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Sed0020931 (gene) of Chayote v1 genome

Gene IDSed0020931
OrganismSechium edule (Chayote v1)
Descriptionprotein LATERAL ROOT PRIMORDIUM 1
Genome locationLG04:38997949..39001195
RNA-Seq ExpressionSed0020931
SyntenySed0020931
Gene Ontology termsGO:0009734 - auxin-activated signaling pathway (biological process)
GO:0009851 - auxin biosynthetic process (biological process)
GO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR006510 - Zinc finger, lateral root primordium type 1
IPR006511 - SHORT INTERNODES, C-terminal
IPR007818 - SHI protein family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034761.1 protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo var. makuwa]4.0e-11371.17Show/hide
Query:  MLSLRDVLLIAPTSSSLHPHTHILSSD-------PSSAALGVGVGIYPLFAAAPCFPPP-----NHAPEELADGTRSLENVKRTQDFGFGKGDSLI----
        ML LRDVL IAPT SSLH  T I+SSD       PSS ALGV VGI+PL AA PC PP      NH P+++ D TR+ +N+KRTQDFGFGKG+SLI    
Subjt:  MLSLRDVLLIAPTSSSLHPHTHILSSD-------PSSAALGVGVGIYPLFAAAPCFPPP-----NHAPEELADGTRSLENVKRTQDFGFGKGDSLI----

Query:  ------------GDNSTAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVAT-SADGGSSGSSSAGAKRPRVLIPSQ
                    GD S AVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQ LVVMDGVAT S DGGSSGSSSAGAKRPRVLIPSQ
Subjt:  ------------GDNSTAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVAT-SADGGSSGSSSAGAKRPRVLIPSQ

Query:  STAVAVASAAAASHASTSNGTNRPSFETTSNHQ----------------DASFKKSLPGKVRAPAMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLY
               SAAAA+ ASTSN T   SFETTS+HQ                DASFKKSLPG VRAPA+FR HRVTAISSGEGELAYQATVNIGGHVFKGFLY
Subjt:  STAVAVASAAAASHASTSNGTNRPSFETTSNHQ----------------DASFKKSLPGKVRAPAMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLY

Query:  DQGVDDKNAFPSLSHLHLESGNHHRE
        DQG DDKNAFPS+SHLHL+SGNHHRE
Subjt:  DQGVDDKNAFPSLSHLHLESGNHHRE

XP_004142483.1 protein LATERAL ROOT PRIMORDIUM 1 [Cucumis sativus]2.9e-11674.84Show/hide
Query:  MLSLRDVLLIAPTSSSLHPHTHILSSD-------PSSAALGVGVGIYPLFAAAPCFPPP-----NHAPEELADGTRSLENVKRTQDFGFGKGDSLI----
        ML LRDVL IAPT SSLH  T I+SSD       PSS ALGV VGI+PL AA PC PP      NH P+++ D TR+ +N+KRTQDFGFGKG+SLI    
Subjt:  MLSLRDVLLIAPTSSSLHPHTHILSSD-------PSSAALGVGVGIYPLFAAAPCFPPP-----NHAPEELADGTRSLENVKRTQDFGFGKGDSLI----

Query:  ------------GDNSTAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVAT-SADGGSSGSSSAGAKRPRVLIPSQ
                    GD S AVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQ LVVMDGVAT S DGGSSGSSSAGAKRPRVLIPSQ
Subjt:  ------------GDNSTAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVAT-SADGGSSGSSSAGAKRPRVLIPSQ

Query:  STAVAVASAAAASHASTSNGTNRPSFETTSNHQDASFKKSLPGKVRAPAMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVDDKNAFPSLSHL
               SAAAA+ ASTSN T   SFETTS+HQDASFKKSLPG VRAPA+FR HRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG DDKNAFPS+SHL
Subjt:  STAVAVASAAAASHASTSNGTNRPSFETTSNHQDASFKKSLPGKVRAPAMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVDDKNAFPSLSHL

Query:  HLESGNHHRE
        HL+SGNHHRE
Subjt:  HLESGNHHRE

XP_008446964.1 PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo]2.9e-11674.84Show/hide
Query:  MLSLRDVLLIAPTSSSLHPHTHILSSD-------PSSAALGVGVGIYPLFAAAPCFPPP-----NHAPEELADGTRSLENVKRTQDFGFGKGDSLI----
        ML LRDVL IAPT SSLH  T I+SSD       PSS ALGV VGI+PL AA PC PP      NH P+++ D TR+ +N+KRTQDFGFGKG+SLI    
Subjt:  MLSLRDVLLIAPTSSSLHPHTHILSSD-------PSSAALGVGVGIYPLFAAAPCFPPP-----NHAPEELADGTRSLENVKRTQDFGFGKGDSLI----

Query:  ------------GDNSTAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVAT-SADGGSSGSSSAGAKRPRVLIPSQ
                    GD S AVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQ LVVMDGVAT S DGGSSGSSSAGAKRPRVLIPSQ
Subjt:  ------------GDNSTAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVAT-SADGGSSGSSSAGAKRPRVLIPSQ

Query:  STAVAVASAAAASHASTSNGTNRPSFETTSNHQDASFKKSLPGKVRAPAMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVDDKNAFPSLSHL
               SAAAA+ ASTSN T   SFETTS+HQDASFKKSLPG VRAPA+FR HRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG DDKNAFPS+SHL
Subjt:  STAVAVASAAAASHASTSNGTNRPSFETTSNHQDASFKKSLPGKVRAPAMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVDDKNAFPSLSHL

Query:  HLESGNHHRE
        HL+SGNHHRE
Subjt:  HLESGNHHRE

XP_022138928.1 protein LATERAL ROOT PRIMORDIUM 1 [Momordica charantia]3.0e-11374.92Show/hide
Query:  MLSLRDVLLIAPTSSSLHPH-THILSSD-------PSSAALGVGVGIYPLFAAAPCFPPPNHAPEELADGT--RSLENVKRTQDFGFGKGDSLI------
        ML LRDVL IAPT SSLH   T I+SSD       PSSAALGV VGI+PL AA PC P P   P   A+ +  R ++N+KRTQDFGFGKGDSLI      
Subjt:  MLSLRDVLLIAPTSSSLHPH-THILSSD-------PSSAALGVGVGIYPLFAAAPCFPPPNHAPEELADGT--RSLENVKRTQDFGFGKGDSLI------

Query:  ---------GDNSTAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVAT-SADGGSSGSSSAGAKRPRVLIPSQSTA
                 GD+S  VCRDCGNRAKKEC+YRRCRTCCKGRGNHCSTHVKSTWV AARRRERQ LVVMDGVAT S DGGSSGSSSAGAKRPRVLIPSQST 
Subjt:  ---------GDNSTAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVAT-SADGGSSGSSSAGAKRPRVLIPSQSTA

Query:  VAVASAAAASHASTSNGTNRPSFETTSNHQDASFKKSLPGKVRAPAMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVDDKNAFPSLSHLHLE
         A A+AA+ASHASTSN T   SFET+SNHQDASFKKSLPG+VRAPA+FR HRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG+DDKN FPS+SHLHLE
Subjt:  VAVASAAAASHASTSNGTNRPSFETTSNHQDASFKKSLPGKVRAPAMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVDDKNAFPSLSHLHLE

Query:  SGNHHRE
        SGNHH +
Subjt:  SGNHHRE

XP_038892899.1 protein LATERAL ROOT PRIMORDIUM 1 [Benincasa hispida]6.6e-11674.76Show/hide
Query:  MLSLRDVLLIAPTSSSLHPHTHILSSD-------PSSAALGVGVGIYPLFAAAPCFPP----PNHAPEELADGTRSLENVKRTQDFGFGKGDSLI-----
        ML LRDVL IAPT SSLH  T I+SSD       PSSAALGV VGI+PL  A PC PP    PN   +++ D +RSLEN+KRTQDFGFGKGDSL+     
Subjt:  MLSLRDVLLIAPTSSSLHPHTHILSSD-------PSSAALGVGVGIYPLFAAAPCFPP----PNHAPEELADGTRSLENVKRTQDFGFGKGDSLI-----

Query:  -----------GDNSTAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVAT-SADGGSSGSSSAGAKRPRVLIPSQS
                   GD S AVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQ LVVMDGVAT S DGGSSGSSSAGAKRPRVLIPSQS
Subjt:  -----------GDNSTAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVAT-SADGGSSGSSSAGAKRPRVLIPSQS

Query:  TAVAVASAAAASHASTSNGTNRPSFETTSNHQDASFKKSLPGKVRAPAMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVDDKNAFPSLSHLH
        TA A A       ASTSN T   SFETTS+HQDASFKKSLPG VRAPA+FR HRVTAI+SGEGELAYQATVNIGGHVFKGFLYDQG DDKNAFPS+SHLH
Subjt:  TAVAVASAAAASHASTSNGTNRPSFETTSNHQDASFKKSLPGKVRAPAMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVDDKNAFPSLSHLH

Query:  LESGNHHRE
        L+SGNHHR+
Subjt:  LESGNHHRE

TrEMBL top hitse value%identityAlignment
A0A0A0KWX6 Uncharacterized protein1.4e-11674.84Show/hide
Query:  MLSLRDVLLIAPTSSSLHPHTHILSSD-------PSSAALGVGVGIYPLFAAAPCFPPP-----NHAPEELADGTRSLENVKRTQDFGFGKGDSLI----
        ML LRDVL IAPT SSLH  T I+SSD       PSS ALGV VGI+PL AA PC PP      NH P+++ D TR+ +N+KRTQDFGFGKG+SLI    
Subjt:  MLSLRDVLLIAPTSSSLHPHTHILSSD-------PSSAALGVGVGIYPLFAAAPCFPPP-----NHAPEELADGTRSLENVKRTQDFGFGKGDSLI----

Query:  ------------GDNSTAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVAT-SADGGSSGSSSAGAKRPRVLIPSQ
                    GD S AVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQ LVVMDGVAT S DGGSSGSSSAGAKRPRVLIPSQ
Subjt:  ------------GDNSTAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVAT-SADGGSSGSSSAGAKRPRVLIPSQ

Query:  STAVAVASAAAASHASTSNGTNRPSFETTSNHQDASFKKSLPGKVRAPAMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVDDKNAFPSLSHL
               SAAAA+ ASTSN T   SFETTS+HQDASFKKSLPG VRAPA+FR HRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG DDKNAFPS+SHL
Subjt:  STAVAVASAAAASHASTSNGTNRPSFETTSNHQDASFKKSLPGKVRAPAMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVDDKNAFPSLSHL

Query:  HLESGNHHRE
        HL+SGNHHRE
Subjt:  HLESGNHHRE

A0A1S3BFS5 protein LATERAL ROOT PRIMORDIUM 11.4e-11674.84Show/hide
Query:  MLSLRDVLLIAPTSSSLHPHTHILSSD-------PSSAALGVGVGIYPLFAAAPCFPPP-----NHAPEELADGTRSLENVKRTQDFGFGKGDSLI----
        ML LRDVL IAPT SSLH  T I+SSD       PSS ALGV VGI+PL AA PC PP      NH P+++ D TR+ +N+KRTQDFGFGKG+SLI    
Subjt:  MLSLRDVLLIAPTSSSLHPHTHILSSD-------PSSAALGVGVGIYPLFAAAPCFPPP-----NHAPEELADGTRSLENVKRTQDFGFGKGDSLI----

Query:  ------------GDNSTAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVAT-SADGGSSGSSSAGAKRPRVLIPSQ
                    GD S AVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQ LVVMDGVAT S DGGSSGSSSAGAKRPRVLIPSQ
Subjt:  ------------GDNSTAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVAT-SADGGSSGSSSAGAKRPRVLIPSQ

Query:  STAVAVASAAAASHASTSNGTNRPSFETTSNHQDASFKKSLPGKVRAPAMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVDDKNAFPSLSHL
               SAAAA+ ASTSN T   SFETTS+HQDASFKKSLPG VRAPA+FR HRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG DDKNAFPS+SHL
Subjt:  STAVAVASAAAASHASTSNGTNRPSFETTSNHQDASFKKSLPGKVRAPAMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVDDKNAFPSLSHL

Query:  HLESGNHHRE
        HL+SGNHHRE
Subjt:  HLESGNHHRE

A0A5D3CCT8 Protein LATERAL ROOT PRIMORDIUM 11.9e-11371.17Show/hide
Query:  MLSLRDVLLIAPTSSSLHPHTHILSSD-------PSSAALGVGVGIYPLFAAAPCFPPP-----NHAPEELADGTRSLENVKRTQDFGFGKGDSLI----
        ML LRDVL IAPT SSLH  T I+SSD       PSS ALGV VGI+PL AA PC PP      NH P+++ D TR+ +N+KRTQDFGFGKG+SLI    
Subjt:  MLSLRDVLLIAPTSSSLHPHTHILSSD-------PSSAALGVGVGIYPLFAAAPCFPPP-----NHAPEELADGTRSLENVKRTQDFGFGKGDSLI----

Query:  ------------GDNSTAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVAT-SADGGSSGSSSAGAKRPRVLIPSQ
                    GD S AVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQ LVVMDGVAT S DGGSSGSSSAGAKRPRVLIPSQ
Subjt:  ------------GDNSTAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVAT-SADGGSSGSSSAGAKRPRVLIPSQ

Query:  STAVAVASAAAASHASTSNGTNRPSFETTSNHQ----------------DASFKKSLPGKVRAPAMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLY
               SAAAA+ ASTSN T   SFETTS+HQ                DASFKKSLPG VRAPA+FR HRVTAISSGEGELAYQATVNIGGHVFKGFLY
Subjt:  STAVAVASAAAASHASTSNGTNRPSFETTSNHQ----------------DASFKKSLPGKVRAPAMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLY

Query:  DQGVDDKNAFPSLSHLHLESGNHHRE
        DQG DDKNAFPS+SHLHL+SGNHHRE
Subjt:  DQGVDDKNAFPSLSHLHLESGNHHRE

A0A6J1CEG6 protein LATERAL ROOT PRIMORDIUM 11.5e-11374.92Show/hide
Query:  MLSLRDVLLIAPTSSSLHPH-THILSSD-------PSSAALGVGVGIYPLFAAAPCFPPPNHAPEELADGT--RSLENVKRTQDFGFGKGDSLI------
        ML LRDVL IAPT SSLH   T I+SSD       PSSAALGV VGI+PL AA PC P P   P   A+ +  R ++N+KRTQDFGFGKGDSLI      
Subjt:  MLSLRDVLLIAPTSSSLHPH-THILSSD-------PSSAALGVGVGIYPLFAAAPCFPPPNHAPEELADGT--RSLENVKRTQDFGFGKGDSLI------

Query:  ---------GDNSTAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVAT-SADGGSSGSSSAGAKRPRVLIPSQSTA
                 GD+S  VCRDCGNRAKKEC+YRRCRTCCKGRGNHCSTHVKSTWV AARRRERQ LVVMDGVAT S DGGSSGSSSAGAKRPRVLIPSQST 
Subjt:  ---------GDNSTAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVAT-SADGGSSGSSSAGAKRPRVLIPSQSTA

Query:  VAVASAAAASHASTSNGTNRPSFETTSNHQDASFKKSLPGKVRAPAMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVDDKNAFPSLSHLHLE
         A A+AA+ASHASTSN T   SFET+SNHQDASFKKSLPG+VRAPA+FR HRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG+DDKN FPS+SHLHLE
Subjt:  VAVASAAAASHASTSNGTNRPSFETTSNHQDASFKKSLPGKVRAPAMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVDDKNAFPSLSHLHLE

Query:  SGNHHRE
        SGNHH +
Subjt:  SGNHHRE

A0A6J1GXY1 protein LATERAL ROOT PRIMORDIUM 1-like4.3e-11374.1Show/hide
Query:  MLSLRDVLLIAPTSSSLHPHTHILSSD-------PSSAALGVGVGIYPLFAAAPCF-PPPNHAPEELADGTRSLENVKRTQDFGFGKGDSLI--------
        ML LRDVL IAPT SSLH HT I+SSD       PSS ALGV VGI+PL AA PC  PPPN  P+EL+D +RSLEN+KRTQDFGFGKGDSLI        
Subjt:  MLSLRDVLLIAPTSSSLHPHTHILSSD-------PSSAALGVGVGIYPLFAAAPCF-PPPNHAPEELADGTRSLENVKRTQDFGFGKGDSLI--------

Query:  --------GDNSTAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVATSADGGSSGSSSAGAKRPRVLIPSQSTAVA
                GD S  VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPA+RRRERQ LVVMDGVATS   GSSGSSSAGAKRP+VLIPSQ+TA A
Subjt:  --------GDNSTAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVATSADGGSSGSSSAGAKRPRVLIPSQSTAVA

Query:  VASAAAASHASTSNGTNRPSFETTSNHQDASFKKSLPGKVRAPAMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVDDKNAFPSLSHLHLESG
         A       ASTSN T   SFETTS+HQDASFKKSLPG+V+APA+F+ HRVTAISSGEGEL YQATVNIGGHVFKGFLYDQG D KNA PS+SHLHLESG
Subjt:  VASAAAASHASTSNGTNRPSFETTSNHQDASFKKSLPGKVRAPAMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVDDKNAFPSLSHLHLESG

Query:  NHHRE
        NH R+
Subjt:  NHHRE

SwissProt top hitse value%identityAlignment
O65517 Protein SHI RELATED SEQUENCE 26.8e-3146.78Show/hide
Query:  TAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVATSADGGSSGSSSAGAKRPRVLIPSQSTAVAVASAAAASHAST
        T  CRDCGN+AKK+C + RCRTCCK RG  CSTHV+STW+P ARRRERQ  + M     S  GG  GS S GA      IP +     +          T
Subjt:  TAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVATSADGGSSGSSSAGAKRPRVLIPSQSTAVAVASAAAASHAST

Query:  SNGTNRPSFETTSNHQDASFKKSLPGKVRAPAMFRFHRVTAI-SSGEGELAYQATVNIGGHVFKGFLYDQG
        S+ +  PS        +ASF    PG+V + A+FR  +++ +   G+G+ AYQ TVNIGGH+FKG LYDQG
Subjt:  SNGTNRPSFETTSNHQDASFKKSLPGKVRAPAMFRFHRVTAI-SSGEGELAYQATVNIGGHVFKGFLYDQG

Q94CK9 Protein LATERAL ROOT PRIMORDIUM 13.8e-5044.19Show/hide
Query:  MLSLRDVLLIAPTSSSLHPHTHILS-----SDPSSAALGVGVGIYPLFAAAPCFPPPNHAPEELADGTRSLEN-----------VKRTQDFGFGKGDSLI
        M+ LRDV L+AP     H +  ++S     +  ++AA  +GVG+ PL  A         +        R  +N            K T     G   +  
Subjt:  MLSLRDVLLIAPTSSSLHPHTHILS-----SDPSSAALGVGVGIYPLFAAAPCFPPPNHAPEELADGTRSLEN-----------VKRTQDFGFGKGDSLI

Query:  GDNS----TAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVATSADGGSSGSSSAGAKRPRVLIPSQSTAVAVASA
        G  S    TA C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV AARRRERQ +        +   GSS S+S+G K+PR++   Q         
Subjt:  GDNS----TAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVATSADGGSSGSSSAGAKRPRVLIPSQSTAVAVASA

Query:  AAASHASTSNGTNRPSFETTSNHQD-ASFKKSLPGKVRAPAMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVDDKNAFPSLSHLHL-ESGNH
         A SH STSN T   SFET+S+ QD    +++ PG+VRA A+F+  RVTA+  G+ E AYQA V IGGHVFKGFLYDQG++ K  FPS+S LHL  S N+
Subjt:  AAASHASTSNGTNRPSFETTSNHQD-ASFKKSLPGKVRAPAMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVDDKNAFPSLSHLHL-ESGNH

Query:  H
        H
Subjt:  H

Q9M2U4 Protein SHI RELATED SEQUENCE 65.5e-3343.68Show/hide
Query:  IGDNSTA---VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVATSADGGSSGSSSAGAKRPRVLIPSQSTAVAVASA
        + DN+T    VCRDCGNRAKKEC + RCRTCCK RG +C THVKSTW+P++  R                     SSS   ++ ++ I  QS+       
Subjt:  IGDNSTA---VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVATSADGGSSGSSSAGAKRPRVLIPSQSTAVAVASA

Query:  AAASHASTSNGTNRPSFETTSNHQDASFKKSLPGKVRAPAMFRFHRVTAISSGE-GELAYQATVNIGGHVFKGFLYDQGVDDKNAFPSLS
                    N     TT++ Q+  F++ LPGK+ APA+F+  RVTAIS+ E  E+ YQATV I GH+FKGFL+  GVD   AFP LS
Subjt:  AAASHASTSNGTNRPSFETTSNHQDASFKKSLPGKVRAPAMFRFHRVTAISSGE-GELAYQATVNIGGHVFKGFLYDQGVDDKNAFPSLS

Q9SD40 Protein SHI RELATED SEQUENCE 11.6e-2736.21Show/hide
Query:  DPSSAALGVGVGIYPLFAAAPCFPPPNHAPEELADGTRSLENVKRTQDFGFGKGDSLIGDNSTAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKST
        D  S+A G+GVG            P NH   +++ G  S     R       +     G +    C+DCGN+AKK+C + RCRTCCK RG  CSTHV+ST
Subjt:  DPSSAALGVGVGIYPLFAAAPCFPPPNHAPEELADGTRSLENVKRTQDFGFGKGDSLIGDNSTAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKST

Query:  WVPAARRRERQTLVVMDGVATSADGGSSGSSSAGAKRPRVLIPSQSTAVAVASAAAASHASTSNGTNRPSFETTSNHQDASFKKSLPGKVRAPAMFRFHR
        WVPAA+RRERQ  +      T    G S       KR R  +P+ S+++      + S     N                      P +V + A+FR  R
Subjt:  WVPAARRRERQTLVVMDGVATSADGGSSGSSSAGAKRPRVLIPSQSTAVAVASAAAASHASTSNGTNRPSFETTSNHQDASFKKSLPGKVRAPAMFRFHR

Query:  VTAISSGEGELAYQATVNIGGHVFKGFLYDQG
        V+++  GE E AYQ  V+IGGH+FKG LYD G
Subjt:  VTAISSGEGELAYQATVNIGGHVFKGFLYDQG

Q9XGX0 Protein SHORT INTERNODES7.7e-2744.51Show/hide
Query:  CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVATSADGGSSGSSSAGAKRPRVLIPSQSTAVAVASAAAASHASTSNG
        C+DCGN++KK+C + RCRTCCK RG  C THVKSTWVPAA+RRERQ   +  G      GGS        KR R  IP++ST++A               
Subjt:  CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVATSADGGSSGSSSAGAKRPRVLIPSQSTAVAVASAAAASHASTSNG

Query:  TNRPSFETTSNHQDASFKKSLPGKVRAPAMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVDDKNA
        T  PS   TS  +  +F    P +V + A+FR  RV+++   E E AY+  V+IGGHVFKG LYDQG  ++++
Subjt:  TNRPSFETTSNHQDASFKKSLPGKVRAPAMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVDDKNA

Arabidopsis top hitse value%identityAlignment
AT3G54430.1 SHI-related sequence 63.9e-3443.68Show/hide
Query:  IGDNSTA---VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVATSADGGSSGSSSAGAKRPRVLIPSQSTAVAVASA
        + DN+T    VCRDCGNRAKKEC + RCRTCCK RG +C THVKSTW+P++  R                     SSS   ++ ++ I  QS+       
Subjt:  IGDNSTA---VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVATSADGGSSGSSSAGAKRPRVLIPSQSTAVAVASA

Query:  AAASHASTSNGTNRPSFETTSNHQDASFKKSLPGKVRAPAMFRFHRVTAISSGE-GELAYQATVNIGGHVFKGFLYDQGVDDKNAFPSLS
                    N     TT++ Q+  F++ LPGK+ APA+F+  RVTAIS+ E  E+ YQATV I GH+FKGFL+  GVD   AFP LS
Subjt:  AAASHASTSNGTNRPSFETTSNHQDASFKKSLPGKVRAPAMFRFHRVTAISSGE-GELAYQATVNIGGHVFKGFLYDQGVDDKNAFPSLS

AT4G36260.1 Lateral root primordium (LRP) protein-related4.8e-3246.78Show/hide
Query:  TAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVATSADGGSSGSSSAGAKRPRVLIPSQSTAVAVASAAAASHAST
        T  CRDCGN+AKK+C + RCRTCCK RG  CSTHV+STW+P ARRRERQ  + M     S  GG  GS S GA      IP +     +          T
Subjt:  TAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVATSADGGSSGSSSAGAKRPRVLIPSQSTAVAVASAAAASHAST

Query:  SNGTNRPSFETTSNHQDASFKKSLPGKVRAPAMFRFHRVTAI-SSGEGELAYQATVNIGGHVFKGFLYDQG
        S+ +  PS        +ASF    PG+V + A+FR  +++ +   G+G+ AYQ TVNIGGH+FKG LYDQG
Subjt:  SNGTNRPSFETTSNHQDASFKKSLPGKVRAPAMFRFHRVTAI-SSGEGELAYQATVNIGGHVFKGFLYDQG

AT5G12330.1 Lateral root primordium (LRP) protein-related2.7e-5144.19Show/hide
Query:  MLSLRDVLLIAPTSSSLHPHTHILS-----SDPSSAALGVGVGIYPLFAAAPCFPPPNHAPEELADGTRSLEN-----------VKRTQDFGFGKGDSLI
        M+ LRDV L+AP     H +  ++S     +  ++AA  +GVG+ PL  A         +        R  +N            K T     G   +  
Subjt:  MLSLRDVLLIAPTSSSLHPHTHILS-----SDPSSAALGVGVGIYPLFAAAPCFPPPNHAPEELADGTRSLEN-----------VKRTQDFGFGKGDSLI

Query:  GDNS----TAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVATSADGGSSGSSSAGAKRPRVLIPSQSTAVAVASA
        G  S    TA C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV AARRRERQ +        +   GSS S+S+G K+PR++   Q         
Subjt:  GDNS----TAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVATSADGGSSGSSSAGAKRPRVLIPSQSTAVAVASA

Query:  AAASHASTSNGTNRPSFETTSNHQD-ASFKKSLPGKVRAPAMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVDDKNAFPSLSHLHL-ESGNH
         A SH STSN T   SFET+S+ QD    +++ PG+VRA A+F+  RVTA+  G+ E AYQA V IGGHVFKGFLYDQG++ K  FPS+S LHL  S N+
Subjt:  AAASHASTSNGTNRPSFETTSNHQD-ASFKKSLPGKVRAPAMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVDDKNAFPSLSHLHL-ESGNH

Query:  H
        H
Subjt:  H

AT5G12330.2 Lateral root primordium (LRP) protein-related2.7e-5144.19Show/hide
Query:  MLSLRDVLLIAPTSSSLHPHTHILS-----SDPSSAALGVGVGIYPLFAAAPCFPPPNHAPEELADGTRSLEN-----------VKRTQDFGFGKGDSLI
        M+ LRDV L+AP     H +  ++S     +  ++AA  +GVG+ PL  A         +        R  +N            K T     G   +  
Subjt:  MLSLRDVLLIAPTSSSLHPHTHILS-----SDPSSAALGVGVGIYPLFAAAPCFPPPNHAPEELADGTRSLEN-----------VKRTQDFGFGKGDSLI

Query:  GDNS----TAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVATSADGGSSGSSSAGAKRPRVLIPSQSTAVAVASA
        G  S    TA C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV AARRRERQ +        +   GSS S+S+G K+PR++   Q         
Subjt:  GDNS----TAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVATSADGGSSGSSSAGAKRPRVLIPSQSTAVAVASA

Query:  AAASHASTSNGTNRPSFETTSNHQD-ASFKKSLPGKVRAPAMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVDDKNAFPSLSHLHL-ESGNH
         A SH STSN T   SFET+S+ QD    +++ PG+VRA A+F+  RVTA+  G+ E AYQA V IGGHVFKGFLYDQG++ K  FPS+S LHL  S N+
Subjt:  AAASHASTSNGTNRPSFETTSNHQD-ASFKKSLPGKVRAPAMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVDDKNAFPSLSHLHL-ESGNH

Query:  H
        H
Subjt:  H

AT5G12330.4 Lateral root primordium (LRP) protein-related2.7e-5144.19Show/hide
Query:  MLSLRDVLLIAPTSSSLHPHTHILS-----SDPSSAALGVGVGIYPLFAAAPCFPPPNHAPEELADGTRSLEN-----------VKRTQDFGFGKGDSLI
        M+ LRDV L+AP     H +  ++S     +  ++AA  +GVG+ PL  A         +        R  +N            K T     G   +  
Subjt:  MLSLRDVLLIAPTSSSLHPHTHILS-----SDPSSAALGVGVGIYPLFAAAPCFPPPNHAPEELADGTRSLEN-----------VKRTQDFGFGKGDSLI

Query:  GDNS----TAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVATSADGGSSGSSSAGAKRPRVLIPSQSTAVAVASA
        G  S    TA C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV AARRRERQ +        +   GSS S+S+G K+PR++   Q         
Subjt:  GDNS----TAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVATSADGGSSGSSSAGAKRPRVLIPSQSTAVAVASA

Query:  AAASHASTSNGTNRPSFETTSNHQD-ASFKKSLPGKVRAPAMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVDDKNAFPSLSHLHL-ESGNH
         A SH STSN T   SFET+S+ QD    +++ PG+VRA A+F+  RVTA+  G+ E AYQA V IGGHVFKGFLYDQG++ K  FPS+S LHL  S N+
Subjt:  AAASHASTSNGTNRPSFETTSNHQD-ASFKKSLPGKVRAPAMFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVDDKNAFPSLSHLHL-ESGNH

Query:  H
        H
Subjt:  H


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAGTCTCAGAGATGTTCTGTTAATCGCTCCGACCTCTTCTTCTCTTCACCCCCACACCCACATCCTTTCCTCCGATCCTTCCTCCGCCGCTCTCGGCGTCGGCGT
CGGCATTTACCCACTTTTTGCGGCCGCCCCCTGTTTCCCGCCCCCCAATCACGCGCCGGAGGAACTCGCCGACGGCACCCGGAGTTTGGAGAATGTGAAAAGGACTCAAG
ATTTTGGGTTCGGGAAAGGGGATTCGCTCATCGGCGATAACTCCACGGCGGTTTGTAGGGACTGTGGAAACAGAGCAAAGAAGGAGTGCGAGTATCGCCGGTGCCGGACT
TGCTGTAAGGGGCGTGGGAATCATTGCTCCACTCACGTGAAGAGCACGTGGGTTCCGGCGGCTCGCCGCCGTGAGCGGCAGACGTTGGTGGTGATGGACGGCGTCGCCAC
CAGTGCCGACGGTGGGTCCTCTGGCTCCTCCTCTGCCGGTGCGAAACGGCCTAGAGTTTTGATTCCTTCACAGAGCACTGCCGTCGCCGTCGCCTCCGCCGCCGCCGCCT
CTCACGCTTCCACTTCCAATGGTACGAACCGACCGAGCTTTGAAACAACTTCTAACCATCAAGATGCAAGCTTCAAGAAGTCGTTACCGGGGAAAGTTCGGGCTCCGGCC
ATGTTCCGGTTCCATAGAGTGACAGCCATTAGCAGTGGTGAAGGTGAGTTAGCTTACCAAGCAACAGTCAACATTGGTGGCCATGTCTTCAAAGGCTTTCTCTATGATCA
AGGAGTTGATGACAAAAATGCATTCCCATCTCTTTCACACCTTCATTTGGAAAGTGGTAACCATCACAGGGAATAG
mRNA sequenceShow/hide mRNA sequence
TAATTATTAGTTCCACTTCATCATCTGCTTCATCTTCTCCATTTCTCTCTTTCTCTCTCCTCTGTTACTGTGAATTTTGAGAGAAAATTCCATTCCACCAACACAATTCC
CATTGCTTTCAATCTAAGAAATTTTATTCTAACCATTCGCCACAAATCTCAAACACCCTTTTCCGATTTCAATCCCCACAGCAATGTTGAGTCTCAGAGATGTTCTGTTA
ATCGCTCCGACCTCTTCTTCTCTTCACCCCCACACCCACATCCTTTCCTCCGATCCTTCCTCCGCCGCTCTCGGCGTCGGCGTCGGCATTTACCCACTTTTTGCGGCCGC
CCCCTGTTTCCCGCCCCCCAATCACGCGCCGGAGGAACTCGCCGACGGCACCCGGAGTTTGGAGAATGTGAAAAGGACTCAAGATTTTGGGTTCGGGAAAGGGGATTCGC
TCATCGGCGATAACTCCACGGCGGTTTGTAGGGACTGTGGAAACAGAGCAAAGAAGGAGTGCGAGTATCGCCGGTGCCGGACTTGCTGTAAGGGGCGTGGGAATCATTGC
TCCACTCACGTGAAGAGCACGTGGGTTCCGGCGGCTCGCCGCCGTGAGCGGCAGACGTTGGTGGTGATGGACGGCGTCGCCACCAGTGCCGACGGTGGGTCCTCTGGCTC
CTCCTCTGCCGGTGCGAAACGGCCTAGAGTTTTGATTCCTTCACAGAGCACTGCCGTCGCCGTCGCCTCCGCCGCCGCCGCCTCTCACGCTTCCACTTCCAATGGTACGA
ACCGACCGAGCTTTGAAACAACTTCTAACCATCAAGATGCAAGCTTCAAGAAGTCGTTACCGGGGAAAGTTCGGGCTCCGGCCATGTTCCGGTTCCATAGAGTGACAGCC
ATTAGCAGTGGTGAAGGTGAGTTAGCTTACCAAGCAACAGTCAACATTGGTGGCCATGTCTTCAAAGGCTTTCTCTATGATCAAGGAGTTGATGACAAAAATGCATTCCC
ATCTCTTTCACACCTTCATTTGGAAAGTGGTAACCATCACAGGGAATAGACACATTCCTCTTCTACTTTCTTGTCCAATTCTCCCTCCTGTGAATGGTTACCCGAAAACT
CGATCTCGGCCCCTTCGGAAAGATCATATATCTTCTAGGGTTCAGTGATCTCTCTTATGCTATCTATAAGATCTATATAGTTACTTTTCATGCTGGTATTGCAATGAATG
TGCACTAAATAGAACAAAAAAGAGCAAGAATTGTAATAGGATATTCTATTTTATAGTTTTCTAGCCTTGAAAGTTGGGGTTAGTGTAAAATTTCTCAAGTCCAATGATAG
TTTGATACTGATCTTCTGTATATTGCTAAGATGTGTAACTTTCATCTATCCAAACTTCATTTATCATCTGCTAAAGCAAGCTAGTTGTGGATATGAGAGTTCAACCTCTT
GTTTGATCGTCTATCTCGAAAAGTTTTACGATACCAATGTAATCGCTGCTGGTCTTCGAACAATAGAGCACCAGGCATCTTCTCATGATATGGTGGAACAGACCAGATGT
ATGCAATGTTACTTCTTTCTACATTACCATCTCC
Protein sequenceShow/hide protein sequence
MLSLRDVLLIAPTSSSLHPHTHILSSDPSSAALGVGVGIYPLFAAAPCFPPPNHAPEELADGTRSLENVKRTQDFGFGKGDSLIGDNSTAVCRDCGNRAKKECEYRRCRT
CCKGRGNHCSTHVKSTWVPAARRRERQTLVVMDGVATSADGGSSGSSSAGAKRPRVLIPSQSTAVAVASAAAASHASTSNGTNRPSFETTSNHQDASFKKSLPGKVRAPA
MFRFHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVDDKNAFPSLSHLHLESGNHHRE