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Sed0021058 (gene) of Chayote v1 genome

Gene IDSed0021058
OrganismSechium edule (Chayote v1)
DescriptionPMD domain-containing protein
Genome locationLG03:39711882..39712367
RNA-Seq ExpressionSed0021058
SyntenySed0021058
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN34118.1 hypothetical protein [Cucumis melo subsp. melo]9.1e-4653.21Show/hide
Query:  MAEGHVFSLVVPTLANLYHGLGIITRASNPIGRVDVCLPMHFIHGWLAYYFKTHFEIPKKIRGARMVDFSGEGGAIHFDEYEARELIHHGGSIAWNATIH
        MA G ++SL V  LAN+YHGLG+IT+ASNPI  +D   PMH++HGWLA+YF TH+ +P ++RG +M +FSGEGG+I+F EYEARELIH+G  I W+A + 
Subjt:  MAEGHVFSLVVPTLANLYHGLGIITRASNPIGRVDVCLPMHFIHGWLAYYFKTHFEIPKKIRGARMVDFSGEGGAIHFDEYEARELIHHGGSIAWNATIH

Query:  GRNKYEEITDNQNISSFESSYLISLRSCYLSARFGDSLIIEPYNPHRIGQQFRFFK
         R+K+E + D  + S  + SY +S+RSCYLS+R  ++ II  Y+P+R+G+QF F++
Subjt:  GRNKYEEITDNQNISSFESSYLISLRSCYLSARFGDSLIIEPYNPHRIGQQFRFFK

KAA0025356.1 hypothetical protein E6C27_scaffold1204G00400 [Cucumis melo var. makuwa]4.5e-4552.56Show/hide
Query:  MAEGHVFSLVVPTLANLYHGLGIITRASNPIGRVDVCLPMHFIHGWLAYYFKTHFEIPKKIRGARMVDFSGEGGAIHFDEYEARELIHHGGSIAWNATIH
        MA   ++SL VP LAN+YHGLG+IT+ASNPIGR+D   PMH++HGWLA+YF TH+ +P ++RG +M +FSGEGG+I+F EYEARELIH+G  I W+A + 
Subjt:  MAEGHVFSLVVPTLANLYHGLGIITRASNPIGRVDVCLPMHFIHGWLAYYFKTHFEIPKKIRGARMVDFSGEGGAIHFDEYEARELIHHGGSIAWNATIH

Query:  GRNKYEEITDNQNISSFESSYLISLRSCYLSARFGDSLIIEPYNPHRIGQQFRFFK
         R+K+E + D  + S  + SY +S+ SCYLS+R  ++ II  Y+P++  +QF F++
Subjt:  GRNKYEEITDNQNISSFESSYLISLRSCYLSARFGDSLIIEPYNPHRIGQQFRFFK

KAA0047478.1 hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa]4.4e-4854.49Show/hide
Query:  MAEGHVFSLVVPTLANLYHGLGIITRASNPIGRVDVCLPMHFIHGWLAYYFKTHFEIPKKIRGARMVDFSGEGGAIHFDEYEARELIHHGGSIAWNATIH
        MA G ++SL VP LAN+YHGLG+IT+ASNPIGR+D   PMH++HGWLA+YF TH+ +P ++RG +M +FS EGG+I+F EYEARELIH+G  I W+A++ 
Subjt:  MAEGHVFSLVVPTLANLYHGLGIITRASNPIGRVDVCLPMHFIHGWLAYYFKTHFEIPKKIRGARMVDFSGEGGAIHFDEYEARELIHHGGSIAWNATIH

Query:  GRNKYEEITDNQNISSFESSYLISLRSCYLSARFGDSLIIEPYNPHRIGQQFRFFK
         R+K+E + D  + S  ++SY +S+RSCYLS+R  ++ II  Y+P+R G+QF F++
Subjt:  GRNKYEEITDNQNISSFESSYLISLRSCYLSARFGDSLIIEPYNPHRIGQQFRFFK

KAA0053466.1 hypothetical protein E6C27_scaffold190G00140 [Cucumis melo var. makuwa]4.7e-5056.41Show/hide
Query:  MAEGHVFSLVVPTLANLYHGLGIITRASNPIGRVDVCLPMHFIHGWLAYYFKTHFEIPKKIRGARMVDFSGEGGAIHFDEYEARELIHHGGSIAWNATIH
        MA G ++SL VP LAN+YHGLG+IT+ASNPIGR+D   PMH++HGWLA+YF TH+ +P+++RG +M +FSGEGG+I+F EYEARELIH+G  I W+A +H
Subjt:  MAEGHVFSLVVPTLANLYHGLGIITRASNPIGRVDVCLPMHFIHGWLAYYFKTHFEIPKKIRGARMVDFSGEGGAIHFDEYEARELIHHGGSIAWNATIH

Query:  GRNKYEEITDNQNISSFESSYLISLRSCYLSARFGDSLIIEPYNPHRIGQQFRFFK
         RNK+E + D  + S  + SY +S+RSCYLS+R  ++ II  Y+P+R G+QF F++
Subjt:  GRNKYEEITDNQNISSFESSYLISLRSCYLSARFGDSLIIEPYNPHRIGQQFRFFK

KAA0065375.1 hypothetical protein E6C27_scaffold17G00370 [Cucumis melo var. makuwa]4.1e-4652.56Show/hide
Query:  MAEGHVFSLVVPTLANLYHGLGIITRASNPIGRVDVCLPMHFIHGWLAYYFKTHFEIPKKIRGARMVDFSGEGGAIHFDEYEARELIHHGGSIAWNATIH
        M  G ++SL VP LAN+YHGLG+IT+ASNP GR+D   PMH++HGWLA+YF TH+ +P ++RG +M +FSGEGG+I+F EYEAR+LIH+G  I W+A + 
Subjt:  MAEGHVFSLVVPTLANLYHGLGIITRASNPIGRVDVCLPMHFIHGWLAYYFKTHFEIPKKIRGARMVDFSGEGGAIHFDEYEARELIHHGGSIAWNATIH

Query:  GRNKYEEITDNQNISSFESSYLISLRSCYLSARFGDSLIIEPYNPHRIGQQFRFFK
          +K+E + D  + S  + SY +S+RSCYLS+R  ++ II  Y+P+R G+QF F++
Subjt:  GRNKYEEITDNQNISSFESSYLISLRSCYLSARFGDSLIIEPYNPHRIGQQFRFFK

TrEMBL top hitse value%identityAlignment
A0A5A7SHN8 PMD domain-containing protein2.2e-4552.56Show/hide
Query:  MAEGHVFSLVVPTLANLYHGLGIITRASNPIGRVDVCLPMHFIHGWLAYYFKTHFEIPKKIRGARMVDFSGEGGAIHFDEYEARELIHHGGSIAWNATIH
        MA   ++SL VP LAN+YHGLG+IT+ASNPIGR+D   PMH++HGWLA+YF TH+ +P ++RG +M +FSGEGG+I+F EYEARELIH+G  I W+A + 
Subjt:  MAEGHVFSLVVPTLANLYHGLGIITRASNPIGRVDVCLPMHFIHGWLAYYFKTHFEIPKKIRGARMVDFSGEGGAIHFDEYEARELIHHGGSIAWNATIH

Query:  GRNKYEEITDNQNISSFESSYLISLRSCYLSARFGDSLIIEPYNPHRIGQQFRFFK
         R+K+E + D  + S  + SY +S+ SCYLS+R  ++ II  Y+P++  +QF F++
Subjt:  GRNKYEEITDNQNISSFESSYLISLRSCYLSARFGDSLIIEPYNPHRIGQQFRFFK

A0A5A7TX42 Uncharacterized protein2.1e-4854.49Show/hide
Query:  MAEGHVFSLVVPTLANLYHGLGIITRASNPIGRVDVCLPMHFIHGWLAYYFKTHFEIPKKIRGARMVDFSGEGGAIHFDEYEARELIHHGGSIAWNATIH
        MA G ++SL VP LAN+YHGLG+IT+ASNPIGR+D   PMH++HGWLA+YF TH+ +P ++RG +M +FS EGG+I+F EYEARELIH+G  I W+A++ 
Subjt:  MAEGHVFSLVVPTLANLYHGLGIITRASNPIGRVDVCLPMHFIHGWLAYYFKTHFEIPKKIRGARMVDFSGEGGAIHFDEYEARELIHHGGSIAWNATIH

Query:  GRNKYEEITDNQNISSFESSYLISLRSCYLSARFGDSLIIEPYNPHRIGQQFRFFK
         R+K+E + D  + S  ++SY +S+RSCYLS+R  ++ II  Y+P+R G+QF F++
Subjt:  GRNKYEEITDNQNISSFESSYLISLRSCYLSARFGDSLIIEPYNPHRIGQQFRFFK

A0A5A7UGW6 PMD domain-containing protein2.3e-5056.41Show/hide
Query:  MAEGHVFSLVVPTLANLYHGLGIITRASNPIGRVDVCLPMHFIHGWLAYYFKTHFEIPKKIRGARMVDFSGEGGAIHFDEYEARELIHHGGSIAWNATIH
        MA G ++SL VP LAN+YHGLG+IT+ASNPIGR+D   PMH++HGWLA+YF TH+ +P+++RG +M +FSGEGG+I+F EYEARELIH+G  I W+A +H
Subjt:  MAEGHVFSLVVPTLANLYHGLGIITRASNPIGRVDVCLPMHFIHGWLAYYFKTHFEIPKKIRGARMVDFSGEGGAIHFDEYEARELIHHGGSIAWNATIH

Query:  GRNKYEEITDNQNISSFESSYLISLRSCYLSARFGDSLIIEPYNPHRIGQQFRFFK
         RNK+E + D  + S  + SY +S+RSCYLS+R  ++ II  Y+P+R G+QF F++
Subjt:  GRNKYEEITDNQNISSFESSYLISLRSCYLSARFGDSLIIEPYNPHRIGQQFRFFK

A0A5A7VHW8 PMD domain-containing protein2.0e-4652.56Show/hide
Query:  MAEGHVFSLVVPTLANLYHGLGIITRASNPIGRVDVCLPMHFIHGWLAYYFKTHFEIPKKIRGARMVDFSGEGGAIHFDEYEARELIHHGGSIAWNATIH
        M  G ++SL VP LAN+YHGLG+IT+ASNP GR+D   PMH++HGWLA+YF TH+ +P ++RG +M +FSGEGG+I+F EYEAR+LIH+G  I W+A + 
Subjt:  MAEGHVFSLVVPTLANLYHGLGIITRASNPIGRVDVCLPMHFIHGWLAYYFKTHFEIPKKIRGARMVDFSGEGGAIHFDEYEARELIHHGGSIAWNATIH

Query:  GRNKYEEITDNQNISSFESSYLISLRSCYLSARFGDSLIIEPYNPHRIGQQFRFFK
          +K+E + D  + S  + SY +S+RSCYLS+R  ++ II  Y+P+R G+QF F++
Subjt:  GRNKYEEITDNQNISSFESSYLISLRSCYLSARFGDSLIIEPYNPHRIGQQFRFFK

E5GCB9 PMD domain-containing protein4.4e-4653.21Show/hide
Query:  MAEGHVFSLVVPTLANLYHGLGIITRASNPIGRVDVCLPMHFIHGWLAYYFKTHFEIPKKIRGARMVDFSGEGGAIHFDEYEARELIHHGGSIAWNATIH
        MA G ++SL V  LAN+YHGLG+IT+ASNPI  +D   PMH++HGWLA+YF TH+ +P ++RG +M +FSGEGG+I+F EYEARELIH+G  I W+A + 
Subjt:  MAEGHVFSLVVPTLANLYHGLGIITRASNPIGRVDVCLPMHFIHGWLAYYFKTHFEIPKKIRGARMVDFSGEGGAIHFDEYEARELIHHGGSIAWNATIH

Query:  GRNKYEEITDNQNISSFESSYLISLRSCYLSARFGDSLIIEPYNPHRIGQQFRFFK
         R+K+E + D  + S  + SY +S+RSCYLS+R  ++ II  Y+P+R+G+QF F++
Subjt:  GRNKYEEITDNQNISSFESSYLISLRSCYLSARFGDSLIIEPYNPHRIGQQFRFFK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGAGGGTCACGTCTTTAGCCTTGTTGTCCCAACCTTAGCTAACTTATACCATGGATTAGGTATAATCACTCGGGCTTCTAACCCGATCGGGCGTGTAGACGTTTG
TTTGCCTATGCATTTCATTCATGGATGGCTTGCTTATTATTTCAAAACACATTTTGAAATTCCAAAGAAAATTCGAGGTGCTCGAATGGTTGATTTCTCTGGCGAAGGTG
GTGCTATACATTTTGATGAGTACGAAGCTCGAGAATTGATTCATCATGGAGGATCTATTGCATGGAATGCAACTATTCACGGAAGAAATAAATATGAAGAAATAACAGAT
AATCAGAATATATCATCTTTCGAGTCCTCATACCTCATTAGCCTTCGATCGTGTTACTTATCTGCTCGATTTGGTGATTCATTGATTATTGAACCCTACAATCCTCATCG
AATTGGGCAACAATTCAGATTTTTCAAGACATCCCATATGACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTGAGGGTCACGTCTTTAGCCTTGTTGTCCCAACCTTAGCTAACTTATACCATGGATTAGGTATAATCACTCGGGCTTCTAACCCGATCGGGCGTGTAGACGTTTG
TTTGCCTATGCATTTCATTCATGGATGGCTTGCTTATTATTTCAAAACACATTTTGAAATTCCAAAGAAAATTCGAGGTGCTCGAATGGTTGATTTCTCTGGCGAAGGTG
GTGCTATACATTTTGATGAGTACGAAGCTCGAGAATTGATTCATCATGGAGGATCTATTGCATGGAATGCAACTATTCACGGAAGAAATAAATATGAAGAAATAACAGAT
AATCAGAATATATCATCTTTCGAGTCCTCATACCTCATTAGCCTTCGATCGTGTTACTTATCTGCTCGATTTGGTGATTCATTGATTATTGAACCCTACAATCCTCATCG
AATTGGGCAACAATTCAGATTTTTCAAGACATCCCATATGACTTAG
Protein sequenceShow/hide protein sequence
MAEGHVFSLVVPTLANLYHGLGIITRASNPIGRVDVCLPMHFIHGWLAYYFKTHFEIPKKIRGARMVDFSGEGGAIHFDEYEARELIHHGGSIAWNATIHGRNKYEEITD
NQNISSFESSYLISLRSCYLSARFGDSLIIEPYNPHRIGQQFRFFKTSHMT