIPLQFPKLKK

Q54FE8 DNA-directed RNA polymerase I subunit rpa49

1.5e-15

24.21

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Query:  QHCTYTLGVFDRATKSLKIVPVKIFRLDPKVRGSDVSEKESPSVANDELSVQERADRKRKLIDLYGTKRSIKQARKLHSLMQEDDPETKKDLARKMKNVV
        ++  Y +G+FD+ TK LKIVP KI  ++  V G  ++  +S SV    +S +ER D+ +KL D +G+K + K+ +K+     E+      +   K  + V
Subjt:  QHCTYTLGVFDRATKSLKIVPVKIFRLDPKVRGSDVSEKESPSVANDELSVQERADRKRKLIDLYGTKRSIKQARKLHSLMQEDDPETKKDLARKMKNVV

Query:  NKEALEGTNAQIARNIPMYNASATTPQEAYPLDKIILMGEWSFLEDLYFL--LQAESEVSANYPTFVRNRIYKLQDIQDEEEKKKFCCIFSYITH---LI
          E  +  + +   ++P ++A     ++ Y ++ I+    +  L    FL  +   SE  +  P + ++++ + +DI+DEE+    C + +++ +   L+
Subjt:  NKEALEGTNAQIARNIPMYNASATTPQEAYPLDKIILMGEWSFLEDLYFL--LQAESEVSANYPTFVRNRIYKLQDIQDEEEKKKFCCIFSYITH---LI

Query:  KYKDQHS---MDGVSSAKDHKIPSMLGQKFS-SMFSTTESSRLSSEKINLLISHVLVLTLFVDEFR-SDLSDIAKDLRTCPLTLRQHFDNLGCKF--IGK
        K K  H     +G +S   + + S+ G K +   ++ ++  +L       + +++ +  L +++F+ +D+  +A+ L     +  +HF  +GCK   IG 
Subjt:  KYKDQHS---MDGVSSAKDHKIPSMLGQKFS-SMFSTTESSRLSSEKINLLISHVLVLTLFVDEFR-SDLSDIAKDLRTCPLTLRQHFDNLGCKF--IGK

Query:  NNLSLATLPIPLQFPKLK
           S+  L  PL+ PK +
Subjt:  NNLSLATLPIPLQFPKLK

Arabidopsis top hits

e value

%identity

Alignment

AT3G13940.1 DNA binding;DNA-directed RNA polymerases

2.6e-92

46.73

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Query:  KIQVLSNQPDKTPPLVGYF----------PSAVEEQHSV-RARVYRHK-NKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYTLGVFDRATKSLKI
        K+  ++ +PD+  P+V YF          P   +  H   +  VY+HK +   R+Q+VVSP G+ V+FVGTNY GE  A  Q  TY +GVF+R  K+L+I
Subjt:  KIQVLSNQPDKTPPLVGYF----------PSAVEEQHSV-RARVYRHK-NKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYTLGVFDRATKSLKI

Query:  VPV---KIFRLDPKVRGSDVSEKESPSVANDELSVQERADRKRKLIDLYGTKRSIKQARKLHSLMQEDDPETKKDLARKMKNV-VNKEALEGTNAQIARN
        +PV   KI RL+P+V+  + +E+E    A+    V+E  + K    D Y TK+++ + +K  +L   DD  T+K L  K+  + VN  ALEGT++ +ARN
Subjt:  VPV---KIFRLDPKVRGSDVSEKESPSVANDELSVQERADRKRKLIDLYGTKRSIKQARKLHSLMQEDDPETKKDLARKMKNV-VNKEALEGTNAQIARN

Query:  IPMYNASATTPQEAYPLDKIILMGEWSFLEDLYFLLQAESEVSAN-YPTFVRNRIYKLQDIQDEEEKKKFCCIFSYITHLIKYKDQHSMDGVSSAKDHKI
        IP YN +ATT  EAYPL+KII  G+WSFLED+Y+LLQ E+E +   YP FVRNR+Y+L+DI+D+ +K+  C   + +THL+K+KD++SM+G  SAKDHK+
Subjt:  IPMYNASATTPQEAYPLDKIILMGEWSFLEDLYFLLQAESEVSAN-YPTFVRNRIYKLQDIQDEEEKKKFCCIFSYITHLIKYKDQHSMDGVSSAKDHKI

Query:  PSMLGQKFSSMFSTTESSRLSSEKINLLISHVLVLTLFVDEFRSDLSDIAKDLRTCPLTLRQHFDNLGCKFIGKNNLSLATLPIPLQFPKLKKKLRRR
        P +  QKF+SMF  +ES R+  +KINLLIS+VLVL+L VD F +D  DIAKDLR   + LR+HF  LGCKF+ +N+ ++ATLP PL FP++ ++ R R
Subjt:  PSMLGQKFSSMFSTTESSRLSSEKINLLISHVLVLTLFVDEFRSDLSDIAKDLRTCPLTLRQHFDNLGCKFIGKNNLSLATLPIPLQFPKLKKKLRRR

Sequences

Show/hide sequences

CDS sequence

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ATGAATGCCAAAATCCAAGTCCTCAGCAACCAACCTGACAAAACTCCACCGTTAGTTGGTTATTTCCCTTCTGCAGTCGAGGAACAACATTCCGTTAGGGCTAGGGTTTA
TAGGCACAAGAACAAACCAAATAGGATGCAGCTGGTTGTTAGTCCAACAGGGTCGAATGTGGATTTTGTTGGTACCAATTATTTGGGTGAGGCTACTGCTGGGAAGCAGC
ATTGCACCTATACTCTCGGTGTTTTTGATCGGGCAACCAAAAGCTTAAAGATTGTGCCTGTTAAGATATTTAGATTGGATCCAAAAGTCAGAGGTTCAGATGTTTCTGAA
AAGGAATCCCCAAGTGTGGCAAATGATGAACTCTCTGTGCAGGAGAGAGCTGATAGAAAGAGAAAACTCATCGATCTCTATGGAACGAAGAGGTCAATAAAGCAGGCAAG
GAAGCTGCATTCTTTGATGCAAGAGGATGATCCTGAGACCAAGAAGGATCTAGCTCGGAAAATGAAAAATGTGGTAAACAAAGAGGCCTTGGAAGGGACGAATGCGCAAA
TTGCTCGCAATATACCAATGTATAATGCTTCTGCAACTACTCCACAAGAAGCTTACCCGCTCGACAAGATTATCCTTATGGGAGAATGGAGTTTCCTTGAAGATCTTTAT
TTCCTTTTGCAAGCAGAGTCTGAAGTAAGTGCTAATTATCCAACTTTTGTCCGCAACAGAATTTATAAATTGCAAGACATTCAGGACGAGGAGGAGAAGAAGAAGTTCTG
CTGCATATTTTCATACATAACTCATCTAATAAAGTATAAGGATCAGCATTCTATGGATGGAGTTTCTTCTGCAAAGGACCATAAAATTCCTAGCATGCTAGGCCAAAAGT
TCTCGTCCATGTTTTCGACTACCGAGTCGAGTCGACTGTCATCAGAGAAAATCAATCTTCTCATTAGCCACGTATTGGTGCTTACGCTATTTGTCGATGAATTCAGAAGC
GATCTATCAGACATAGCTAAGGATCTGAGAACCTGCCCTTTGACTCTAAGACAACATTTTGATAATCTGGGTTGCAAGTTTATAGGCAAAAACAACTTGTCATTGGCTAC
ACTTCCCATCCCACTTCAATTTCCCAAGTTGAAGAAAAAGTTACGACGACGGGCATCGATTGGATTTTCGTAA

mRNA sequence

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Protein sequence

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MNAKIQVLSNQPDKTPPLVGYFPSAVEEQHSVRARVYRHKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYTLGVFDRATKSLKIVPVKIFRLDPKVRGSDVSE
KESPSVANDELSVQERADRKRKLIDLYGTKRSIKQARKLHSLMQEDDPETKKDLARKMKNVVNKEALEGTNAQIARNIPMYNASATTPQEAYPLDKIILMGEWSFLEDLY
FLLQAESEVSANYPTFVRNRIYKLQDIQDEEEKKKFCCIFSYITHLIKYKDQHSMDGVSSAKDHKIPSMLGQKFSSMFSTTESSRLSSEKINLLISHVLVLTLFVDEFRS
DLSDIAKDLRTCPLTLRQHFDNLGCKFIGKNNLSLATLPIPLQFPKLKKKLRRRASIGFS

Sed0020704 (gene) of Chayote v1 genome