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Sed0020727 (gene) of Chayote v1 genome

Gene IDSed0020727
OrganismSechium edule (Chayote v1)
DescriptionZinc finger, C2H2-like protein
Genome locationLG07:40805440..40805814
RNA-Seq ExpressionSed0020727
SyntenySed0020727
Gene Ontology termsNA
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600035.1 Zinc finger protein 10, partial [Cucurbita argyrosperma subsp. sororia]1.9e-4375.97Show/hide
Query:  MAKTHNVWRQMILNYSNAFKTTPSSWEEKAFAEDTAAAVWPPRSYSCHFCSRQFRSAQALGGHMNVHRRDRARLQNNPNHPFLLKPTPSLDLHL-----K
        MA+TH++WRQ ILNYSN FK +P SWEEKAFAEDTAAAVWPPRSYSC+FC RQFRSAQALGGHMNVHRRDRARLQNNPN  FL+KPTP+LDL       K
Subjt:  MAKTHNVWRQMILNYSNAFKTTPSSWEEKAFAEDTAAAVWPPRSYSCHFCSRQFRSAQALGGHMNVHRRDRARLQNNPNHPFLLKPTPSLDLHL-----K

Query:  INGSDSTLFSVKRAKLCVSEDQLDLELKL
         + SDS    +KRAK+CVSE+QLDLELKL
Subjt:  INGSDSTLFSVKRAKLCVSEDQLDLELKL

XP_004151402.2 zinc finger protein 11 [Cucumis sativus]1.0e-2857.55Show/hide
Query:  MAKTHNVWRQMILNYSNAFKTTPSSWEEKAFAEDTAAAVWPPRSYSCHFCSRQFRSAQALGGHMNVHRRDRARLQNNPNHPFLLKP-TPSLDL---HLKI
        MA+TH +WRQ++       KTT    +EKAFA+D  AAVWPPRSYSC FC RQFRSAQALGGHMNVHRRDRA+LQN+PN PF +KP TP+ DL   H   
Subjt:  MAKTHNVWRQMILNYSNAFKTTPSSWEEKAFAEDTAAAVWPPRSYSCHFCSRQFRSAQALGGHMNVHRRDRARLQNNPNHPFLLKP-TPSLDL---HLKI

Query:  NGSDSTLFSVKRAKLCV-----------SEDQLDLELKL
          +DS  FS+K+ KL             SE  LDLELKL
Subjt:  NGSDSTLFSVKRAKLCV-----------SEDQLDLELKL

XP_008461701.1 PREDICTED: transcriptional regulator SUPERMAN-like [Cucumis melo]6.0e-2959.26Show/hide
Query:  MAKTHNVWRQMILNYSNAFKTTPSSWEEKAFAEDTAAAVWPPRSYSCHFCSRQFRSAQALGGHMNVHRRDRARLQNNPN-HPFLLKPTPSLDL---HLKI
        MA+TH VWRQ++       KTT    +EKAFA+D  AAVWPPRSYSC FC RQFRSAQALGGHMNVHRRDRA+LQN+PN  PF +KPTP+ DL   H   
Subjt:  MAKTHNVWRQMILNYSNAFKTTPSSWEEKAFAEDTAAAVWPPRSYSCHFCSRQFRSAQALGGHMNVHRRDRARLQNNPN-HPFLLKPTPSLDL---HLKI

Query:  NGSDSTLFSVKRAKLCV-------SEDQLDLELKL
          ++S  FS+K+ KL         SE  LDLELKL
Subjt:  NGSDSTLFSVKRAKLCV-------SEDQLDLELKL

XP_022988302.1 zinc finger protein 10-like [Cucurbita maxima]1.9e-4375.97Show/hide
Query:  MAKTHNVWRQMILNYSNAFKTTPSSWEEKAFAEDTAAAVWPPRSYSCHFCSRQFRSAQALGGHMNVHRRDRARLQNNPNHPFLLKPTPSLDLHL-----K
        MA+TH++WRQ ILNYSN FK +P SWEEKAFAEDTAAAVWPPRSYSC+FC RQFRSAQALGGHMNVHRRDRARLQNNPN  FL+KPTP+LDL       K
Subjt:  MAKTHNVWRQMILNYSNAFKTTPSSWEEKAFAEDTAAAVWPPRSYSCHFCSRQFRSAQALGGHMNVHRRDRARLQNNPNHPFLLKPTPSLDLHL-----K

Query:  INGSDSTLFSVKRAKLCVSEDQLDLELKL
         + SDS    +KRAK+CVSE+QLDLELKL
Subjt:  INGSDSTLFSVKRAKLCVSEDQLDLELKL

XP_023542190.1 zinc finger protein 10-like [Cucurbita pepo subsp. pepo]5.0e-4476.74Show/hide
Query:  MAKTHNVWRQMILNYSNAFKTTPSSWEEKAFAEDTAAAVWPPRSYSCHFCSRQFRSAQALGGHMNVHRRDRARLQNNPNHPFLLKPTPSLDLHL-----K
        MA+TH++WRQ ILNYSN FK +P SWEEKAFAEDTAAAVWPPRSYSC+FC RQFRSAQALGGHMNVHRRDRARLQNNPN  FL+KPTP+LDL       K
Subjt:  MAKTHNVWRQMILNYSNAFKTTPSSWEEKAFAEDTAAAVWPPRSYSCHFCSRQFRSAQALGGHMNVHRRDRARLQNNPNHPFLLKPTPSLDLHL-----K

Query:  INGSDSTLFSVKRAKLCVSEDQLDLELKL
         N SDS    +KRAK+CVSE+QLDLELKL
Subjt:  INGSDSTLFSVKRAKLCVSEDQLDLELKL

TrEMBL top hitse value%identityAlignment
A0A0A0KLQ3 C2H2-type domain-containing protein4.9e-2957.55Show/hide
Query:  MAKTHNVWRQMILNYSNAFKTTPSSWEEKAFAEDTAAAVWPPRSYSCHFCSRQFRSAQALGGHMNVHRRDRARLQNNPNHPFLLKP-TPSLDL---HLKI
        MA+TH +WRQ++       KTT    +EKAFA+D  AAVWPPRSYSC FC RQFRSAQALGGHMNVHRRDRA+LQN+PN PF +KP TP+ DL   H   
Subjt:  MAKTHNVWRQMILNYSNAFKTTPSSWEEKAFAEDTAAAVWPPRSYSCHFCSRQFRSAQALGGHMNVHRRDRARLQNNPNHPFLLKP-TPSLDL---HLKI

Query:  NGSDSTLFSVKRAKLCV-----------SEDQLDLELKL
          +DS  FS+K+ KL             SE  LDLELKL
Subjt:  NGSDSTLFSVKRAKLCV-----------SEDQLDLELKL

A0A1S3CGM6 transcriptional regulator SUPERMAN-like2.9e-2959.26Show/hide
Query:  MAKTHNVWRQMILNYSNAFKTTPSSWEEKAFAEDTAAAVWPPRSYSCHFCSRQFRSAQALGGHMNVHRRDRARLQNNPN-HPFLLKPTPSLDL---HLKI
        MA+TH VWRQ++       KTT    +EKAFA+D  AAVWPPRSYSC FC RQFRSAQALGGHMNVHRRDRA+LQN+PN  PF +KPTP+ DL   H   
Subjt:  MAKTHNVWRQMILNYSNAFKTTPSSWEEKAFAEDTAAAVWPPRSYSCHFCSRQFRSAQALGGHMNVHRRDRARLQNNPN-HPFLLKPTPSLDL---HLKI

Query:  NGSDSTLFSVKRAKLCV-------SEDQLDLELKL
          ++S  FS+K+ KL         SE  LDLELKL
Subjt:  NGSDSTLFSVKRAKLCV-------SEDQLDLELKL

A0A5A7UA35 Transcriptional regulator SUPERMAN-like2.9e-2959.26Show/hide
Query:  MAKTHNVWRQMILNYSNAFKTTPSSWEEKAFAEDTAAAVWPPRSYSCHFCSRQFRSAQALGGHMNVHRRDRARLQNNPN-HPFLLKPTPSLDL---HLKI
        MA+TH VWRQ++       KTT    +EKAFA+D  AAVWPPRSYSC FC RQFRSAQALGGHMNVHRRDRA+LQN+PN  PF +KPTP+ DL   H   
Subjt:  MAKTHNVWRQMILNYSNAFKTTPSSWEEKAFAEDTAAAVWPPRSYSCHFCSRQFRSAQALGGHMNVHRRDRARLQNNPN-HPFLLKPTPSLDL---HLKI

Query:  NGSDSTLFSVKRAKLCV-------SEDQLDLELKL
          ++S  FS+K+ KL         SE  LDLELKL
Subjt:  NGSDSTLFSVKRAKLCV-------SEDQLDLELKL

A0A6J1JCP1 zinc finger protein 10-like9.3e-4475.97Show/hide
Query:  MAKTHNVWRQMILNYSNAFKTTPSSWEEKAFAEDTAAAVWPPRSYSCHFCSRQFRSAQALGGHMNVHRRDRARLQNNPNHPFLLKPTPSLDLHL-----K
        MA+TH++WRQ ILNYSN FK +P SWEEKAFAEDTAAAVWPPRSYSC+FC RQFRSAQALGGHMNVHRRDRARLQNNPN  FL+KPTP+LDL       K
Subjt:  MAKTHNVWRQMILNYSNAFKTTPSSWEEKAFAEDTAAAVWPPRSYSCHFCSRQFRSAQALGGHMNVHRRDRARLQNNPNHPFLLKPTPSLDLHL-----K

Query:  INGSDSTLFSVKRAKLCVSEDQLDLELKL
         + SDS    +KRAK+CVSE+QLDLELKL
Subjt:  INGSDSTLFSVKRAKLCVSEDQLDLELKL

V4TBE4 C2H2-type domain-containing protein3.5e-1967.11Show/hide
Query:  RQMILNYSNAFKTTPSSWEEKAFAEDTAA-----AVWPPRSYSCHFCSRQFRSAQALGGHMNVHRRDRARLQNNPN
        R  IL YS +  ++ SSWEEKAFAED AA      +WPPRSYSC FC R+F+SAQALGGHMNVHRRDRARL+N+ N
Subjt:  RQMILNYSNAFKTTPSSWEEKAFAEDTAA-----AVWPPRSYSCHFCSRQFRSAQALGGHMNVHRRDRARLQNNPN

SwissProt top hitse value%identityAlignment
O80942 Zinc finger protein 101.4e-1779.25Show/hide
Query:  SSWEEKAFAEDTAA-AVWPPRSYSCHFCSRQFRSAQALGGHMNVHRRDRARLQ
        SSWEE AFAED AA ++WPPRSY+C FC R+F+SAQALGGHMNVHRRDRARL+
Subjt:  SSWEEKAFAEDTAA-AVWPPRSYSCHFCSRQFRSAQALGGHMNVHRRDRARLQ

Q38895 Transcriptional regulator SUPERMAN1.8e-1267.35Show/hide
Query:  WPPRSYSCHFCSRQFRSAQALGGHMNVHRRDRARLQNNPNHPFLLKPTP
        WPPRSY+C FC R+FRSAQALGGHMNVHRRDRARL+   +      P+P
Subjt:  WPPRSYSCHFCSRQFRSAQALGGHMNVHRRDRARLQNNPNHPFLLKPTP

Q42485 Zinc finger protein 13.0e-0737.66Show/hide
Query:  LNYSNAFKTTPSSWEEKAFAEDTAAAVWPPRSYSCHFCSRQFRSAQALGGHMNVHRRDRARLQNNPNHPFLLKPTPS
        LN  ++FKT+ SS       ++  A    PR +SC++C R+F S+QALGGH N H+R+R   +    +   L   PS
Subjt:  LNYSNAFKTTPSSWEEKAFAEDTAAAVWPPRSYSCHFCSRQFRSAQALGGHMNVHRRDRARLQNNPNHPFLLKPTPS

Q9LHS9 Probable transcriptional regulator RABBIT EARS2.8e-1361.67Show/hide
Query:  EEKAFAE-----DTAAAVWPPRSYSCHFCSRQFRSAQALGGHMNVHRRDRARLQNNPNHP
        EE+AFA           +WPPRSYSC FC R+F+SAQALGGHMNVHRRDRARL+     P
Subjt:  EEKAFAE-----DTAAAVWPPRSYSCHFCSRQFRSAQALGGHMNVHRRDRARLQNNPNHP

Q9SLB8 Zinc finger protein 119.0e-1269.77Show/hide
Query:  WPPRSYSCHFCSRQFRSAQALGGHMNVHRRDRARLQNNPNHPF
        WPP++Y+C FC R+FRSAQALGGHMNVHRRDRA+L+  P+  F
Subjt:  WPPRSYSCHFCSRQFRSAQALGGHMNVHRRDRARLQNNPNHPF

Arabidopsis top hitse value%identityAlignment
AT2G37740.1 zinc-finger protein 101.0e-1879.25Show/hide
Query:  SSWEEKAFAEDTAA-AVWPPRSYSCHFCSRQFRSAQALGGHMNVHRRDRARLQ
        SSWEE AFAED AA ++WPPRSY+C FC R+F+SAQALGGHMNVHRRDRARL+
Subjt:  SSWEEKAFAEDTAA-AVWPPRSYSCHFCSRQFRSAQALGGHMNVHRRDRARLQ

AT2G42410.1 zinc finger protein 116.4e-1369.77Show/hide
Query:  WPPRSYSCHFCSRQFRSAQALGGHMNVHRRDRARLQNNPNHPF
        WPP++Y+C FC R+FRSAQALGGHMNVHRRDRA+L+  P+  F
Subjt:  WPPRSYSCHFCSRQFRSAQALGGHMNVHRRDRARLQNNPNHPF

AT3G23130.1 C2H2 and C2HC zinc fingers superfamily protein1.3e-1367.35Show/hide
Query:  WPPRSYSCHFCSRQFRSAQALGGHMNVHRRDRARLQNNPNHPFLLKPTP
        WPPRSY+C FC R+FRSAQALGGHMNVHRRDRARL+   +      P+P
Subjt:  WPPRSYSCHFCSRQFRSAQALGGHMNVHRRDRARLQNNPNHPFLLKPTP

AT4G17810.1 C2H2 and C2HC zinc fingers superfamily protein4.7e-1671.15Show/hide
Query:  SWEEKAFAEDT----AAAVWPPRSYSCHFCSRQFRSAQALGGHMNVHRRDRA
        SWE KAF +DT    +   WPPRSY+C+FC R+FRSAQALGGHMNVHRRDRA
Subjt:  SWEEKAFAEDT----AAAVWPPRSYSCHFCSRQFRSAQALGGHMNVHRRDRA

AT5G06070.1 C2H2 and C2HC zinc fingers superfamily protein2.0e-1461.67Show/hide
Query:  EEKAFAE-----DTAAAVWPPRSYSCHFCSRQFRSAQALGGHMNVHRRDRARLQNNPNHP
        EE+AFA           +WPPRSYSC FC R+F+SAQALGGHMNVHRRDRARL+     P
Subjt:  EEKAFAE-----DTAAAVWPPRSYSCHFCSRQFRSAQALGGHMNVHRRDRARLQNNPNHP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAAAACCCACAATGTATGGAGACAAATGATCCTCAACTATTCCAACGCCTTCAAAACGACACCGTCGTCGTGGGAAGAGAAAGCCTTCGCCGAGGACACCGCGGC
CGCGGTCTGGCCCCCGAGATCCTACTCGTGCCACTTCTGCTCGAGACAATTCCGGTCAGCTCAGGCCCTCGGCGGTCACATGAACGTCCATCGAAGAGACCGCGCCCGCC
TCCAAAACAATCCCAACCATCCATTTCTCCTCAAACCAACTCCCTCCCTTGATCTTCATCTCAAGATCAACGGCTCAGATTCTACGCTCTTCTCTGTCAAAAGAGCCAAA
CTTTGTGTTTCTGAAGATCAGCTTGACCTTGAGCTCAAGTTATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAAAAACCCACAATGTATGGAGACAAATGATCCTCAACTATTCCAACGCCTTCAAAACGACACCGTCGTCGTGGGAAGAGAAAGCCTTCGCCGAGGACACCGCGGC
CGCGGTCTGGCCCCCGAGATCCTACTCGTGCCACTTCTGCTCGAGACAATTCCGGTCAGCTCAGGCCCTCGGCGGTCACATGAACGTCCATCGAAGAGACCGCGCCCGCC
TCCAAAACAATCCCAACCATCCATTTCTCCTCAAACCAACTCCCTCCCTTGATCTTCATCTCAAGATCAACGGCTCAGATTCTACGCTCTTCTCTGTCAAAAGAGCCAAA
CTTTGTGTTTCTGAAGATCAGCTTGACCTTGAGCTCAAGTTATAG
Protein sequenceShow/hide protein sequence
MAKTHNVWRQMILNYSNAFKTTPSSWEEKAFAEDTAAAVWPPRSYSCHFCSRQFRSAQALGGHMNVHRRDRARLQNNPNHPFLLKPTPSLDLHLKINGSDSTLFSVKRAK
LCVSEDQLDLELKL