; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0020982 (gene) of Chayote v1 genome

Gene IDSed0020982
OrganismSechium edule (Chayote v1)
DescriptionAvrRpt-cleavage domain-containing protein
Genome locationLG06:41890057..41892648
RNA-Seq ExpressionSed0020982
SyntenySed0020982
Gene Ontology termsGO:0005886 - plasma membrane (cellular component)
InterPro domainsIPR008700 - RIN4, pathogenic type III effector avirulence factor Avr cleavage site
IPR040387 - RPM1-interacting protein 4/NOI4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573672.1 hypothetical protein SDJN03_27559, partial [Cucurbita argyrosperma subsp. sororia]3.0e-1967.95Show/hide
Query:  MASGYRGSTLPKFGEWDEKNPAAAQGFTVIFDRARDNKKNAGTSNNIEPEEN--QNKYQNKKHKPANKNHKHKHPRKQ
        M S +RGS+LPKFGEWDEK+PAAA+GFTVIFDRARD KKN GT NN+ P+EN  QN+Y++K H+ A KN K K+PRK+
Subjt:  MASGYRGSTLPKFGEWDEKNPAAAQGFTVIFDRARDNKKNAGTSNNIEPEEN--QNKYQNKKHKPANKNHKHKHPRKQ

XP_004135294.1 protein NOI4 [Cucumis sativus]9.6e-1864.63Show/hide
Query:  MASGYRGSTLPKFGEWDEKNPAAAQGFTVIFDRARDNKKN---AGTSNNIEPEENQNKYQNKKHKPANKNHKHKHPRKQKVW
        MAS  +G  LPKFG+WDE+NPAAA+GFTVIF+RARDNKKN   AGT NN+ P +N    Q++K++PA KN KHK+PRKQK W
Subjt:  MASGYRGSTLPKFGEWDEKNPAAAQGFTVIFDRARDNKKN---AGTSNNIEPEENQNKYQNKKHKPANKNHKHKHPRKQKVW

XP_022945363.1 RPM1-interacting protein 4-like [Cucurbita moschata]2.2e-2266.67Show/hide
Query:  MASGYRGSTLPKFGEWDEKNPAAAQGFTVIFDRARDNKKNAGTSNNIEPEEN--QNKYQNKKHKPANKNHKHKHPRKQKVWYSSLCF
        M S +RGS+LPKFGEWDEK+PAAA+GFTVIFDRARD KKN GT NN+ P+EN  QN+Y++K H+ A KN K K+PRK+K  +S LCF
Subjt:  MASGYRGSTLPKFGEWDEKNPAAAQGFTVIFDRARDNKKNAGTSNNIEPEEN--QNKYQNKKHKPANKNHKHKHPRKQKVWYSSLCF

XP_038892913.1 protein NOI4-like isoform X1 [Benincasa hispida]2.9e-2269.88Show/hide
Query:  RGSTLPKFGEWDEKNPAAAQGFTVIFDRARDNKKN---AGTSNNIEPEENQNKYQNKKHKPANKNHKHKHPRKQKVWYSSLCF
        +G  LPKFGEWDEKNPAAA+GFTVIFDRARDNKKN    GT NN+ P++NQN+YQNKKH+ A KNH+H++PRKQK W+   CF
Subjt:  RGSTLPKFGEWDEKNPAAAQGFTVIFDRARDNKKN---AGTSNNIEPEENQNKYQNKKHKPANKNHKHKHPRKQKVWYSSLCF

XP_038892914.1 protein NOI4-like isoform X2 [Benincasa hispida]4.9e-2270.73Show/hide
Query:  GSTLPKFGEWDEKNPAAAQGFTVIFDRARDNKKN---AGTSNNIEPEENQNKYQNKKHKPANKNHKHKHPRKQKVWYSSLCF
        G  LPKFGEWDEKNPAAA+GFTVIFDRARDNKKN    GT NN+ P++NQN+YQNKKH+ A KNH+H++PRKQK W+   CF
Subjt:  GSTLPKFGEWDEKNPAAAQGFTVIFDRARDNKKN---AGTSNNIEPEENQNKYQNKKHKPANKNHKHKHPRKQKVWYSSLCF

TrEMBL top hitse value%identityAlignment
A0A0A0KTF9 AvrRpt-cleavage domain-containing protein4.6e-1864.63Show/hide
Query:  MASGYRGSTLPKFGEWDEKNPAAAQGFTVIFDRARDNKKN---AGTSNNIEPEENQNKYQNKKHKPANKNHKHKHPRKQKVW
        MAS  +G  LPKFG+WDE+NPAAA+GFTVIF+RARDNKKN   AGT NN+ P +N    Q++K++PA KN KHK+PRKQK W
Subjt:  MASGYRGSTLPKFGEWDEKNPAAAQGFTVIFDRARDNKKN---AGTSNNIEPEENQNKYQNKKHKPANKNHKHKHPRKQKVW

A0A1S3BEY0 RPM1-interacting protein 4-like3.1e-1458.43Show/hide
Query:  MASGYRGSTLPKFGEWDEKNPAAAQGFTVIFDRARDNKKN---AGTSNNIEPEENQNKYQNKKHKPANK-NHKHKHPRKQKVWYSSLCF
        M S  +G  LPKFG+WDEKNPAAA+GFTVIF+RARDNKKN   AGT NN+ P +N    + +K +PA +   K K+PRKQK W S  CF
Subjt:  MASGYRGSTLPKFGEWDEKNPAAAQGFTVIFDRARDNKKN---AGTSNNIEPEENQNKYQNKKHKPANK-NHKHKHPRKQKVWYSSLCF

A0A5D3CUX8 RPM1-interacting protein 4-like2.9e-1258.75Show/hide
Query:  MASGYRGSTLPKFGEWDEKNPAAAQGFTVIFDRARDNKKN---AGTSNNIEPEENQNKYQNKKHKPANK-NHKHKHPRKQ
        M S  +G  LPKFG+WDEKNPAAA+GFTVIF+RARDNKKN   AGT NN+ P +N    + +K +PA +   K K+PRKQ
Subjt:  MASGYRGSTLPKFGEWDEKNPAAAQGFTVIFDRARDNKKN---AGTSNNIEPEENQNKYQNKKHKPANK-NHKHKHPRKQ

A0A6J1DEH9 RPM1-interacting protein 4-like2.6e-1358.02Show/hide
Query:  MASGYRGSTLPKFGEWDEKNPAAAQGFTVIFDRARDNKKNAG--TSNNIEPEENQNKYQNKKHKPANKNHKHKHPRKQKVW
        MASG  G TLPKFGEWD K+PA+A+GFT+IF++ARDNKKN G  TS  +  +    K QN+KH+ + KNHK++ PRK K W
Subjt:  MASGYRGSTLPKFGEWDEKNPAAAQGFTVIFDRARDNKKNAG--TSNNIEPEENQNKYQNKKHKPANKNHKHKHPRKQKVW

A0A6J1G0L7 RPM1-interacting protein 4-like1.1e-2266.67Show/hide
Query:  MASGYRGSTLPKFGEWDEKNPAAAQGFTVIFDRARDNKKNAGTSNNIEPEEN--QNKYQNKKHKPANKNHKHKHPRKQKVWYSSLCF
        M S +RGS+LPKFGEWDEK+PAAA+GFTVIFDRARD KKN GT NN+ P+EN  QN+Y++K H+ A KN K K+PRK+K  +S LCF
Subjt:  MASGYRGSTLPKFGEWDEKNPAAAQGFTVIFDRARDNKKNAGTSNNIEPEEN--QNKYQNKKHKPANKNHKHKHPRKQKVWYSSLCF

SwissProt top hitse value%identityAlignment
O22633 Protein NOI41.2e-0764.86Show/hide
Query:  RGSTLPKFGEWDEKNPAAAQGFTVIFDRARDNKKNAG
        +G  LPKFGEWD  +PA+A+GFTVIF++ARD KK  G
Subjt:  RGSTLPKFGEWDEKNPAAAQGFTVIFDRARDNKKNAG

Arabidopsis top hitse value%identityAlignment
AT3G48450.1 RPM1-interacting protein 4 (RIN4) family protein4.9e-1244.33Show/hide
Query:  MASGYRGSTLPKFGEWDEKNPAAAQGFTVIFDRARDNKKN-----AGTSNNIEPEENQNKYQNKKHKPANKNHKHKH-------PRKQKVWYSSLCF
        MA+G R   LPKFGEWD  NP +A+GFTVIF++ARD+KK      AG  + + P  N+   +N      N NH H H       PR +K W   LCF
Subjt:  MASGYRGSTLPKFGEWDEKNPAAAQGFTVIFDRARDNKKN-----AGTSNNIEPEENQNKYQNKKHKPANKNHKHKH-------PRKQKVWYSSLCF

AT5G55850.1 RPM1-interacting protein 4 (RIN4) family protein8.7e-0964.86Show/hide
Query:  RGSTLPKFGEWDEKNPAAAQGFTVIFDRARDNKKNAG
        +G  LPKFGEWD  +PA+A+GFTVIF++ARD KK  G
Subjt:  RGSTLPKFGEWDEKNPAAAQGFTVIFDRARDNKKNAG

AT5G55850.2 RPM1-interacting protein 4 (RIN4) family protein8.7e-0964.86Show/hide
Query:  RGSTLPKFGEWDEKNPAAAQGFTVIFDRARDNKKNAG
        +G  LPKFGEWD  +PA+A+GFTVIF++ARD KK  G
Subjt:  RGSTLPKFGEWDEKNPAAAQGFTVIFDRARDNKKNAG

AT5G55850.3 RPM1-interacting protein 4 (RIN4) family protein8.7e-0964.86Show/hide
Query:  RGSTLPKFGEWDEKNPAAAQGFTVIFDRARDNKKNAG
        +G  LPKFGEWD  +PA+A+GFTVIF++ARD KK  G
Subjt:  RGSTLPKFGEWDEKNPAAAQGFTVIFDRARDNKKNAG

AT5G63270.1 RPM1-interacting protein 4 (RIN4) family protein9.3e-1149.3Show/hide
Query:  RGSTLPKFGEWDEKNPAAAQGFTVIFDRARDNKK-----NAGTSNNIEPEENQNKYQNKKHKPANKNHKHK
        +G  LPKFGEWD  NPA+A+GFTVIF +A D KK      AG ++ + P+ NQN  QN  H   N   K+K
Subjt:  RGSTLPKFGEWDEKNPAAAQGFTVIFDRARDNKK-----NAGTSNNIEPEENQNKYQNKKHKPANKNHKHK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCAGGTTATAGGGGTTCAACTTTGCCCAAATTTGGTGAATGGGATGAAAAAAATCCTGCTGCAGCTCAAGGGTTCACAGTGATTTTCGACCGGGCTCGAGATAA
TAAGAAGAATGCAGGAACTTCGAATAATATCGAACCAGAGGAAAACCAAAACAAATACCAAAACAAAAAACATAAACCTGCTAACAAGAATCACAAGCACAAGCACCCAA
GAAAGCAGAAAGTATGGTATTCCAGCTTGTGCTTCTGCTAG
mRNA sequenceShow/hide mRNA sequence
CATCGTTATTAGCAGTCGCAATGAGCCGCCTATTTTGAGCTCTTCAAATTCTTCTTCTTTAATAAAGTGGATTTCATTCATAAGAAGAAACCCCAATTCCTCTTCTTCTT
CTTCTTCTTCTTCAGGTGGAATATTCTTTCATTTTCCATATCTTCAAAGCTGCAATCTTCAGATATGGCATCAGGTTATAGGGGTTCAACTTTGCCCAAATTTGGTGAAT
GGGATGAAAAAAATCCTGCTGCAGCTCAAGGGTTCACAGTGATTTTCGACCGGGCTCGAGATAATAAGAAGAATGCAGGAACTTCGAATAATATCGAACCAGAGGAAAAC
CAAAACAAATACCAAAACAAAAAACATAAACCTGCTAACAAGAATCACAAGCACAAGCACCCAAGAAAGCAGAAAGTATGGTATTCCAGCTTGTGCTTCTGCTAGGCCTT
TTGTTGATCTGAAAGAGCAAATTATGCAGTTTGTGGTGGCTTTTTGAGTGCAGAGATTGATGTATGTGTAGATTTCAACTGGTTATGTATATGGTTTGTCATTTGGTGTC
TTGTTTTTGGAATTTTATTTATGGGGTTTTCATTCTGTTCATTGCATTAGGCCTCTTTGGGTTACTTCCTTCTGTTCTTGATACATGTTTATACAAAGAAAAAGTTAGAG
TTATTATTCTTC
Protein sequenceShow/hide protein sequence
MASGYRGSTLPKFGEWDEKNPAAAQGFTVIFDRARDNKKNAGTSNNIEPEENQNKYQNKKHKPANKNHKHKHPRKQKVWYSSLCFC