; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0021000 (gene) of Chayote v1 genome

Gene IDSed0021000
OrganismSechium edule (Chayote v1)
DescriptionDNA-directed RNA polymerase III subunit rpc6
Genome locationLG05:42052752..42055423
RNA-Seq ExpressionSed0021000
SyntenySed0021000
Gene Ontology termsGO:0006383 - transcription by RNA polymerase III (biological process)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsIPR007832 - RNA polymerase Rpc34
IPR016049 - RNA polymerase Rpc34-like
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6604735.1 DNA-directed RNA polymerase III subunit rpc6, partial [Cucurbita argyrosperma subsp. sororia]2.3e-11788.38Show/hide
Query:  MSKSQGPSSSQKRKRPDSAHGSGGTLIAHEKVLYDLITSKQSMGIWIGDMKRETKYPDNVVTKSLKALQAKGLIKLVEHYRNKGKKFYMSTDFEPSKELT
        MS+SQGP SS KRKRP+ AHG GG LI HEKVLYDLI SKQSMGIWIGDMKRETKYPDNVVTKSLKALQ +GLIKLVEHY+NKGKKFY+S DFEPSKELT
Subjt:  MSKSQGPSSSQKRKRPDSAHGSGGTLIAHEKVLYDLITSKQSMGIWIGDMKRETKYPDNVVTKSLKALQAKGLIKLVEHYRNKGKKFYMSTDFEPSKELT

Query:  GGNWYSEGKLDREYINTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVKEVKSTGSGEFDLIPVGKICYKCYAKGGAKV
        GGNWYS+GKLDREYI+TLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEV EVKSTG+GEFD IPVGKICYK YAK G K 
Subjt:  GGNWYSEGKLDREYINTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVKEVKSTGSGEFDLIPVGKICYKCYAKGGAKV

Query:  EPKVGALASTPCGVCPRISHCTPNGVISPRTCVYYTKWLDF
        EPK GA+ASTPCGVCPRI+HCTPNG+ISPRTCVYYTKWL+F
Subjt:  EPKVGALASTPCGVCPRISHCTPNGVISPRTCVYYTKWLDF

XP_022149571.1 DNA-directed RNA polymerase III subunit rpc6 isoform X1 [Momordica charantia]7.8e-11888.8Show/hide
Query:  MSKSQGPSSSQKRKRPDSAHGSGGTLIAHEKVLYDLITSKQSMGIWIGDMKRETKYPDNVVTKSLKALQAKGLIKLVEHYRNKGKKFYMSTDFEPSKELT
        MS+SQGP SS KRKRPDS+  SGG LI HEKVLYDLI SKQSMGIWIGD+KRETKY D++VTKSLKALQAKG+IKLVEHY+NKGKKFY+S DFEPSKELT
Subjt:  MSKSQGPSSSQKRKRPDSAHGSGGTLIAHEKVLYDLITSKQSMGIWIGDMKRETKYPDNVVTKSLKALQAKGLIKLVEHYRNKGKKFYMSTDFEPSKELT

Query:  GGNWYSEGKLDREYINTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVKEVKSTGSGEFDLIPVGKICYKCYAKGGAKV
        GGNWYSEGKLDREYINTLKGFC RMIQKMKVATIEGIVDSFKKSGASKVDLSREQI+EIVNALVLDNEV EVKSTGSGEFD IP+GKICYKCYAKGG K 
Subjt:  GGNWYSEGKLDREYINTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVKEVKSTGSGEFDLIPVGKICYKCYAKGGAKV

Query:  EPKVGALASTPCGVCPRISHCTPNGVISPRTCVYYTKWLDF
        EPK GA+AS PCGVCPRISHCTPNGVISPRTCVYYTKWLDF
Subjt:  EPKVGALASTPCGVCPRISHCTPNGVISPRTCVYYTKWLDF

XP_022149573.1 DNA-directed RNA polymerase III subunit rpc6 isoform X2 [Momordica charantia]2.1e-10290.95Show/hide
Query:  MGIWIGDMKRETKYPDNVVTKSLKALQAKGLIKLVEHYRNKGKKFYMSTDFEPSKELTGGNWYSEGKLDREYINTLKGFCARMIQKMKVATIEGIVDSFK
        MGIWIGD+KRETKY D++VTKSLKALQAKG+IKLVEHY+NKGKKFY+S DFEPSKELTGGNWYSEGKLDREYINTLKGFC RMIQKMKVATIEGIVDSFK
Subjt:  MGIWIGDMKRETKYPDNVVTKSLKALQAKGLIKLVEHYRNKGKKFYMSTDFEPSKELTGGNWYSEGKLDREYINTLKGFCARMIQKMKVATIEGIVDSFK

Query:  KSGASKVDLSREQIEEIVNALVLDNEVKEVKSTGSGEFDLIPVGKICYKCYAKGGAKVEPKVGALASTPCGVCPRISHCTPNGVISPRTCVYYTKWLDF
        KSGASKVDLSREQI+EIVNALVLDNEV EVKSTGSGEFD IP+GKICYKCYAKGG K EPK GA+AS PCGVCPRISHCTPNGVISPRTCVYYTKWLDF
Subjt:  KSGASKVDLSREQIEEIVNALVLDNEVKEVKSTGSGEFDLIPVGKICYKCYAKGGAKVEPKVGALASTPCGVCPRISHCTPNGVISPRTCVYYTKWLDF

XP_022946967.1 DNA-directed RNA polymerase III subunit rpc6 [Cucurbita moschata]2.3e-11788.38Show/hide
Query:  MSKSQGPSSSQKRKRPDSAHGSGGTLIAHEKVLYDLITSKQSMGIWIGDMKRETKYPDNVVTKSLKALQAKGLIKLVEHYRNKGKKFYMSTDFEPSKELT
        MS+SQGP SS KRKRP+ AHG GG LI HEKVLYDLI SKQSMGIWIGDMKRETKYPDNVVTKSLKALQ +GLIKLVEHY+NKGKKFY+S DFEPSKELT
Subjt:  MSKSQGPSSSQKRKRPDSAHGSGGTLIAHEKVLYDLITSKQSMGIWIGDMKRETKYPDNVVTKSLKALQAKGLIKLVEHYRNKGKKFYMSTDFEPSKELT

Query:  GGNWYSEGKLDREYINTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVKEVKSTGSGEFDLIPVGKICYKCYAKGGAKV
        GGNWYS+GKLDREYI+TLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEV EVKSTG+GEFD IPVGKICYK YAK G K 
Subjt:  GGNWYSEGKLDREYINTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVKEVKSTGSGEFDLIPVGKICYKCYAKGGAKV

Query:  EPKVGALASTPCGVCPRISHCTPNGVISPRTCVYYTKWLDF
        EPK GA+ASTPCGVCPRI+HCTPNG+ISPRTCVYYTKWL+F
Subjt:  EPKVGALASTPCGVCPRISHCTPNGVISPRTCVYYTKWLDF

XP_022970903.1 DNA-directed RNA polymerase III subunit rpc6 [Cucurbita maxima]1.7e-11788.38Show/hide
Query:  MSKSQGPSSSQKRKRPDSAHGSGGTLIAHEKVLYDLITSKQSMGIWIGDMKRETKYPDNVVTKSLKALQAKGLIKLVEHYRNKGKKFYMSTDFEPSKELT
        MS+SQGP SS KRKRP+ AHG GG LI HEKVLYDLI SKQSMGIWIGDMKRETKYPDNVVTKSLKALQA+GLIKLVEHY+NKGKKFY+S DFEPSKELT
Subjt:  MSKSQGPSSSQKRKRPDSAHGSGGTLIAHEKVLYDLITSKQSMGIWIGDMKRETKYPDNVVTKSLKALQAKGLIKLVEHYRNKGKKFYMSTDFEPSKELT

Query:  GGNWYSEGKLDREYINTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVKEVKSTGSGEFDLIPVGKICYKCYAKGGAKV
        GGNWYS+GKLDREYI+TLKGFCARMIQKMKVATIEGIVD+FKKSGASKVDLSREQIEEIVNALVLDNEV EVKSTG+GEFD IPVGKICYK YAK G K 
Subjt:  GGNWYSEGKLDREYINTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVKEVKSTGSGEFDLIPVGKICYKCYAKGGAKV

Query:  EPKVGALASTPCGVCPRISHCTPNGVISPRTCVYYTKWLDF
        EPK GA+ASTPCGVCPRI+HCTPNG+ISPRTCVYYTKWL+F
Subjt:  EPKVGALASTPCGVCPRISHCTPNGVISPRTCVYYTKWLDF

TrEMBL top hitse value%identityAlignment
A0A1S3BL06 DNA-directed RNA polymerase III subunit rpc6-like7.5e-9874.59Show/hide
Query:  MSKSQGPSSSQKRKRPD--SAHGSGGTLIAHEKVLYDLITSKQSMGIWIGDMKRETKYPDNVVTKSLKALQAKGLIKLVEHYRNKGKKFYMSTDFEPSKE
        MSKSQGP SS KRKRPD  + + SGG LI  EKVLYDLI SKQSMGI   DMKRETK+ ++VVTKSLK+LQ KGLIK+V+HY+NKGKKFY+S DFEP+KE
Subjt:  MSKSQGPSSSQKRKRPD--SAHGSGGTLIAHEKVLYDLITSKQSMGIWIGDMKRETKYPDNVVTKSLKALQAKGLIKLVEHYRNKGKKFYMSTDFEPSKE

Query:  LTGGNWYSEGKLDREYINTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVKEVKSTGSGEFDLIPVGKICYK-CYAKGG
        LTGGNWY +G+LD++YINTLK  CARMIQ+ K+ TIEGIV+SFK+SGA KV+LSREQIEEIVNALVLDN+V EVKS+G GEF+ IP+GKICYK C   GG
Subjt:  LTGGNWYSEGKLDREYINTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVKEVKSTGSGEFDLIPVGKICYK-CYAKGG

Query:  AKVEPKVGALASTPCGVCPRISHCTPNGVISPRTCVYYTKWLDF
         K EPK+GA+AS PCGVCPRI++CTPNG+ISP TCVYYTKWLDF
Subjt:  AKVEPKVGALASTPCGVCPRISHCTPNGVISPRTCVYYTKWLDF

A0A6J1D758 DNA-directed RNA polymerase III subunit rpc6 isoform X21.0e-10290.95Show/hide
Query:  MGIWIGDMKRETKYPDNVVTKSLKALQAKGLIKLVEHYRNKGKKFYMSTDFEPSKELTGGNWYSEGKLDREYINTLKGFCARMIQKMKVATIEGIVDSFK
        MGIWIGD+KRETKY D++VTKSLKALQAKG+IKLVEHY+NKGKKFY+S DFEPSKELTGGNWYSEGKLDREYINTLKGFC RMIQKMKVATIEGIVDSFK
Subjt:  MGIWIGDMKRETKYPDNVVTKSLKALQAKGLIKLVEHYRNKGKKFYMSTDFEPSKELTGGNWYSEGKLDREYINTLKGFCARMIQKMKVATIEGIVDSFK

Query:  KSGASKVDLSREQIEEIVNALVLDNEVKEVKSTGSGEFDLIPVGKICYKCYAKGGAKVEPKVGALASTPCGVCPRISHCTPNGVISPRTCVYYTKWLDF
        KSGASKVDLSREQI+EIVNALVLDNEV EVKSTGSGEFD IP+GKICYKCYAKGG K EPK GA+AS PCGVCPRISHCTPNGVISPRTCVYYTKWLDF
Subjt:  KSGASKVDLSREQIEEIVNALVLDNEVKEVKSTGSGEFDLIPVGKICYKCYAKGGAKVEPKVGALASTPCGVCPRISHCTPNGVISPRTCVYYTKWLDF

A0A6J1D8D1 DNA-directed RNA polymerase III subunit rpc6 isoform X13.8e-11888.8Show/hide
Query:  MSKSQGPSSSQKRKRPDSAHGSGGTLIAHEKVLYDLITSKQSMGIWIGDMKRETKYPDNVVTKSLKALQAKGLIKLVEHYRNKGKKFYMSTDFEPSKELT
        MS+SQGP SS KRKRPDS+  SGG LI HEKVLYDLI SKQSMGIWIGD+KRETKY D++VTKSLKALQAKG+IKLVEHY+NKGKKFY+S DFEPSKELT
Subjt:  MSKSQGPSSSQKRKRPDSAHGSGGTLIAHEKVLYDLITSKQSMGIWIGDMKRETKYPDNVVTKSLKALQAKGLIKLVEHYRNKGKKFYMSTDFEPSKELT

Query:  GGNWYSEGKLDREYINTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVKEVKSTGSGEFDLIPVGKICYKCYAKGGAKV
        GGNWYSEGKLDREYINTLKGFC RMIQKMKVATIEGIVDSFKKSGASKVDLSREQI+EIVNALVLDNEV EVKSTGSGEFD IP+GKICYKCYAKGG K 
Subjt:  GGNWYSEGKLDREYINTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVKEVKSTGSGEFDLIPVGKICYKCYAKGGAKV

Query:  EPKVGALASTPCGVCPRISHCTPNGVISPRTCVYYTKWLDF
        EPK GA+AS PCGVCPRISHCTPNGVISPRTCVYYTKWLDF
Subjt:  EPKVGALASTPCGVCPRISHCTPNGVISPRTCVYYTKWLDF

A0A6J1G553 DNA-directed RNA polymerase III subunit rpc61.1e-11788.38Show/hide
Query:  MSKSQGPSSSQKRKRPDSAHGSGGTLIAHEKVLYDLITSKQSMGIWIGDMKRETKYPDNVVTKSLKALQAKGLIKLVEHYRNKGKKFYMSTDFEPSKELT
        MS+SQGP SS KRKRP+ AHG GG LI HEKVLYDLI SKQSMGIWIGDMKRETKYPDNVVTKSLKALQ +GLIKLVEHY+NKGKKFY+S DFEPSKELT
Subjt:  MSKSQGPSSSQKRKRPDSAHGSGGTLIAHEKVLYDLITSKQSMGIWIGDMKRETKYPDNVVTKSLKALQAKGLIKLVEHYRNKGKKFYMSTDFEPSKELT

Query:  GGNWYSEGKLDREYINTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVKEVKSTGSGEFDLIPVGKICYKCYAKGGAKV
        GGNWYS+GKLDREYI+TLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEV EVKSTG+GEFD IPVGKICYK YAK G K 
Subjt:  GGNWYSEGKLDREYINTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVKEVKSTGSGEFDLIPVGKICYKCYAKGGAKV

Query:  EPKVGALASTPCGVCPRISHCTPNGVISPRTCVYYTKWLDF
        EPK GA+ASTPCGVCPRI+HCTPNG+ISPRTCVYYTKWL+F
Subjt:  EPKVGALASTPCGVCPRISHCTPNGVISPRTCVYYTKWLDF

A0A6J1I599 DNA-directed RNA polymerase III subunit rpc68.5e-11888.38Show/hide
Query:  MSKSQGPSSSQKRKRPDSAHGSGGTLIAHEKVLYDLITSKQSMGIWIGDMKRETKYPDNVVTKSLKALQAKGLIKLVEHYRNKGKKFYMSTDFEPSKELT
        MS+SQGP SS KRKRP+ AHG GG LI HEKVLYDLI SKQSMGIWIGDMKRETKYPDNVVTKSLKALQA+GLIKLVEHY+NKGKKFY+S DFEPSKELT
Subjt:  MSKSQGPSSSQKRKRPDSAHGSGGTLIAHEKVLYDLITSKQSMGIWIGDMKRETKYPDNVVTKSLKALQAKGLIKLVEHYRNKGKKFYMSTDFEPSKELT

Query:  GGNWYSEGKLDREYINTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVKEVKSTGSGEFDLIPVGKICYKCYAKGGAKV
        GGNWYS+GKLDREYI+TLKGFCARMIQKMKVATIEGIVD+FKKSGASKVDLSREQIEEIVNALVLDNEV EVKSTG+GEFD IPVGKICYK YAK G K 
Subjt:  GGNWYSEGKLDREYINTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVKEVKSTGSGEFDLIPVGKICYKCYAKGGAKV

Query:  EPKVGALASTPCGVCPRISHCTPNGVISPRTCVYYTKWLDF
        EPK GA+ASTPCGVCPRI+HCTPNG+ISPRTCVYYTKWL+F
Subjt:  EPKVGALASTPCGVCPRISHCTPNGVISPRTCVYYTKWLDF

SwissProt top hitse value%identityAlignment
Q2T9S3 DNA-directed RNA polymerase III subunit RPC61.6e-2531.3Show/hide
Query:  EKVLYDLITSKQSMGIWIGDMKRETKYPDNVVTKSLKALQAKGLIKLVEHYRNKGKKFYMSTDFEPSKELTGGNWYSEGKLDREYINTLKGFCARMIQKM
        EK++Y +I    + GIW  D++ ++  P   + K LK L++K LIK V+      KK YM  + +P + +TGG WYS+   + E++  L   C + +Q  
Subjt:  EKVLYDLITSKQSMGIWIGDMKRETKYPDNVVTKSLKALQAKGLIKLVEHYRNKGKKFYMSTDFEPSKELTGGNWYSEGKLDREYINTLKGFCARMIQKM

Query:  KVATIEGIVD-------SFKKS----------GASKVDLSREQIEEIVNALVLDNEVK-EVKSTGSGEFDLIPVGKICYKCYAKGGAKVEPKVGALASTP
             E   +       SF  S          G SKV+LS E IE I+N L+ D +V+  + +   G    +      Y+      + + P  G L   P
Subjt:  KVATIEGIVD-------SFKKS----------GASKVDLSREQIEEIVNALVLDNEVK-EVKSTGSGEFDLIPVGKICYKCYAKGGAKVEPKVGALASTP

Query:  CGVCPRISHCTPNGVISPRTCVYYTKWLDF
        CG+CP    C   G ISP  C+Y T+WL+F
Subjt:  CGVCPRISHCTPNGVISPRTCVYYTKWLDF

Q86JM3 DNA-directed RNA polymerase III subunit rpc62.8e-2529.79Show/hide
Query:  SSSQKRKRPDSAHGSGGTLIAHEKVLYDLITSKQSMGIWIGDMKRETKYPDNVVTKSLKALQAKGLIKLVEHYRNKGKKFYMSTDFEPSKELTGGNWYSE
        ++S K   P+      G L   + ++Y LI +  + G W  ++K  + Y    +TK LK L+++ LIK V+  ++  KK YM  + EPS+E+TGG  YS+
Subjt:  SSSQKRKRPDSAHGSGGTLIAHEKVLYDLITSKQSMGIWIGDMKRETKYPDNVVTKSLKALQAKGLIKLVEHYRNKGKKFYMSTDFEPSKELTGGNWYSE

Query:  GKLDREYINTLKGFCARMIQKMKVATIEGIVDSFKK--SGASKVDLSREQIEEIVNALVLDNEVKEVKSTGSGEFDLIPVGKICYKCYAKGGAKVEPKVG
           D +YI  +K      +       +  I+   +K    A+   L  E I+ +VN ++ D +++E++ T  G   L     I YK       K    V 
Subjt:  GKLDREYINTLKGFCARMIQKMKVATIEGIVDSFKK--SGASKVDLSREQIEEIVNALVLDNEVKEVKSTGSGEFDLIPVGKICYKCYAKGGAKVEPKVG

Query:  ALASTPCGVCPRISHCTPNGVISPRTCVYYTKWLD
           + PCG CP    C+ NG++SP+ CVY+ ++L+
Subjt:  ALASTPCGVCPRISHCTPNGVISPRTCVYYTKWLD

Q921X6 DNA-directed RNA polymerase III subunit RPC66.2e-2530.87Show/hide
Query:  EKVLYDLITSKQSMGIWIGDMKRETKYPDNVVTKSLKALQAKGLIKLVEHYRNKGKKFYMSTDFEPSKELTGGNWYSEGKLDREYINTLKGFCARMIQKM
        EK++Y +I    + GIW  D++ ++  P   + K LK L++K LIK V+      KK YM  + +P + +TGG WYS+   + E++  L   C + +Q  
Subjt:  EKVLYDLITSKQSMGIWIGDMKRETKYPDNVVTKSLKALQAKGLIKLVEHYRNKGKKFYMSTDFEPSKELTGGNWYSEGKLDREYINTLKGFCARMIQKM

Query:  KVATIEGIVD-------SFKKS----------GASKVDLSREQIEEIVNALVLDNEVK-EVKSTGSGEFDLIPVGKICYKCYAKGGAKVEPKVGALASTP
             E   +       SF  S          G SKV+LS E IE I+N L+ D +V+  + +   G    +      Y+        + P  G + + P
Subjt:  KVATIEGIVD-------SFKKS----------GASKVDLSREQIEEIVNALVLDNEVK-EVKSTGSGEFDLIPVGKICYKCYAKGGAKVEPKVGALASTP

Query:  CGVCPRISHCTPNGVISPRTCVYYTKWLDF
        CG+CP    C   G ISP  C+Y T+WL+F
Subjt:  CGVCPRISHCTPNGVISPRTCVYYTKWLDF

Q9H1D9 DNA-directed RNA polymerase III subunit RPC64.7e-2532.19Show/hide
Query:  EKVLYDLITSKQSMGIWIGDMKRETKYPDNVVTKSLKALQAKGLIKLVEHYRNKGKKFYMSTDFEPSKELTGGNWYSEGKLDREYINTLKGFCARMIQKM
        EK++Y +I    + GIW  D++ ++  P   + K LK L++K LIK V+      KK YM  + +P + +TGG WYS+   + E++  L   C + +Q  
Subjt:  EKVLYDLITSKQSMGIWIGDMKRETKYPDNVVTKSLKALQAKGLIKLVEHYRNKGKKFYMSTDFEPSKELTGGNWYSEGKLDREYINTLKGFCARMIQKM

Query:  KVATIEGIVD-------SFKKS----------GASKVDLSREQIEEIVNALVLDNEVK----EVKSTGSGEFDLIPVGKICYKCYAKGGAKVEPKVGALA
             E   +       SF  S          G SKV+LS E IE I+N L+ D +V+      K    G  D    G +  K Y      + P    L 
Subjt:  KVATIEGIVD-------SFKKS----------GASKVDLSREQIEEIVNALVLDNEVK----EVKSTGSGEFDLIPVGKICYKCYAKGGAKVEPKVGALA

Query:  STPCGVCPRISHCTPNGVISPRTCVYYTKWLDF
          PCG+CP    C   G ISP  C+Y T+WL+F
Subjt:  STPCGVCPRISHCTPNGVISPRTCVYYTKWLDF

Q9VD25 Probable DNA-directed RNA polymerase III subunit RPC68.4e-2228.95Show/hide
Query:  EKVLYDLITSKQSMGIWIGDMKRETKYPDNVVTKSLKALQAKGLIKLVEHYRNKGKKFYMSTDFEPSKELTGGNWYSEGKLDREYINTLKGFCARMIQ--
        EKV+Y ++    + GIWI D++ ++      + K LK L+ K LIK V+      KK YM  + EP   +TGG WY +   + E+++ L   C R +Q  
Subjt:  EKVLYDLITSKQSMGIWIGDMKRETKYPDNVVTKSLKALQAKGLIKLVEHYRNKGKKFYMSTDFEPSKELTGGNWYSEGKLDREYINTLKGFCARMIQ--

Query:  ---------------KMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVKEVKSTGSGEFDLIPVGKICYKCYAKGGAKVEPKVGALASTPC
                       +M   T+  +       G SKV+L+   +E I+  +V D   + V+    G F            Y    A + P    L   PC
Subjt:  ---------------KMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVKEVKSTGSGEFDLIPVGKICYKCYAKGGAKVEPKVGALASTPC

Query:  GVCPRISHCTPNGVISPRTCVYYTKWLD
        G+CP I +C+  G ++  TC Y   WLD
Subjt:  GVCPRISHCTPNGVISPRTCVYYTKWLD

Arabidopsis top hitse value%identityAlignment
AT5G23710.1 DNA binding;DNA-directed RNA polymerases1.0e-5144.83Show/hide
Query:  KRKRPDSAHGSGGTLIAHEKVLYDLITSKQSMGIWIGDMKRETKYPDNVVTKSLKALQAKGLIKLVEHYRNKGKKFYMSTDFEPSKELTGGNWYSEGKLD
        KRKRPD     G     HEK L DLI   Q  G  + ++KRE   P  +VT+ + +L+ K LIK V +  NKG K Y++ +FEP  ELTGG WY++G LD
Subjt:  KRKRPDSAHGSGGTLIAHEKVLYDLITSKQSMGIWIGDMKRETKYPDNVVTKSLKALQAKGLIKLVEHYRNKGKKFYMSTDFEPSKELTGGNWYSEGKLD

Query:  REYINTLKGFCARMIQ--KMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVKEVKSTGSGEFDLIPVGKICYKCYAKGGAKVEPKVGALAS
           I  LK  C  +++  + +V T+E +   F K    +  LS +Q +EI+  L+LDN + EVKS G  EF    +G++CY+   K     EP+ GA AS
Subjt:  REYINTLKGFCARMIQ--KMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVKEVKSTGSGEFDLIPVGKICYKCYAKGGAKVEPKVGALAS

Query:  TPCGVCPRISHCTPNGVISPRTCVYYTKWLDF
         PCGVCP I+ C+P+GVISP TCVY+ KWLDF
Subjt:  TPCGVCPRISHCTPNGVISPRTCVYYTKWLDF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAAATCACAAGGGCCTTCATCATCACAAAAAAGAAAAAGGCCAGATTCAGCTCATGGCTCTGGAGGAACTCTCATTGCACATGAAAAAGTACTCTATGACCTGAT
AACCAGCAAGCAAAGCATGGGGATATGGATTGGAGACATGAAAAGAGAAACAAAGTATCCAGACAATGTGGTAACTAAATCTCTCAAGGCCCTCCAAGCCAAAGGCCTGA
TCAAACTGGTCGAACACTATCGAAACAAAGGGAAGAAATTCTACATGTCAACGGATTTCGAGCCGTCGAAAGAACTGACGGGCGGCAATTGGTACAGCGAGGGGAAACTC
GACAGAGAATACATCAACACCCTCAAAGGGTTCTGTGCAAGAATGATACAGAAGATGAAGGTGGCTACAATTGAAGGGATTGTGGACTCATTCAAAAAGAGTGGAGCTTC
AAAAGTGGACTTGTCTAGAGAGCAAATTGAAGAGATTGTGAATGCTTTGGTGTTGGACAATGAAGTCAAGGAGGTGAAGAGCACTGGGTCAGGGGAGTTTGATTTAATTC
CTGTTGGGAAGATTTGTTATAAGTGCTATGCAAAAGGAGGGGCCAAAGTGGAGCCTAAAGTTGGAGCTTTGGCTTCTACTCCTTGTGGAGTCTGTCCAAGGATTAGCCAT
TGTACACCAAATGGTGTCATTTCTCCTAGGACTTGTGTGTATTACACCAAGTGGTTAGATTTTTAA
mRNA sequenceShow/hide mRNA sequence
TTTACTTCAATTTTTTGTTCAGGGTTCAGCTATCATCAGGATCGGAGGTCATGTGTTCAAACTCTTGGAAAAGGGAAAGTAGAGAAAATAAAATGGAGAGGAGAGAAATG
ATCGTAAAAACTAAAATATTTTGAAGCTGTTGATGGAATGAGCAAATCACAAGGGCCTTCATCATCACAAAAAAGAAAAAGGCCAGATTCAGCTCATGGCTCTGGAGGAA
CTCTCATTGCACATGAAAAAGTACTCTATGACCTGATAACCAGCAAGCAAAGCATGGGGATATGGATTGGAGACATGAAAAGAGAAACAAAGTATCCAGACAATGTGGTA
ACTAAATCTCTCAAGGCCCTCCAAGCCAAAGGCCTGATCAAACTGGTCGAACACTATCGAAACAAAGGGAAGAAATTCTACATGTCAACGGATTTCGAGCCGTCGAAAGA
ACTGACGGGCGGCAATTGGTACAGCGAGGGGAAACTCGACAGAGAATACATCAACACCCTCAAAGGGTTCTGTGCAAGAATGATACAGAAGATGAAGGTGGCTACAATTG
AAGGGATTGTGGACTCATTCAAAAAGAGTGGAGCTTCAAAAGTGGACTTGTCTAGAGAGCAAATTGAAGAGATTGTGAATGCTTTGGTGTTGGACAATGAAGTCAAGGAG
GTGAAGAGCACTGGGTCAGGGGAGTTTGATTTAATTCCTGTTGGGAAGATTTGTTATAAGTGCTATGCAAAAGGAGGGGCCAAAGTGGAGCCTAAAGTTGGAGCTTTGGC
TTCTACTCCTTGTGGAGTCTGTCCAAGGATTAGCCATTGTACACCAAATGGTGTCATTTCTCCTAGGACTTGTGTGTATTACACCAAGTGGTTAGATTTTTAAATTTGAA
GTTTTTTTTTTAGATTGTTTTGAAGAATCAATGAGGTGATAATTTCACCCTCTAATGTGTGAGCCAAGAGCCAAATGTTTATAACCATACACTGTTCGAGTTGACATTTT
TAGATGATTTTTCGAACAATGTTATCGTTTTCATCTCATTTATGATGTATAGGTAAGTATGCTGG
Protein sequenceShow/hide protein sequence
MSKSQGPSSSQKRKRPDSAHGSGGTLIAHEKVLYDLITSKQSMGIWIGDMKRETKYPDNVVTKSLKALQAKGLIKLVEHYRNKGKKFYMSTDFEPSKELTGGNWYSEGKL
DREYINTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVKEVKSTGSGEFDLIPVGKICYKCYAKGGAKVEPKVGALASTPCGVCPRISH
CTPNGVISPRTCVYYTKWLDF