CuGenDBv2

Gene ID	Sed0021036
Organism	Sechium edule (Chayote v1)
Description	50S ribosomal protein L32, chloroplastic
Genome location	LG07:34039351..34042938
RNA-Seq Expression	Sed0021036
Synteny	Sed0021036
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005762 - mitochondrial large ribosomal subunit (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR002677 - Ribosomal protein L32p IPR011332 - Zinc-binding ribosomal protein

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6574067.1 hypothetical protein SDJN03_27954, partial [Cucurbita argyrosperma subsp. sororia]

1.9e-52

75.91

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Query:  MALRIMRALEGQTGSMLGFKAIASVFPHPSPMSEIMDSKDFAPPLVLPEFNHESDSNRINSNGVVEFGFPTLPFSASMELMAVPKRKVSPHKRGIRNGPK
        MALRI+RA+EGQTGSM G KA+  V PH SP+S IMD KD APPLVLPEFNHESD + IN+  +V FGFP+L FS SMELMAVPKRK SPHKRGIRNGPK
Subjt:  MALRIMRALEGQTGSMLGFKAIASVFPHPSPMSEIMDSKDFAPPLVLPEFNHESDSNRINSNGVVEFGFPTLPFSASMELMAVPKRKVSPHKRGIRNGPK

Query:  ALKPIPVIHRCRTCGKVKLPHFYCCSGRPEELHSSAR
        ALKPIPVI RC++CGKVKLPHFYCCSGR  E  +SAR
Subjt:  ALKPIPVIHRCRTCGKVKLPHFYCCSGRPEELHSSAR

KAG7013127.1 hypothetical protein SDJN02_25883 [Cucurbita argyrosperma subsp. argyrosperma]

1.6e-51

74.45

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Query:  MALRIMRALEGQTGSMLGFKAIASVFPHPSPMSEIMDSKDFAPPLVLPEFNHESDSNRINSNGVVEFGFPTLPFSASMELMAVPKRKVSPHKRGIRNGPK
        MALRI+RA+EGQTGSM G KA+  V PH SP++ I+D KD APPLVLPEFNHESD   IN+  +V FGFP+L FS SMELMAVPKRK SPHKRGIRNGPK
Subjt:  MALRIMRALEGQTGSMLGFKAIASVFPHPSPMSEIMDSKDFAPPLVLPEFNHESDSNRINSNGVVEFGFPTLPFSASMELMAVPKRKVSPHKRGIRNGPK

Query:  ALKPIPVIHRCRTCGKVKLPHFYCCSGRPEELHSSAR
        ALKPIPVI RC++CGKVKLPHFYCCSGR  E  +SAR
Subjt:  ALKPIPVIHRCRTCGKVKLPHFYCCSGRPEELHSSAR

XP_022945635.1 uncharacterized protein LOC111449817 [Cucurbita moschata]

3.6e-51

74.45

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Query:  MALRIMRALEGQTGSMLGFKAIASVFPHPSPMSEIMDSKDFAPPLVLPEFNHESDSNRINSNGVVEFGFPTLPFSASMELMAVPKRKVSPHKRGIRNGPK
        MALRI+RA+EGQTGSM G KA+A+V PH SP++ I+  KD APPLVLPEFNHESD + IN+  +V FGFP+L FS SMELMAVPKRK SPHKRGIRNGPK
Subjt:  MALRIMRALEGQTGSMLGFKAIASVFPHPSPMSEIMDSKDFAPPLVLPEFNHESDSNRINSNGVVEFGFPTLPFSASMELMAVPKRKVSPHKRGIRNGPK

Query:  ALKPIPVIHRCRTCGKVKLPHFYCCSGRPEELHSSAR
        ALKPIPVI RC++CGKVKLPHFYCCSGR  E  +SAR
Subjt:  ALKPIPVIHRCRTCGKVKLPHFYCCSGRPEELHSSAR

XP_022968104.1 uncharacterized protein LOC111467436 [Cucurbita maxima]

2.3e-53

77.37

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Query:  MALRIMRALEGQTGSMLGFKAIASVFPHPSPMSEIMDSKDFAPPLVLPEFNHESDSNRINSNGVVEFGFPTLPFSASMELMAVPKRKVSPHKRGIRNGPK
        MALRI+RA+EGQTGSM G KA+A V PH SP+S IMD KD APPLVLPEFNHESD + IN+  +V FGFP+L FS SMELMAVPKRKVSPHKRGIRNGPK
Subjt:  MALRIMRALEGQTGSMLGFKAIASVFPHPSPMSEIMDSKDFAPPLVLPEFNHESDSNRINSNGVVEFGFPTLPFSASMELMAVPKRKVSPHKRGIRNGPK

Query:  ALKPIPVIHRCRTCGKVKLPHFYCCSGRPEELHSSAR
        ALKPIPVI RC++CGKVKLPHFYCCSGR  E  +SAR
Subjt:  ALKPIPVIHRCRTCGKVKLPHFYCCSGRPEELHSSAR

XP_023541204.1 uncharacterized protein LOC111801437 [Cucurbita pepo subsp. pepo]

2.9e-53

76.64

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Query:  MALRIMRALEGQTGSMLGFKAIASVFPHPSPMSEIMDSKDFAPPLVLPEFNHESDSNRINSNGVVEFGFPTLPFSASMELMAVPKRKVSPHKRGIRNGPK
        MALRI+RA+EGQTGSM G KA+  V PH SP+S IMD KD APPLVLPEFNHESD +RIN+  +V FGFP+L FS SMELMAVPKRK SPHKRGIRNGPK
Subjt:  MALRIMRALEGQTGSMLGFKAIASVFPHPSPMSEIMDSKDFAPPLVLPEFNHESDSNRINSNGVVEFGFPTLPFSASMELMAVPKRKVSPHKRGIRNGPK

Query:  ALKPIPVIHRCRTCGKVKLPHFYCCSGRPEELHSSAR
        ALKPIPVI RC++CGKVKLPHFYCCSGR  E  +SAR
Subjt:  ALKPIPVIHRCRTCGKVKLPHFYCCSGRPEELHSSAR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KQP7 50S ribosomal protein L32, chloroplastic

1.5e-47

70.59

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Query:  MALRIMRALEGQTGSMLGFKAIASVFPHPSPMSEIMDSKDFAPPLVLPEFNHESDSNRINSNGVVEFGFPTLPFSASMELMAVPKRKVSPHKRGIRNGPK
        MALRIMRALEGQ GSMLG KA+A   PH SP+S +M  KD  PPLVLPEFN E D ++ N+  +V FGFP+L FS SMELMAVPK+KVSPHKR IRN PK
Subjt:  MALRIMRALEGQTGSMLGFKAIASVFPHPSPMSEIMDSKDFAPPLVLPEFNHESDSNRINSNGVVEFGFPTLPFSASMELMAVPKRKVSPHKRGIRNGPK

Query:  ALKPIPVIHRCRTCGKVKLPHFYCCSGRPEELHSSA
        ALKPIPVI RC+ CGKVKLPH+YCCSGRP +  +SA
Subjt:  ALKPIPVIHRCRTCGKVKLPHFYCCSGRPEELHSSA

A0A5A7SYB6 50S ribosomal protein L32, chloroplastic

7.6e-47

72.79

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Query:  MALRIMRALEGQTGSMLGFKAIASVFPHPSPMSEIMDSKDFAPPLVLPEFNHESDSNRINSNGVVEFGFPTLPFSASMELMAVPKRKVSPHKRGIRNGPK
        MALRIMRALEGQTGSMLG KA+A   PH S    +M  KD  PPLVLPEFN ESD +RIN+  +V FGFP+L FS SMELMAVPK+KVSPHKR IRN PK
Subjt:  MALRIMRALEGQTGSMLGFKAIASVFPHPSPMSEIMDSKDFAPPLVLPEFNHESDSNRINSNGVVEFGFPTLPFSASMELMAVPKRKVSPHKRGIRNGPK

Query:  ALKPIPVIHRCRTCGKVKLPHFYCCSGRPEELHSSA
        ALKPIPVI RC+ CGKVKLPH+YCCSGRP E  +SA
Subjt:  ALKPIPVIHRCRTCGKVKLPHFYCCSGRPEELHSSA

A0A6J1DBR3 50S ribosomal protein L32, chloroplastic

8.7e-51

80.31

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Query:  MALRIMRALEGQTGSMLGFKAIASVFPHPSPMSEIMDSKDFAPPLVLPEFNHESDSNRINSNGVVEFGFPTLPFSASMELMAVPKRKVSPHKRGIRNGPK
        MALRIMRA+EGQT SMLG KA+A+V PH SP+S IMD KD  PPLVLPEFNHESDS+RI +   V FGFP+L FS SMELMAVPKRKVSPHKRGIRNGPK
Subjt:  MALRIMRALEGQTGSMLGFKAIASVFPHPSPMSEIMDSKDFAPPLVLPEFNHESDSNRINSNGVVEFGFPTLPFSASMELMAVPKRKVSPHKRGIRNGPK

Query:  ALKPIPVIHRCRTCGKVKLPHFYCCSG
        ALKPIPVI RC++CGKVKLPHFYCCSG
Subjt:  ALKPIPVIHRCRTCGKVKLPHFYCCSG

A0A6J1G1I2 50S ribosomal protein L32, chloroplastic

1.7e-51

74.45

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Query:  MALRIMRALEGQTGSMLGFKAIASVFPHPSPMSEIMDSKDFAPPLVLPEFNHESDSNRINSNGVVEFGFPTLPFSASMELMAVPKRKVSPHKRGIRNGPK
        MALRI+RA+EGQTGSM G KA+A+V PH SP++ I+  KD APPLVLPEFNHESD + IN+  +V FGFP+L FS SMELMAVPKRK SPHKRGIRNGPK
Subjt:  MALRIMRALEGQTGSMLGFKAIASVFPHPSPMSEIMDSKDFAPPLVLPEFNHESDSNRINSNGVVEFGFPTLPFSASMELMAVPKRKVSPHKRGIRNGPK

Query:  ALKPIPVIHRCRTCGKVKLPHFYCCSGRPEELHSSAR
        ALKPIPVI RC++CGKVKLPHFYCCSGR  E  +SAR
Subjt:  ALKPIPVIHRCRTCGKVKLPHFYCCSGRPEELHSSAR

A0A6J1HYN6 50S ribosomal protein L32, chloroplastic

1.1e-53

77.37

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Query:  MALRIMRALEGQTGSMLGFKAIASVFPHPSPMSEIMDSKDFAPPLVLPEFNHESDSNRINSNGVVEFGFPTLPFSASMELMAVPKRKVSPHKRGIRNGPK
        MALRI+RA+EGQTGSM G KA+A V PH SP+S IMD KD APPLVLPEFNHESD + IN+  +V FGFP+L FS SMELMAVPKRKVSPHKRGIRNGPK
Subjt:  MALRIMRALEGQTGSMLGFKAIASVFPHPSPMSEIMDSKDFAPPLVLPEFNHESDSNRINSNGVVEFGFPTLPFSASMELMAVPKRKVSPHKRGIRNGPK

Query:  ALKPIPVIHRCRTCGKVKLPHFYCCSGRPEELHSSAR
        ALKPIPVI RC++CGKVKLPHFYCCSGR  E  +SAR
Subjt:  ALKPIPVIHRCRTCGKVKLPHFYCCSGRPEELHSSAR

SwissProt top hits

e value

%identity

Alignment

Q1GT88 50S ribosomal protein L32

1.5e-04

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Query:  MAVPKRKVSPHKRGIRNGPKALKPIPVIHRCRTCGKVKLPHFYC
        MAVPKRK SP KRG+R    +LK +     C  CG++K PH  C
Subjt:  MAVPKRKVSPHKRGIRNGPKALKPIPVIHRCRTCGKVKLPHFYC

Q2G5R9 50S ribosomal protein L32

6.9e-05

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Query:  MAVPKRKVSPHKRGIRNGPKALKPIPVIHRCRTCGKVKLPHFYC
        MAVPKRK SP +RG+R    AL      H C  CG++K PH  C
Subjt:  MAVPKRKVSPHKRGIRNGPKALKPIPVIHRCRTCGKVKLPHFYC

Q2N923 50S ribosomal protein L32

2.1e-06

54.55

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Query:  MAVPKRKVSPHKRGIRNGPKALKPIPVIHRCRTCGKVKLPHFYC
        MAVPKRKVSPH+RG R    +LK +   H C  CG++K PH  C
Subjt:  MAVPKRKVSPHKRGIRNGPKALKPIPVIHRCRTCGKVKLPHFYC

Arabidopsis top hits

e value

%identity

Alignment

AT1G26740.1 Ribosomal L32p protein family

4.4e-31

50.75

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Query:  MALRI--MRALEGQTGSMLGFKAIASVFPHPSPMSEIMDSKDFAPPLVLPEFNHESDSNRINSNGVVE-----FGFPTLPFSASMELMAVPKRKVSPHKR
        MALR+  ++    ++  +L  ++++ V   PSP++   D     PPLVLPEF+        N  G++E     FG P+  F+ SMELMAVPK+K+S HKR
Subjt:  MALRI--MRALEGQTGSMLGFKAIASVFPHPSPMSEIMDSKDFAPPLVLPEFNHESDSNRINSNGVVE-----FGFPTLPFSASMELMAVPKRKVSPHKR

Query:  GIRNGPKALKPIPVIHRCRTCGKVKLPHFYCCSG
        GIRNGPKALKP+PVI RCR+CG+VKLPHF+CCSG
Subjt:  GIRNGPKALKPIPVIHRCRTCGKVKLPHFYCCSG

AT1G69485.1 Ribosomal L32p protein family

3.2e-21

73.77

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Query:  MELMAVPKRKVSPHKRGIRNGPKALKPIPVIHRCRTCGKVKLPHFYCCSGR---PEELHSS
        MELMAVPK+K+S HKRGIRNGPKA KP PVI RCR+CG+VKLPHFYCCSG    P+E  +S
Subjt:  MELMAVPKRKVSPHKRGIRNGPKALKPIPVIHRCRTCGKVKLPHFYCCSGR---PEELHSS

Sequences

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CDS sequence

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ATGGCGTTGAGGATCATGAGGGCGCTCGAGGGTCAAACCGGTTCGATGTTAGGGTTCAAAGCGATCGCTAGTGTATTTCCCCATCCTTCGCCGATGTCTGAGATCATGGA
CAGTAAGGATTTCGCGCCGCCGCTTGTTCTGCCGGAGTTTAACCATGAATCTGATAGCAATAGAATCAACAGCAACGGTGTAGTGGAATTTGGTTTCCCTACTTTACCCT
TTTCAGCTTCCATGGAGCTCATGGCTGTTCCTAAGAGGAAGGTTTCTCCACATAAAAGGGGCATAAGAAATGGCCCGAAAGCTCTGAAACCAATTCCAGTTATACATCGG
TGTAGGACTTGTGGTAAAGTCAAGCTTCCGCACTTCTATTGTTGCAGTGGAAGGCCAGAGGAGCTGCATAGCTCAGCCAGGTGA

mRNA sequence

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GGCCGACTAAGGGATTGAAGCCCATGGTCGGCCCATTGGCTCAGAACAAAGTTTAACCAACGGCGTCGATGCTTGTTGCAGCCATTTCCAAATTCCTAAACCCCGCTCTG
TTTTCTTGGTCCGATTTCCACCGCCGGCGTGCTTTCTCGTAGCTATGGCGTTGAGGATCATGAGGGCGCTCGAGGGTCAAACCGGTTCGATGTTAGGGTTCAAAGCGATC
GCTAGTGTATTTCCCCATCCTTCGCCGATGTCTGAGATCATGGACAGTAAGGATTTCGCGCCGCCGCTTGTTCTGCCGGAGTTTAACCATGAATCTGATAGCAATAGAAT
CAACAGCAACGGTGTAGTGGAATTTGGTTTCCCTACTTTACCCTTTTCAGCTTCCATGGAGCTCATGGCTGTTCCTAAGAGGAAGGTTTCTCCACATAAAAGGGGCATAA
GAAATGGCCCGAAAGCTCTGAAACCAATTCCAGTTATACATCGGTGTAGGACTTGTGGTAAAGTCAAGCTTCCGCACTTCTATTGTTGCAGTGGAAGGCCAGAGGAGCTG
CATAGCTCAGCCAGGTGAGCCAATGCAGAGCCAGGACACTGTAAAGGCTTAAATCCCGTAGAATCGTGTTTCCGACCTGGGAGCTACAGTTTCCTGTTATCTATTCTTCT
TTATCAACTTCTTTAAATTTTTCGTTCGATGTCTTCCGGTGCCTGGCCTAGGGACGGGCGTGGTTACTCTTGTTTAAAAAAAAAAAGTTCTTTAAATTTTGGTTCTCTTT
TTAAAAAAAATATGATCTTCATTGTATGGCAGATAGTAAGATTTCGATATGTTATAAGTAACCATTAATTAGCTTTTGAGCCACACATCCGTGCTTTGTACTTAACCAGC
AGACTTTAGTTCCTCTGAAATGCG

Protein sequence

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MALRIMRALEGQTGSMLGFKAIASVFPHPSPMSEIMDSKDFAPPLVLPEFNHESDSNRINSNGVVEFGFPTLPFSASMELMAVPKRKVSPHKRGIRNGPKALKPIPVIHR
CRTCGKVKLPHFYCCSGRPEELHSSAR

Sed0021036 (gene) of Chayote v1 genome