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Sed0020989 (gene) of Chayote v1 genome

Gene IDSed0020989
OrganismSechium edule (Chayote v1)
Descriptionarabinogalactan peptide 20-like
Genome locationLG02:52105741..52106067
RNA-Seq ExpressionSed0020989
SyntenySed0020989
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597108.1 Arabinogalactan protein 20, partial [Cucurbita argyrosperma subsp. sororia]1.2e-2282.28Show/hide
Query:  MASSSSDSCSRAFSGFFTFFALISFILSPIVDAQSSAPAPAPASDGTSIDQGIAYVLMLVALALTYLIHPLDAFSYNLF
        MASSSSDS   AFSGFFT FALI FILSP+V A SSA APAPASDGTSIDQGIAYVLML+AL LTYLIHPLDA SY  F
Subjt:  MASSSSDSCSRAFSGFFTFFALISFILSPIVDAQSSAPAPAPASDGTSIDQGIAYVLMLVALALTYLIHPLDAFSYNLF

XP_022924337.1 arabinogalactan peptide 16-like [Cucurbita moschata]2.6e-2280Show/hide
Query:  SSSDSCSRAFSGFFTFFALISFILSPIVDAQSS----APAPAPASDGTSIDQGIAYVLMLVALALTYLIHPLDAFSYNLF
        +SS+S SRAFSG FTFF LI FILSP+VDA SS    APAPAPASDGTSIDQG+AYVLMLVAL LTYLIHPLDA SYN F
Subjt:  SSSDSCSRAFSGFFTFFALISFILSPIVDAQSS----APAPAPASDGTSIDQGIAYVLMLVALALTYLIHPLDAFSYNLF

XP_022934029.1 arabinogalactan peptide 20-like [Cucurbita moschata]4.5e-2281.48Show/hide
Query:  MASSSSDSCSRAFSGFFTFFALISFILSPIVDAQS--SAPAPAPASDGTSIDQGIAYVLMLVALALTYLIHPLDAFSYNLF
        MASSSSDS   AFSGFFT FALI FILSP+V A S  SAPAPAPASDGTSIDQGIAYVLML+AL LTYLIHPLDA SY  F
Subjt:  MASSSSDSCSRAFSGFFTFFALISFILSPIVDAQS--SAPAPAPASDGTSIDQGIAYVLMLVALALTYLIHPLDAFSYNLF

XP_023528757.1 arabinogalactan peptide 16-like [Cucurbita pepo subsp. pepo]1.6e-2282.05Show/hide
Query:  SSSDSCSRAFSGFFTFFALISFILSPIVDAQSS--APAPAPASDGTSIDQGIAYVLMLVALALTYLIHPLDAFSYNLF
        +SS+S SRAFSG FTFF LI FILSP+VDA SS  APAPAPASDGTSIDQG+AYVLMLVAL LTYLIHPLDA SYN F
Subjt:  SSSDSCSRAFSGFFTFFALISFILSPIVDAQSS--APAPAPASDGTSIDQGIAYVLMLVALALTYLIHPLDAFSYNLF

XP_038905636.1 arabinogalactan protein 41-like [Benincasa hispida]1.3e-2184Show/hide
Query:  SSDSCSRAFSGFFTFFALISFILSPIVDAQSSAPAPAPASDGTSIDQGIAYVLMLVALALTYLIHPLDAFSYNLF
        SS+S SRAFSG FTFFALI FILSP+VDA + APAPAPASDGTSIDQGIAYVLMLVAL LTYLIHPLDA SY+ F
Subjt:  SSDSCSRAFSGFFTFFALISFILSPIVDAQSSAPAPAPASDGTSIDQGIAYVLMLVALALTYLIHPLDAFSYNLF

TrEMBL top hitse value%identityAlignment
A0A6J1D1D7 arabinogalactan peptide 20-like1.2e-2079.49Show/hide
Query:  SSSDSCSRAFSGFFTFFALISFILSPIVDAQSS--APAPAPASDGTSIDQGIAYVLMLVALALTYLIHPLDAFSYNLF
        +SS S SRAFS  FT FALI FI+SP+VDA SS  APAPAPASDGTSIDQGIAYVLML+AL LTYLIHPLDA SYN F
Subjt:  SSSDSCSRAFSGFFTFFALISFILSPIVDAQSS--APAPAPASDGTSIDQGIAYVLMLVALALTYLIHPLDAFSYNLF

A0A6J1E8M6 arabinogalactan peptide 16-like1.3e-2280Show/hide
Query:  SSSDSCSRAFSGFFTFFALISFILSPIVDAQSS----APAPAPASDGTSIDQGIAYVLMLVALALTYLIHPLDAFSYNLF
        +SS+S SRAFSG FTFF LI FILSP+VDA SS    APAPAPASDGTSIDQG+AYVLMLVAL LTYLIHPLDA SYN F
Subjt:  SSSDSCSRAFSGFFTFFALISFILSPIVDAQSS----APAPAPASDGTSIDQGIAYVLMLVALALTYLIHPLDAFSYNLF

A0A6J1F1F2 arabinogalactan peptide 20-like2.2e-2281.48Show/hide
Query:  MASSSSDSCSRAFSGFFTFFALISFILSPIVDAQS--SAPAPAPASDGTSIDQGIAYVLMLVALALTYLIHPLDAFSYNLF
        MASSSSDS   AFSGFFT FALI FILSP+V A S  SAPAPAPASDGTSIDQGIAYVLML+AL LTYLIHPLDA SY  F
Subjt:  MASSSSDSCSRAFSGFFTFFALISFILSPIVDAQS--SAPAPAPASDGTSIDQGIAYVLMLVALALTYLIHPLDAFSYNLF

A0A6J1IAU1 arabinogalactan peptide 16-like2.7e-2078.48Show/hide
Query:  SSSSDSCSRAFSGFFTFFALISFILSPIVDAQS--SAPAPAPASDGTSIDQGIAYVLMLVALALTYLIHPLDAFSYNLF
        +SSSDS   AFSGFFT FALI FIL P+V A S  SAPAPAPASDGTSIDQGIAYVLML+AL LTYLIHPLDA SY  F
Subjt:  SSSSDSCSRAFSGFFTFFALISFILSPIVDAQS--SAPAPAPASDGTSIDQGIAYVLMLVALALTYLIHPLDAFSYNLF

A0A6J1IQM6 arabinogalactan peptide 20-like9.2e-2176.25Show/hide
Query:  SSSDSCSRAFSGFFTFFALISFILSPIVDAQSS----APAPAPASDGTSIDQGIAYVLMLVALALTYLIHPLDAFSYNLF
        +SS+S  RAFSG FTFF LI FILSP++DA SS    APAPAPASDGTSIDQG+AYVLMLVAL LTYLIHPLDA S N F
Subjt:  SSSDSCSRAFSGFFTFFALISFILSPIVDAQSS----APAPAPASDGTSIDQGIAYVLMLVALALTYLIHPLDAFSYNLF

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 163.6e-1469.7Show/hide
Query:  TFFALISFILSPIVD---AQSSAPAPAPASDGTSIDQGIAYVLMLVALALTYLIHPLDA-FSYNLF
        T FAL SF+ + I+    AQS APAPAP SDGTSIDQGIAY+LM+VAL LTYLIHPLDA  SY+ F
Subjt:  TFFALISFILSPIVD---AQSSAPAPAPASDGTSIDQGIAYVLMLVALALTYLIHPLDA-FSYNLF

Q8L9T8 Arabinogalactan protein 411.4e-1369.35Show/hide
Query:  SCSRAFSGFFTFFALISFILSPIVDAQSSAPAPAPASDGTSIDQGIAYVLMLVALALTYLIH
        S SR F G  T  ++I  IL P+  AQS+APAPAP SDGT+IDQGIAYVLMLVAL LTYLIH
Subjt:  SCSRAFSGFFTFFALISFILSPIVDAQSSAPAPAPASDGTSIDQGIAYVLMLVALALTYLIH

Q9FK16 Arabinogalactan protein 226.8e-1376Show/hide
Query:  FALISFILSPIVDAQSSAPAPAPASDGTSIDQGIAYVLMLVALALTYLIH
        F +IS IL PI  + SS+PAPAP SDGTSIDQGIAYVLM+VALALTY IH
Subjt:  FALISFILSPIVDAQSSAPAPAPASDGTSIDQGIAYVLMLVALALTYLIH

Q9M373 Arabinogalactan protein 202.8e-1463.64Show/hide
Query:  SRAFSGFFTFFALISFILSPIVDAQSSAPAPAPASDGTSIDQGIAYVLMLVALALTYLIHPLDAFS
        SR        FA +  ++SP   AQS APAP+P SDGTSIDQGIAY+LM+VAL LTYLIHPLDA S
Subjt:  SRAFSGFFTFFALISFILSPIVDAQSSAPAPAPASDGTSIDQGIAYVLMLVALALTYLIHPLDAFS

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 162.6e-1569.7Show/hide
Query:  TFFALISFILSPIVD---AQSSAPAPAPASDGTSIDQGIAYVLMLVALALTYLIHPLDA-FSYNLF
        T FAL SF+ + I+    AQS APAPAP SDGTSIDQGIAY+LM+VAL LTYLIHPLDA  SY+ F
Subjt:  TFFALISFILSPIVD---AQSSAPAPAPASDGTSIDQGIAYVLMLVALALTYLIHPLDA-FSYNLF

AT3G61640.1 arabinogalactan protein 202.0e-1563.64Show/hide
Query:  SRAFSGFFTFFALISFILSPIVDAQSSAPAPAPASDGTSIDQGIAYVLMLVALALTYLIHPLDAFS
        SR        FA +  ++SP   AQS APAP+P SDGTSIDQGIAY+LM+VAL LTYLIHPLDA S
Subjt:  SRAFSGFFTFFALISFILSPIVDAQSSAPAPAPASDGTSIDQGIAYVLMLVALALTYLIHPLDAFS

AT5G24105.1 arabinogalactan protein 419.7e-1569.35Show/hide
Query:  SCSRAFSGFFTFFALISFILSPIVDAQSSAPAPAPASDGTSIDQGIAYVLMLVALALTYLIH
        S SR F G  T  ++I  IL P+  AQS+APAPAP SDGT+IDQGIAYVLMLVAL LTYLIH
Subjt:  SCSRAFSGFFTFFALISFILSPIVDAQSSAPAPAPASDGTSIDQGIAYVLMLVALALTYLIH

AT5G53250.1 arabinogalactan protein 224.8e-1476Show/hide
Query:  FALISFILSPIVDAQSSAPAPAPASDGTSIDQGIAYVLMLVALALTYLIH
        F +IS IL PI  + SS+PAPAP SDGTSIDQGIAYVLM+VALALTY IH
Subjt:  FALISFILSPIVDAQSSAPAPAPASDGTSIDQGIAYVLMLVALALTYLIH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCGTCGTCCTCCGATTCATGTTCTAGGGCTTTCTCCGGATTCTTCACATTCTTCGCTCTCATCTCCTTCATTCTATCGCCGATTGTTGACGCGCAATCTTCTGC
TCCGGCTCCGGCTCCTGCAAGCGACGGGACCTCCATAGATCAGGGAATTGCGTACGTGTTGATGCTGGTGGCGTTGGCTCTTACATATCTCATCCATCCTCTTGATGCAT
TTTCCTACAATTTATTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCGTCGTCCTCCGATTCATGTTCTAGGGCTTTCTCCGGATTCTTCACATTCTTCGCTCTCATCTCCTTCATTCTATCGCCGATTGTTGACGCGCAATCTTCTGC
TCCGGCTCCGGCTCCTGCAAGCGACGGGACCTCCATAGATCAGGGAATTGCGTACGTGTTGATGCTGGTGGCGTTGGCTCTTACATATCTCATCCATCCTCTTGATGCAT
TTTCCTACAATTTATTTTGA
Protein sequenceShow/hide protein sequence
MASSSSDSCSRAFSGFFTFFALISFILSPIVDAQSSAPAPAPASDGTSIDQGIAYVLMLVALALTYLIHPLDAFSYNLF