; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0020970 (gene) of Chayote v1 genome

Gene IDSed0020970
OrganismSechium edule (Chayote v1)
DescriptionTranscription termination factor like
Genome locationLG05:26688496..26689195
RNA-Seq ExpressionSed0020970
SyntenySed0020970
Gene Ontology termsGO:0005737 - cytoplasm (cellular component)
GO:0012505 - endomembrane system (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0098588 - bounding membrane of organelle (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581607.1 hypothetical protein SDJN03_21609, partial [Cucurbita argyrosperma subsp. sororia]1.9e-2272.53Show/hide
Query:  MLPILETNAGEFFFKTAVFVLVQFLVYLILSKSSNLFSNDHKLRSLSFKPARSVSIRRFLAALSDMPPGGEISPSSRAPTPSPVRPGRPVD
        M+ ILE +    F K A+FV VQ LVYLILSKSSNLFSND KLRSLSFKPARSVSIRR LAALSD+PPGGE+SPSS   TPS VR  R  D
Subjt:  MLPILETNAGEFFFKTAVFVLVQFLVYLILSKSSNLFSNDHKLRSLSFKPARSVSIRRFLAALSDMPPGGEISPSSRAPTPSPVRPGRPVD

KAG6606858.1 hypothetical protein SDJN03_00200, partial [Cucurbita argyrosperma subsp. sororia]5.5e-2572.83Show/hide
Query:  MLPILETNAGEFFFKTAVFVLVQFLVYLILSKSSNLFSNDHKLRSLSFKPARSVSIRRFLAALSDMPPGGEISPSSRAPTPSPVRPGRPVDG
        M+PILE +AGEFF K A+F+LVQ LVY ILS+SS+LFS D KL+SLSFKPARSVSIRRFLAALSDMP GGE+SPSSR  TPSP+      DG
Subjt:  MLPILETNAGEFFFKTAVFVLVQFLVYLILSKSSNLFSNDHKLRSLSFKPARSVSIRRFLAALSDMPPGGEISPSSRAPTPSPVRPGRPVDG

XP_008461750.1 PREDICTED: uncharacterized protein LOC103500281 [Cucumis melo]2.7e-2475Show/hide
Query:  MLPILETNAGEFFFKTAVFVLVQFLVYLILSKSSNLFSNDHKLRSLSFKPARSVSIRRFLAALSDMPPGGEISPSSRAPTPSPVRPGRPVDG
        M PI ET+AGE F + A+FV VQ LVYLILSKSSNLFSND KLRSLSFKPARSVSIRRFLAALSD+PPGGE+SPSS       VR GR  DG
Subjt:  MLPILETNAGEFFFKTAVFVLVQFLVYLILSKSSNLFSNDHKLRSLSFKPARSVSIRRFLAALSDMPPGGEISPSSRAPTPSPVRPGRPVDG

XP_011651805.2 uncharacterized protein LOC105434941 [Cucumis sativus]1.9e-2571.74Show/hide
Query:  MLPILETNAGEFFFKTAVFVLVQFLVYLILSKSSNLFSNDHKLRSLSFKPARSVSIRRFLAALSDMPPGGEISPSSRAPTPSPVRPGRPVDG
        M PI +T+AGE F + A+FV +Q LVYLILSKSSNLFSND K+RSLSFKPARSVSIRRFLAALSD+PPGGE+SPS++  TPS  R  R  DG
Subjt:  MLPILETNAGEFFFKTAVFVLVQFLVYLILSKSSNLFSNDHKLRSLSFKPARSVSIRRFLAALSDMPPGGEISPSSRAPTPSPVRPGRPVDG

XP_038905322.1 uncharacterized protein LOC120091388 [Benincasa hispida]6.0e-2472.83Show/hide
Query:  MLPILETNAGEFFFKTAVFVLVQFLVYLILSKSSNLFSNDHKLRSLSFKPARSVSIRRFLAALSDMPPGGEISPSSRAPTPSPVRPGRPVDG
        M PILE++  E F K A+F  VQ LVYLILSKSSNLFSND KLRSLSFKPARSVSIRRFLAALSD+PPGGEISP+ R  TPS  R     DG
Subjt:  MLPILETNAGEFFFKTAVFVLVQFLVYLILSKSSNLFSNDHKLRSLSFKPARSVSIRRFLAALSDMPPGGEISPSSRAPTPSPVRPGRPVDG

TrEMBL top hitse value%identityAlignment
A0A1S3CFW1 uncharacterized protein LOC1035002811.3e-2475Show/hide
Query:  MLPILETNAGEFFFKTAVFVLVQFLVYLILSKSSNLFSNDHKLRSLSFKPARSVSIRRFLAALSDMPPGGEISPSSRAPTPSPVRPGRPVDG
        M PI ET+AGE F + A+FV VQ LVYLILSKSSNLFSND KLRSLSFKPARSVSIRRFLAALSD+PPGGE+SPSS       VR GR  DG
Subjt:  MLPILETNAGEFFFKTAVFVLVQFLVYLILSKSSNLFSNDHKLRSLSFKPARSVSIRRFLAALSDMPPGGEISPSSRAPTPSPVRPGRPVDG

A0A218WLF6 uncharacterized protein LOC1161988358.5e-1663.29Show/hide
Query:  LPILETNA-GEFFFKTAVFVLVQFLVYLILSKSSNLFSNDHKLRSLSFKPARSVSIRRFLAALSDMPPGGEISPSSRAP
        + +++TN+ G+   K  +FVLVQ LVYLILSKSS++FS D   +SLSF+P RSVSIRRF+AALSDMP GGE SPS R+P
Subjt:  LPILETNA-GEFFFKTAVFVLVQFLVYLILSKSSNLFSNDHKLRSLSFKPARSVSIRRFLAALSDMPPGGEISPSSRAP

A0A5A7UC63 Uncharacterized protein1.3e-2475Show/hide
Query:  MLPILETNAGEFFFKTAVFVLVQFLVYLILSKSSNLFSNDHKLRSLSFKPARSVSIRRFLAALSDMPPGGEISPSSRAPTPSPVRPGRPVDG
        M PI ET+AGE F + A+FV VQ LVYLILSKSSNLFSND KLRSLSFKPARSVSIRRFLAALSD+PPGGE+SPSS       VR GR  DG
Subjt:  MLPILETNAGEFFFKTAVFVLVQFLVYLILSKSSNLFSNDHKLRSLSFKPARSVSIRRFLAALSDMPPGGEISPSSRAPTPSPVRPGRPVDG

A0A7J0FVM8 Uncharacterized protein3.2e-1563.1Show/hide
Query:  LETNAGEFFFKTAVFVLVQFLVYLILSKSSNLFSNDHKLRSLSFKPARSVSIRRFLAALSDMPPGGEISPSSRAPTPSPVRPGR
        +ET+ G+  FK  +F+LVQ LVYLILSKSSN+FS   ++RS SF+PARSVSIRR LA LSD+P GGE SPSSR    SP + GR
Subjt:  LETNAGEFFFKTAVFVLVQFLVYLILSKSSNLFSNDHKLRSLSFKPARSVSIRRFLAALSDMPPGGEISPSSRAPTPSPVRPGR

B9REM2 Uncharacterized protein2.5e-1565.79Show/hide
Query:  ILETNAGEFFFKTAVFVLVQFLVYLILSKSSNLFSNDHKLRSLSFKPARSVSIRRFLAALSDMPPGGEISPSSRAP
        I+E++ G+   K A+F LVQ LVY+ILSKSSN+FSN  K RS SFKPARSVSIRRFLAAL D+P  GE+SPS + P
Subjt:  ILETNAGEFFFKTAVFVLVQFLVYLILSKSSNLFSNDHKLRSLSFKPARSVSIRRFLAALSDMPPGGEISPSSRAP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G05575.1 unknown protein1.8e-1358.21Show/hide
Query:  KTAVFVLVQFLVYLILSKSSNLFSNDHKL-RSLSFKPARSVSIRRFLAALSDMPPGGEISPSSRAPT
        K ++F L+Q LVYLILSKSS++FS    + R+ SF+ ARS+SIRR LA L DMP GGE+SPS+  P+
Subjt:  KTAVFVLVQFLVYLILSKSSNLFSNDHKL-RSLSFKPARSVSIRRFLAALSDMPPGGEISPSSRAPT

AT2G31945.1 unknown protein6.7e-1351.9Show/hide
Query:  LETNAGEFFFKTAVFVLVQFLVYLILSKSSNLFSNDHKL-RSLSFKPARSVSIRRFLAALSDMPPGGEISPSSRAPTPS
        ++   G    K A+F LVQ LVYLIL KSS +F+  + L R+ SF+P RSVSIRR LAAL D+P G ++SPSS   + S
Subjt:  LETNAGEFFFKTAVFVLVQFLVYLILSKSSNLFSNDHKL-RSLSFKPARSVSIRRFLAALSDMPPGGEISPSSRAPTPS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGTTGCCGATTTTAGAAACCAACGCCGGCGAGTTTTTCTTCAAAACCGCCGTGTTTGTTCTGGTTCAATTTCTTGTCTATTTAATCCTCTCCAAATCTTCCAATCT
GTTCTCCAACGACCACAAATTGAGGTCTCTCAGCTTTAAACCCGCCAGATCCGTCAGTATTCGCCGCTTTCTCGCCGCTCTTTCCGATATGCCTCCCGGCGGAGAGATTT
CGCCGTCGTCCAGAGCTCCGACTCCGTCGCCTGTTCGCCCGGGACGCCCCGTTGACGGCGCCGGGTCTTTAGAGAATTGA
mRNA sequenceShow/hide mRNA sequence
CCCAATATTTGATCGAAAAGAGACATGGACCCTTCCCGGAATCTGCAAGCTCTGTGTTCCAAACATGGCGGCCAGACGGTCAAAGGGCAATACCTTCCCTCCTCAATAAA
ACCGGCTCTCAAATCTTCAATTTCTTCATCCAATTTCAATAAGCGATTCCGAATTACATCTCCATGATGTTGCCGATTTTAGAAACCAACGCCGGCGAGTTTTTCTTCAA
AACCGCCGTGTTTGTTCTGGTTCAATTTCTTGTCTATTTAATCCTCTCCAAATCTTCCAATCTGTTCTCCAACGACCACAAATTGAGGTCTCTCAGCTTTAAACCCGCCA
GATCCGTCAGTATTCGCCGCTTTCTCGCCGCTCTTTCCGATATGCCTCCCGGCGGAGAGATTTCGCCGTCGTCCAGAGCTCCGACTCCGTCGCCTGTTCGCCCGGGACGC
CCCGTTGACGGCGCCGGGTCTTTAGAGAATTGAGTCCGGTTTGGGTTGGGTAGCTATGTAAAGTGAACAGGTAATTTGTGAGATTAGAAGGGGTGGTTTTGTCATTTGTG
TTTGAGATTCTTTTTATTTCTCATTTGAATTATTCTTTTGTAATTGAAATTATTTATTTCATTGGTGCTTTTGACCATATTTTGGAGTTTTTAGTGTACAAAAAGCTTAA
ATGAGAATAATAAATTGGTTTGATTGTTGTTTGGTGGTAA
Protein sequenceShow/hide protein sequence
MMLPILETNAGEFFFKTAVFVLVQFLVYLILSKSSNLFSNDHKLRSLSFKPARSVSIRRFLAALSDMPPGGEISPSSRAPTPSPVRPGRPVDGAGSLEN