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Sed0020997 (gene) of Chayote v1 genome

Gene IDSed0020997
OrganismSechium edule (Chayote v1)
DescriptionAvrRpt-cleavage domain-containing protein
Genome locationLG05:1231187..1232892
RNA-Seq ExpressionSed0020997
SyntenySed0020997
Gene Ontology termsNA
InterPro domainsIPR008700 - RIN4, pathogenic type III effector avirulence factor Avr cleavage site
IPR040387 - RPM1-interacting protein 4/NOI4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606311.1 RPM1-interacting protein 4, partial [Cucurbita argyrosperma subsp. sororia]8.1e-1672.13Show/hide
Query:  DNEAAVPKFGEWNDRDATPPNNYTAIFTRVREQRQEQGARAPTPQRNGNSPSNQNHEHQKK
        D E AVPKFGEWNDRDATPP+NYTAIFT+VRE+RQ+QGAR PT  +N N P NQN E  +K
Subjt:  DNEAAVPKFGEWNDRDATPPNNYTAIFTRVREQRQEQGARAPTPQRNGNSPSNQNHEHQKK
KAG7036250.1 hypothetical protein SDJN02_03052 [Cucurbita argyrosperma subsp. argyrosperma]2.1e-1667.16Show/hide
Query:  DNEAAVPKFGEWNDRDATPPNNYTAIFTRVREQRQEQGARAPTPQRNGNSPSNQNHEHQKKVIEEIS
        D E AVPKFGEWNDRDATPP+NYTAIFT+VRE+RQ+QGAR PT  +N N P NQN E  +KV   ++
Subjt:  DNEAAVPKFGEWNDRDATPPNNYTAIFTRVREQRQEQGARAPTPQRNGNSPSNQNHEHQKKVIEEIS
XP_023528496.1 uncharacterized protein LOC111791404 [Cucurbita pepo subsp. pepo]9.3e-0442.62Show/hide
Query:  DNEAAVPKFGEWNDRDATPPNNYTAIFTRVREQRQEQGARAPTPQRNGNSPSNQNHEHQKK
        D  A VPKFG+W++ D T   NY+ IFTRVRE+RQ +    P      N+ S    E+ K+
Subjt:  DNEAAVPKFGEWNDRDATPPNNYTAIFTRVREQRQEQGARAPTPQRNGNSPSNQNHEHQKK
XP_038888923.1 RPM1-interacting protein 4-like [Benincasa hispida]6.4e-1369.35Show/hide
Query:  DNEAAVPKFGEWNDRDATPPNNYTAIFTRVREQRQEQGARAPTPQRN-GNSPSNQNHEHQKK
        DNEA VPKFGEW+DRDA  P NYTAIF +VRE RQE G RA TP R+  NS +NQNHEH +K
Subjt:  DNEAAVPKFGEWNDRDATPPNNYTAIFTRVREQRQEQGARAPTPQRN-GNSPSNQNHEHQKK
TrEMBL top hitse value%identityAlignment
A0A0A0L950 AvrRpt-cleavage domain-containing protein5.5e-1057.58Show/hide
Query:  DNEAAVPKFGEWNDRDATPPNNYTAIFTRVREQRQEQGARAPTPQRNGNSPSNQNHEHQKKVIEEI
        DNE AVPKFGEW+D DA  P NYTAIF +VRE+RQ+Q  R  TP R  +S ++QNHE  +K+ ++I
Subjt:  DNEAAVPKFGEWNDRDATPPNNYTAIFTRVREQRQEQGARAPTPQRNGNSPSNQNHEHQKKVIEEI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAGAACTGATAATGAAGCTGCAGTTCCGAAATTCGGCGAATGGAACGACAGGGATGCCACGCCCCCCAACAACTACACGGCTATTTTCACGAGGGTGCGAGAACA
GAGACAGGAGCAAGGAGCAAGAGCCCCGACGCCGCAACGCAACGGTAACAGTCCAAGTAACCAAAACCATGAACACCAAAAAAAGGTAATTGAAGAAATCAGCTCAATTT
CTCAGTCAAGCATATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGAGAACTGATAATGAAGCTGCAGTTCCGAAATTCGGCGAATGGAACGACAGGGATGCCACGCCCCCCAACAACTACACGGCTATTTTCACGAGGGTGCGAGAACA
GAGACAGGAGCAAGGAGCAAGAGCCCCGACGCCGCAACGCAACGGTAACAGTCCAAGTAACCAAAACCATGAACACCAAAAAAAGGTAATTGAAGAAATCAGCTCAATTT
CTCAGTCAAGCATATGA
Protein sequenceShow/hide protein sequence
MSRTDNEAAVPKFGEWNDRDATPPNNYTAIFTRVREQRQEQGARAPTPQRNGNSPSNQNHEHQKKVIEEISSISQSSI