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Sed0021005 (gene) of Chayote v1 genome

Gene IDSed0021005
OrganismSechium edule (Chayote v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationLG06:17345244..17345465
RNA-Seq ExpressionSed0021005
SyntenySed0021005
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046252.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.6e-1358.9Show/hide
Query:  MSVMMADADTSGDERITELERKIEMLLKTVEDKEFEITSLKHYLETRDAAESNQTHVVKTNGKGKTLMQEVQP
        MSVM+ D DTS D R+TELE+K+ ML+K VE+++FEI  LK+++E+RDAAES+ TH +K   KGK +MQE QP
Subjt:  MSVMMADADTSGDERITELERKIEMLLKTVEDKEFEITSLKHYLETRDAAESNQTHVVKTNGKGKTLMQEVQP
KAA0050518.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.5e-1357.53Show/hide
Query:  MSVMMADADTSGDERITELERKIEMLLKTVEDKEFEITSLKHYLETRDAAESNQTHVVKTNGKGKTLMQEVQP
        MSVM+ D DTS ++R+ ELE+K+ ML+K VE+K+FEI  LK+++E+RDAAES+ TH +K   KGK +MQE QP
Subjt:  MSVMMADADTSGDERITELERKIEMLLKTVEDKEFEITSLKHYLETRDAAESNQTHVVKTNGKGKTLMQEVQP
KAA0051994.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.5e-1356.16Show/hide
Query:  MSVMMADADTSGDERITELERKIEMLLKTVEDKEFEITSLKHYLETRDAAESNQTHVVKTNGKGKTLMQEVQP
        MSVM+ D DTS ++R+ ELE+K+ ML+K VE+++FEI SLK+++E+RDA ES+ TH++K   KGK +MQE QP
Subjt:  MSVMMADADTSGDERITELERKIEMLLKTVEDKEFEITSLKHYLETRDAAESNQTHVVKTNGKGKTLMQEVQP
KAA0057696.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.2e-1357.53Show/hide
Query:  MSVMMADADTSGDERITELERKIEMLLKTVEDKEFEITSLKHYLETRDAAESNQTHVVKTNGKGKTLMQEVQP
        MSVM+ D DTS ++R+ ELE+K+ ML+K VE+++FEI SLK+++E+RDAAES+ TH++K   KGK +MQE QP
Subjt:  MSVMMADADTSGDERITELERKIEMLLKTVEDKEFEITSLKHYLETRDAAESNQTHVVKTNGKGKTLMQEVQP
TYJ99754.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.2e-1360.27Show/hide
Query:  MSVMMADADTSGDERITELERKIEMLLKTVEDKEFEITSLKHYLETRDAAESNQTHVVKTNGKGKTLMQEVQP
        MS+M  D DTS D R+TELE+KI ML+K VE++++EI SLK+++E+RDAAES+ TH  K   KGKT+MQE QP
Subjt:  MSVMMADADTSGDERITELERKIEMLLKTVEDKEFEITSLKHYLETRDAAESNQTHVVKTNGKGKTLMQEVQP
TrEMBL top hitse value%identityAlignment
A0A5A7U5H1 Ty3-gypsy retrotransposon protein1.7e-1357.53Show/hide
Query:  MSVMMADADTSGDERITELERKIEMLLKTVEDKEFEITSLKHYLETRDAAESNQTHVVKTNGKGKTLMQEVQP
        MSVM+ D DTS ++R+ ELE+K+ ML+K VE+K+FEI  LK+++E+RDAAES+ TH +K   KGK +MQE QP
Subjt:  MSVMMADADTSGDERITELERKIEMLLKTVEDKEFEITSLKHYLETRDAAESNQTHVVKTNGKGKTLMQEVQP
A0A5A7U9H0 Ty3-gypsy retrotransposon protein1.7e-1356.16Show/hide
Query:  MSVMMADADTSGDERITELERKIEMLLKTVEDKEFEITSLKHYLETRDAAESNQTHVVKTNGKGKTLMQEVQP
        MSVM+ D DTS ++R+ ELE+K+ ML+K VE+++FEI SLK+++E+RDA ES+ TH++K   KGK +MQE QP
Subjt:  MSVMMADADTSGDERITELERKIEMLLKTVEDKEFEITSLKHYLETRDAAESNQTHVVKTNGKGKTLMQEVQP
A0A5A7UU70 Ty3-gypsy retrotransposon protein5.9e-1457.53Show/hide
Query:  MSVMMADADTSGDERITELERKIEMLLKTVEDKEFEITSLKHYLETRDAAESNQTHVVKTNGKGKTLMQEVQP
        MSVM+ D DTS ++R+ ELE+K+ ML+K VE+++FEI SLK+++E+RDAAES+ TH++K   KGK +MQE QP
Subjt:  MSVMMADADTSGDERITELERKIEMLLKTVEDKEFEITSLKHYLETRDAAESNQTHVVKTNGKGKTLMQEVQP
A0A5D3BL51 Ty3-gypsy retrotransposon protein5.9e-1460.27Show/hide
Query:  MSVMMADADTSGDERITELERKIEMLLKTVEDKEFEITSLKHYLETRDAAESNQTHVVKTNGKGKTLMQEVQP
        MS+M  D DTS D R+TELE+KI ML+K VE++++EI SLK+++E+RDAAES+ TH  K   KGKT+MQE QP
Subjt:  MSVMMADADTSGDERITELERKIEMLLKTVEDKEFEITSLKHYLETRDAAESNQTHVVKTNGKGKTLMQEVQP
A0A5D3D5V7 Ty3-gypsy retrotransposon protein7.7e-1458.9Show/hide
Query:  MSVMMADADTSGDERITELERKIEMLLKTVEDKEFEITSLKHYLETRDAAESNQTHVVKTNGKGKTLMQEVQP
        MSVM+ D DTS D R+TELE+K+ ML+K VE+++FEI  LK+++E+RDAAES+ TH +K   KGK +MQE QP
Subjt:  MSVMMADADTSGDERITELERKIEMLLKTVEDKEFEITSLKHYLETRDAAESNQTHVVKTNGKGKTLMQEVQP
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGTGATGATGGCTGATGCAGATACATCAGGCGATGAGAGAATAACAGAACTTGAAAGAAAAATAGAGATGTTATTGAAAACAGTTGAAGATAAAGAGTTTGAAAT
TACTTCTCTGAAGCATTACCTTGAGACTCGGGATGCTGCTGAATCTAATCAAACACATGTTGTAAAGACTAATGGAAAAGGGAAAACTCTTATGCAAGAAGTTCAACCCT
AA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGTGATGATGGCTGATGCAGATACATCAGGCGATGAGAGAATAACAGAACTTGAAAGAAAAATAGAGATGTTATTGAAAACAGTTGAAGATAAAGAGTTTGAAAT
TACTTCTCTGAAGCATTACCTTGAGACTCGGGATGCTGCTGAATCTAATCAAACACATGTTGTAAAGACTAATGGAAAAGGGAAAACTCTTATGCAAGAAGTTCAACCCT
AA
Protein sequenceShow/hide protein sequence
MSVMMADADTSGDERITELERKIEMLLKTVEDKEFEITSLKHYLETRDAAESNQTHVVKTNGKGKTLMQEVQP