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Sed0020818 (gene) of Chayote v1 genome

Gene IDSed0020818
OrganismSechium edule (Chayote v1)
DescriptionLysM domain-containing protein
Genome locationLG14:3299766..3300443
RNA-Seq ExpressionSed0020818
SyntenySed0020818
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR018392 - LysM domain
IPR036779 - LysM domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647420.1 hypothetical protein Csa_003059 [Cucumis sativus]2.1e-2371.43Show/hide
Query:  AKSISTMMEILALVLVLSCWSCHCKSQELL-MGCDEIYVVREGETLHSISEKCGDLFIVEENPHINDPDDVFPGLVIKITPFHH
        + S+S    +  ++LVLSC    CKS ELL   C+EIYVV EGETL SISEKCGD FIVEENPHINDPDDVFPGLVIKITPFHH
Subjt:  AKSISTMMEILALVLVLSCWSCHCKSQELL-MGCDEIYVVREGETLHSISEKCGDLFIVEENPHINDPDDVFPGLVIKITPFHH

KAG6595189.1 hypothetical protein SDJN03_11742, partial [Cucurbita argyrosperma subsp. sororia]2.3e-2572.83Show/hide
Query:  MAKSISTMMEILALVLVLSCWSCH-CKSQELLMGCDEIYVVREGETLHSISEKCGDLFIVEENPHINDPDDVFPGLVIKITPF-HHIVHGLR
        MAK  S+  E L LVLVLS W    C SQE+LMGCDEIYVVREGETL SISEKCGD FI E NPHIND DDVFPGLVIKITPF H  + G+R
Subjt:  MAKSISTMMEILALVLVLSCWSCH-CKSQELLMGCDEIYVVREGETLHSISEKCGDLFIVEENPHINDPDDVFPGLVIKITPF-HHIVHGLR

PIN05403.1 hypothetical protein CDL12_22060 [Handroanthus impetiginosus]1.9e-1960.4Show/hide
Query:  AKSISTMME--------ILALVLVLSCW---------SCHCKSQELLM---GCDEIYVVREGETLHSISEKCGDLFIVEENPHINDPDDVFPGLVIKITP
        AKS++ + E        +LAL+LVLSC          +   K+ E L     CDEIYVVREGETLH+ISEKCGD FIVEENPHI+DPDDVFPGLVIKITP
Subjt:  AKSISTMME--------ILALVLVLSCW---------SCHCKSQELLM---GCDEIYVVREGETLHSISEKCGDLFIVEENPHINDPDDVFPGLVIKITP

Query:  F
        F
Subjt:  F

XP_002283136.1 PREDICTED: uncharacterized protein LOC100244252 [Vitis vinifera]1.9e-1963.86Show/hide
Query:  ILALVLVLSCWSCHCKSQELLM---------GCDEIYVVREGETLHSISEKCGDLFIVEENPHINDPDDVFPGLVIKITPFHH
        +LAL+LVLSC        E+++          CDEIYVVREGETLH+ISEKCGD +IVEENPHI+DPDDVFPGLVIKITP+++
Subjt:  ILALVLVLSCWSCHCKSQELLM---------GCDEIYVVREGETLHSISEKCGDLFIVEENPHINDPDDVFPGLVIKITPFHH

XP_012066520.1 uncharacterized protein LOC105629522 [Jatropha curcas]1.3e-2064.29Show/hide
Query:  ILALVLVLSCWSCHCKSQELLM----------GCDEIYVVREGETLHSISEKCGDLFIVEENPHINDPDDVFPGLVIKITPFHH
        ++A++++LSC  C     E +M          GCDEIYVVREGETLHSISEKCGD +IVEENPHI+DPDDVFPGLVIKITPF++
Subjt:  ILALVLVLSCWSCHCKSQELLM----------GCDEIYVVREGETLHSISEKCGDLFIVEENPHINDPDDVFPGLVIKITPFHH

TrEMBL top hitse value%identityAlignment
A0A2G9GJE3 LysM domain-containing protein9.0e-2060.4Show/hide
Query:  AKSISTMME--------ILALVLVLSCW---------SCHCKSQELLM---GCDEIYVVREGETLHSISEKCGDLFIVEENPHINDPDDVFPGLVIKITP
        AKS++ + E        +LAL+LVLSC          +   K+ E L     CDEIYVVREGETLH+ISEKCGD FIVEENPHI+DPDDVFPGLVIKITP
Subjt:  AKSISTMME--------ILALVLVLSCW---------SCHCKSQELLM---GCDEIYVVREGETLHSISEKCGDLFIVEENPHINDPDDVFPGLVIKITP

Query:  F
        F
Subjt:  F

A0A438EJV6 LysM domain-containing protein1.2e-1963.86Show/hide
Query:  ILALVLVLSCWSCHCKSQELLM---------GCDEIYVVREGETLHSISEKCGDLFIVEENPHINDPDDVFPGLVIKITPFHH
        +LAL+LVLSC        E+++          CDEIYVVREGETLH+ISEKCGD +IVEENPHI+DPDDVFPGLVIKITP+++
Subjt:  ILALVLVLSCWSCHCKSQELLM---------GCDEIYVVREGETLHSISEKCGDLFIVEENPHINDPDDVFPGLVIKITPFHH

A0A438JSE7 LysM domain-containing protein9.0e-2063.86Show/hide
Query:  ILALVLVLSCWSCHCKSQELLM---------GCDEIYVVREGETLHSISEKCGDLFIVEENPHINDPDDVFPGLVIKITPFHH
        +LAL+LVLSC        E+++          CDEIYVVREGETLH+ISEKCGD +IVEENPHI+DPDDVFPGLVIKITP+++
Subjt:  ILALVLVLSCWSCHCKSQELLM---------GCDEIYVVREGETLHSISEKCGDLFIVEENPHINDPDDVFPGLVIKITPFHH

A0A6N2LQ08 LysM domain-containing protein1.2e-1963.83Show/hide
Query:  MAKSISTMMEIL-ALVLVLSCWSCHCKSQELL----------MGCDEIYVVREGETLHSISEKCGDLFIVEENPHINDPDDVFPGLVIKITPFH
        MA+ IS    +L ALVLVL C  C     EL             CDEIYVVREGETLH+ISEKCGD +IVEENPHI+DPDDVFPGLVIKITPF+
Subjt:  MAKSISTMMEIL-ALVLVLSCWSCHCKSQELL----------MGCDEIYVVREGETLHSISEKCGDLFIVEENPHINDPDDVFPGLVIKITPFH

A0A7J6W511 Peptidoglycan-binding LysM domain-containing protein1.2e-1968.83Show/hide
Query:  LALVLVLSCWSCHCKSQELLMG------CDEIYVVREGETLHSISEKCGDLFIVEENPHINDPDDVFPGLVIKITPF
        LA+VL+LSC         ++M       CDEIYVV EGETLH+ISEKCGD +IVEENPHINDPDDVFPGLVIKITPF
Subjt:  LALVLVLSCWSCHCKSQELLMG------CDEIYVVREGETLHSISEKCGDLFIVEENPHINDPDDVFPGLVIKITPF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52790.1 peptidoglycan-binding LysM domain-containing protein2.1e-1675Show/hide
Query:  CDEIYVVREGETLHSISEKCGDLFIVEENPHINDPDDVFPGLVIKITP
        CDEIY V+EGETL +ISEKCGD +IVE NPHI+D DD+FPGL+I+ITP
Subjt:  CDEIYVVREGETLHSISEKCGDLFIVEENPHINDPDDVFPGLVIKITP

AT4G25433.1 peptidoglycan-binding LysM domain-containing protein1.9e-1780.43Show/hide
Query:  CDEIYVVREGETLHSISEKCGDLFIVEENPHINDPDDVFPGLVIKI
        C+E+YVV EG+TLHSISEKCGD FIVE NPHI+DPDDVFPGL+IK+
Subjt:  CDEIYVVREGETLHSISEKCGDLFIVEENPHINDPDDVFPGLVIKI

AT5G62150.1 peptidoglycan-binding LysM domain-containing protein5.8e-1957.69Show/hide
Query:  ILALVLVLSCWSCHCK-----SQELLMGCDEIYVVREGETLHSISEKCGDLFIVEENPHINDPDDVFPGLVIKITPFH
        +L+L+L+LS    +       SQ     C+EIY+V EGETLH+I +KCGD FIVE NPHI+DPDDVFPGLV+KI PF+
Subjt:  ILALVLVLSCWSCHCK-----SQELLMGCDEIYVVREGETLHSISEKCGDLFIVEENPHINDPDDVFPGLVIKITPFH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAAGAGTATATCAACAATGATGGAGATTTTGGCTTTGGTTTTGGTTTTGAGCTGTTGGTCATGCCATTGCAAGAGCCAAGAGTTATTGATGGGTTGTGATGAGAT
ATATGTTGTTCGTGAAGGGGAAACATTGCATAGCATTAGTGAAAAATGTGGAGATCTTTTTATTGTTGAAGAGAATCCTCATATTAATGATCCAGATGATGTTTTTCCTG
GTTTGGTCATCAAAATCACTCCTTTTCATCATATTGTTCACGGGCTTCGTCACATTTGA
mRNA sequenceShow/hide mRNA sequence
TTATAACCCCCCAAAAATCTTTCTTTTCACTTCAATCTCTTATATATATATTAACATAATCTTCACCCCAAAGAAAACAACTCCAAAAAACAAAAGCTACCCAATTTTTG
ATATCATAAATCAACAGCAATGGCCAAGAGTATATCAACAATGATGGAGATTTTGGCTTTGGTTTTGGTTTTGAGCTGTTGGTCATGCCATTGCAAGAGCCAAGAGTTAT
TGATGGGTTGTGATGAGATATATGTTGTTCGTGAAGGGGAAACATTGCATAGCATTAGTGAAAAATGTGGAGATCTTTTTATTGTTGAAGAGAATCCTCATATTAATGAT
CCAGATGATGTTTTTCCTGGTTTGGTCATCAAAATCACTCCTTTTCATCATATTGTTCACGGGCTTCGTCACATTTGAATTTCGTGATAGCAATGGATTCAATATATGAT
GGTCGTCAACCCAAAAATTAATTTCTTATCAATTTTCTTGACATTCAAATATTGTAGAATCATGCGGTATGTCCTATAACCTTAATTAACACGAGCATGAGATGACACTC
ACAAAAAGAAATTTTTTTTTCTTTTTTCTTTTTTTTTTTCTTTTCTCTTTCAAGTTTTGTGGATCTTCTTGTAAATATGGTAAGAGAACTTTATGTTCAAATTTACTTCA
TGATATATTAAAAGGAAG
Protein sequenceShow/hide protein sequence
MAKSISTMMEILALVLVLSCWSCHCKSQELLMGCDEIYVVREGETLHSISEKCGDLFIVEENPHINDPDDVFPGLVIKITPFHHIVHGLRHI