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Sed0020709 (gene) of Chayote v1 genome

Gene IDSed0020709
OrganismSechium edule (Chayote v1)
DescriptionSWIM-type domain-containing protein
Genome locationLG01:69435094..69436926
RNA-Seq ExpressionSed0020709
SyntenySed0020709
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN74432.1 hypothetical protein VITISV_040275 [Vitis vinifera]3.7e-0632.38Show/hide
Query:  ILCYTKGETRD---GVYFSEPPSKGIIFEKGKGFDELYEILNIQLGLPRGDRELEITYRSPATIASNSTRFVPLRLRNDCDVKFMVSIATHSEAPSCVEL
        +LCY  GE  D   GV +S PP K I+    K +DEL   +   L + R   +L + +R P  +A+ S  +  + + +D DV+ M +  T S   S +E+
Subjt:  ILCYTKGETRD---GVYFSEPPSKGIIFEKGKGFDELYEILNIQLGLPRGDRELEITYRSPATIASNSTRFVPLRLRNDCDVKFMVSIATHSEAPSCVEL

Query:  YIKRS
        Y++ S
Subjt:  YIKRS

RVW83159.1 hypothetical protein CK203_044939 [Vitis vinifera]1.2e-0427.42Show/hide
Query:  VIPILCYTKGETRD---GVYFSEPPSKGIIFEKGKGFDELYEILNIQLGLPRGDRELEITYRSP--ATIASNSTRFVPLRLRNDCDVKFMVSIATHSEAP
        ++ I+CY  GE  D   GV +S PP KG++      +DEL + L   + + R    L + +R P   +I + +  ++ L +++D DV+ M  +       
Subjt:  VIPILCYTKGETRD---GVYFSEPPSKGIIFEKGKGFDELYEILNIQLGLPRGDRELEITYRSP--ATIASNSTRFVPLRLRNDCDVKFMVSIATHSEAP

Query:  SCVELYIK-----RSETLESSWDQ
        + +E+Y++      S  L  S+DQ
Subjt:  SCVELYIK-----RSETLESSWDQ

RVX08500.1 hypothetical protein CK203_014195 [Vitis vinifera]2.0e-0733.64Show/hide
Query:  ILCYTKGETRD---GVYFSEPPSKGIIFEKGKGFDELYEILNIQLGLPRGDRELEITYRSPATIAS--NSTRFVPLRLRNDCDVKFMVSIATHSEAPSCV
        +LCYT+GE  D   GV ++ PP KG+       FDEL   L   L + R   +L + +R P    +   +  +VPL +R+D DV  M ++   S  P+ +
Subjt:  ILCYTKGETRD---GVYFSEPPSKGIIFEKGKGFDELYEILNIQLGLPRGDRELEITYRSPATIAS--NSTRFVPLRLRNDCDVKFMVSIATHSEAPSCV

Query:  ELYIKRS
        E+Y + S
Subjt:  ELYIKRS

XP_010655619.1 PREDICTED: uncharacterized protein LOC104880500 [Vitis vinifera]3.7e-0632.38Show/hide
Query:  ILCYTKGETRD---GVYFSEPPSKGIIFEKGKGFDELYEILNIQLGLPRGDRELEITYRSPATIASNSTRFVPLRLRNDCDVKFMVSIATHSEAPSCVEL
        +LCY  GE  D   GV +S PP K I+    K +DEL   +   L + R   +L + +R P  +A+ S  +  + + +D DV+ M +  T S   S +E+
Subjt:  ILCYTKGETRD---GVYFSEPPSKGIIFEKGKGFDELYEILNIQLGLPRGDRELEITYRSPATIASNSTRFVPLRLRNDCDVKFMVSIATHSEAPSCVEL

Query:  YIKRS
        Y++ S
Subjt:  YIKRS

XP_034698754.1 uncharacterized protein LOC117924268 [Vitis riparia]2.8e-0632.38Show/hide
Query:  ILCYTKGETRD---GVYFSEPPSKGIIFEKGKGFDELYEILNIQLGLPRGDRELEITYRSPATIASNSTRFVPLRLRNDCDVKFMVSIATHSEAPSCVEL
        +LCY  GE  D   GV +S PP K I+    K +DEL   +   L + R   +L + +R P  +A+ S  +  + + +D DV+ M +  T S   S +E+
Subjt:  ILCYTKGETRD---GVYFSEPPSKGIIFEKGKGFDELYEILNIQLGLPRGDRELEITYRSPATIASNSTRFVPLRLRNDCDVKFMVSIATHSEAPSCVEL

Query:  YIKRS
        Y++ S
Subjt:  YIKRS

TrEMBL top hitse value%identityAlignment
A0A438HFK5 SWIM-type domain-containing protein5.8e-0527.42Show/hide
Query:  VIPILCYTKGETRD---GVYFSEPPSKGIIFEKGKGFDELYEILNIQLGLPRGDRELEITYRSP--ATIASNSTRFVPLRLRNDCDVKFMVSIATHSEAP
        ++ I+CY  GE  D   GV +S PP KG++      +DEL + L   + + R    L + +R P   +I + +  ++ L +++D DV+ M  +       
Subjt:  VIPILCYTKGETRD---GVYFSEPPSKGIIFEKGKGFDELYEILNIQLGLPRGDRELEITYRSP--ATIASNSTRFVPLRLRNDCDVKFMVSIATHSEAP

Query:  SCVELYIK-----RSETLESSWDQ
        + +E+Y++      S  L  S+DQ
Subjt:  SCVELYIK-----RSETLESSWDQ

A0A438JHT2 Uncharacterized protein9.5e-0833.64Show/hide
Query:  ILCYTKGETRD---GVYFSEPPSKGIIFEKGKGFDELYEILNIQLGLPRGDRELEITYRSPATIAS--NSTRFVPLRLRNDCDVKFMVSIATHSEAPSCV
        +LCYT+GE  D   GV ++ PP KG+       FDEL   L   L + R   +L + +R P    +   +  +VPL +R+D DV  M ++   S  P+ +
Subjt:  ILCYTKGETRD---GVYFSEPPSKGIIFEKGKGFDELYEILNIQLGLPRGDRELEITYRSPATIAS--NSTRFVPLRLRNDCDVKFMVSIATHSEAPSCV

Query:  ELYIKRS
        E+Y + S
Subjt:  ELYIKRS

A5BD12 SWIM-type domain-containing protein1.8e-0632.38Show/hide
Query:  ILCYTKGETRD---GVYFSEPPSKGIIFEKGKGFDELYEILNIQLGLPRGDRELEITYRSPATIASNSTRFVPLRLRNDCDVKFMVSIATHSEAPSCVEL
        +LCY  GE  D   GV +S PP K I+    K +DEL   +   L + R   +L + +R P  +A+ S  +  + + +D DV+ M +  T S   S +E+
Subjt:  ILCYTKGETRD---GVYFSEPPSKGIIFEKGKGFDELYEILNIQLGLPRGDRELEITYRSPATIASNSTRFVPLRLRNDCDVKFMVSIATHSEAPSCVEL

Query:  YIKRS
        Y++ S
Subjt:  YIKRS

A5BXI2 SWIM-type domain-containing protein9.9e-0527.42Show/hide
Query:  VIPILCYTKGETRD---GVYFSEPPSKGIIFEKGKGFDELYEILNIQLGLPRGDRELEITYRSP--ATIASNSTRFVPLRLRNDCDVKFMVSIATHSEAP
        ++ I+CY  GE  D   GV +S PP KG++      +DEL + L   + + R    L + +R P   +I + +  ++ L +++D DV+ M  +       
Subjt:  VIPILCYTKGETRD---GVYFSEPPSKGIIFEKGKGFDELYEILNIQLGLPRGDRELEITYRSP--ATIASNSTRFVPLRLRNDCDVKFMVSIATHSEAP

Query:  SCVELYIK-----RSETLESSWDQ
        + +E+Y++      S  L  S+DQ
Subjt:  SCVELYIK-----RSETLESSWDQ

R0GJA1 SWIM-type domain-containing protein7.5e-0525.6Show/hide
Query:  MGVKVIPILCYTKGETR---DGVYFSEPPSKGIIFEKGKGFDELYEILNIQLGLPRGDRELEITYRSPATIASNSTRFVPLRLRNDCDVKFMVSIATHSE
        M  + IP+LCY  G  R   DG ++     + I  E    F +L +   +  G  +G  ++E+  R P+ +  +  +FV + + +DC ++ M+ + ++  
Subjt:  MGVKVIPILCYTKGETR---DGVYFSEPPSKGIIFEKGKGFDELYEILNIQLGLPRGDRELEITYRSPATIASNSTRFVPLRLRNDCDVKFMVSIATHSE

Query:  APSCVELYIKRSETLESSWDQTASN
        + S VELY++    L+      AS+
Subjt:  APSCVELYIKRSETLESSWDQTASN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGGTGAAGGTTATACCCATATTGTGCTATACAAAAGGAGAGACCAGGGATGGAGTATACTTTAGTGAACCTCCATCAAAAGGAATTATATTTGAAAAGGGCAAAGG
ATTTGATGAATTGTATGAGATTTTGAATATTCAACTTGGGCTTCCAAGAGGGGATAGAGAATTGGAAATAACTTATAGAAGCCCTGCAACTATTGCATCGAATTCTACTC
GATTTGTACCTTTACGCCTTCGAAATGATTGTGATGTGAAGTTTATGGTCTCTATAGCCACTCATTCTGAAGCTCCCAGTTGTGTGGAGTTGTATATCAAGAGATCTGAA
ACCTTGGAATCAAGTTGGGACCAAACTGCAAGTAATTGGCTCAAAGGTTTGGATCCGACCTGGGACGCACCGAATACGTTCTTCCATTGCAAGGATTGGGAGAATTCGTA
CAAAGAATTTCCTGGTTTGATGAACATATTGATGCAGACAAAAAAAGGCACTCAATTCAACTCAAAGGTTAGACTTGTAGTTGTAACAAGTGGCAATCATTTGGGATTCC
ATGCTCTCATGCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGGTGAAGGTTATACCCATATTGTGCTATACAAAAGGAGAGACCAGGGATGGAGTATACTTTAGTGAACCTCCATCAAAAGGAATTATATTTGAAAAGGGCAAAGG
ATTTGATGAATTGTATGAGATTTTGAATATTCAACTTGGGCTTCCAAGAGGGGATAGAGAATTGGAAATAACTTATAGAAGCCCTGCAACTATTGCATCGAATTCTACTC
GATTTGTACCTTTACGCCTTCGAAATGATTGTGATGTGAAGTTTATGGTCTCTATAGCCACTCATTCTGAAGCTCCCAGTTGTGTGGAGTTGTATATCAAGAGATCTGAA
ACCTTGGAATCAAGTTGGGACCAAACTGCAAGTAATTGGCTCAAAGGTTTGGATCCGACCTGGGACGCACCGAATACGTTCTTCCATTGCAAGGATTGGGAGAATTCGTA
CAAAGAATTTCCTGGTTTGATGAACATATTGATGCAGACAAAAAAAGGCACTCAATTCAACTCAAAGGTTAGACTTGTAGTTGTAACAAGTGGCAATCATTTGGGATTCC
ATGCTCTCATGCAATAG
Protein sequenceShow/hide protein sequence
MGVKVIPILCYTKGETRDGVYFSEPPSKGIIFEKGKGFDELYEILNIQLGLPRGDRELEITYRSPATIASNSTRFVPLRLRNDCDVKFMVSIATHSEAPSCVELYIKRSE
TLESSWDQTASNWLKGLDPTWDAPNTFFHCKDWENSYKEFPGLMNILMQTKKGTQFNSKVRLVVVTSGNHLGFHALMQ