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Sed0021085 (gene) of Chayote v1 genome

Gene IDSed0021085
OrganismSechium edule (Chayote v1)
Descriptionreplication protein A 14 kDa subunit B
Genome locationLG04:29600900..29602787
RNA-Seq ExpressionSed0021085
SyntenySed0021085
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0006281 - DNA repair (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0031981 - nuclear lumen (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold
IPR013970 - Replication factor A protein 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6580705.1 ABC transporter B family member 29, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]8.3e-5192.66Show/hide
Query:  MNQMDTSNPSVFVNAELLRMYVGRRVRAVIQVQSEGNGVVYGKSTDDDQMIVKGSPPFLLSKFVEIIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLA
        +NQMDTSNPSVFVNAELLR+YVGRRVRAVIQVQSEGNGV+YGKSTDD Q+ VKGSPPF LSKFVE+IGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLA
Subjt:  MNQMDTSNPSVFVNAELLRMYVGRRVRAVIQVQSEGNGVVYGKSTDDDQMIVKGSPPFLLSKFVEIIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLA

Query:  NGEFKPLFV
        NGEFKPLFV
Subjt:  NGEFKPLFV

XP_022144611.1 replication protein A 14 kDa subunit B [Momordica charantia]2.4e-5090.83Show/hide
Query:  MNQMDTSNPSVFVNAELLRMYVGRRVRAVIQVQSEGNGVVYGKSTDDDQMIVKGSPPFLLSKFVEIIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLA
        +N+MDTSNPSVFVNAELLR+YVGRRVRAVIQVQSEGNGV+YGKSTDD+Q+IVKGSPPF LSKFVE+IGIADTDKSIR DVWTNFGDSFDTSTFNQLCQLA
Subjt:  MNQMDTSNPSVFVNAELLRMYVGRRVRAVIQVQSEGNGVVYGKSTDDDQMIVKGSPPFLLSKFVEIIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLA

Query:  NGEFKPLFV
        NGEFKPLF+
Subjt:  NGEFKPLFV

XP_022935108.1 replication protein A 14 kDa subunit B-like [Cucurbita moschata]2.1e-4993.4Show/hide
Query:  MDTSNPSVFVNAELLRMYVGRRVRAVIQVQSEGNGVVYGKSTDDDQMIVKGSPPFLLSKFVEIIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
        MDTSNPSVFVNAELLR+YVGRRVRAVIQVQSEGNGV+YGKSTDD Q+ VKGSPPF LSKFVE+IGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
Subjt:  MDTSNPSVFVNAELLRMYVGRRVRAVIQVQSEGNGVVYGKSTDDDQMIVKGSPPFLLSKFVEIIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFV
        FKPLFV
Subjt:  FKPLFV

XP_022983164.1 replication protein A 14 kDa subunit B-like [Cucurbita maxima]7.1e-5094.34Show/hide
Query:  MDTSNPSVFVNAELLRMYVGRRVRAVIQVQSEGNGVVYGKSTDDDQMIVKGSPPFLLSKFVEIIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
        MDTSNPSVFVNAELLRMYVGRRVRAVIQVQSEGNGV+YGKSTDD+Q+ VKGSPPF LSKFVE+IGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
Subjt:  MDTSNPSVFVNAELLRMYVGRRVRAVIQVQSEGNGVVYGKSTDDDQMIVKGSPPFLLSKFVEIIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFV
        FKPLFV
Subjt:  FKPLFV

XP_023528146.1 replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo]4.9e-5192.66Show/hide
Query:  MNQMDTSNPSVFVNAELLRMYVGRRVRAVIQVQSEGNGVVYGKSTDDDQMIVKGSPPFLLSKFVEIIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLA
        +NQMDTSNPSVFVNAELLR+YVGRRVRAVIQVQSEGNGV+YGKSTDD+Q+ VKGSPPF LSKFVE+IGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLA
Subjt:  MNQMDTSNPSVFVNAELLRMYVGRRVRAVIQVQSEGNGVVYGKSTDDDQMIVKGSPPFLLSKFVEIIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLA

Query:  NGEFKPLFV
        NGEFKPLFV
Subjt:  NGEFKPLFV

TrEMBL top hitse value%identityAlignment
A0A6J1CTX6 replication protein A 14 kDa subunit B1.2e-5090.83Show/hide
Query:  MNQMDTSNPSVFVNAELLRMYVGRRVRAVIQVQSEGNGVVYGKSTDDDQMIVKGSPPFLLSKFVEIIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLA
        +N+MDTSNPSVFVNAELLR+YVGRRVRAVIQVQSEGNGV+YGKSTDD+Q+IVKGSPPF LSKFVE+IGIADTDKSIR DVWTNFGDSFDTSTFNQLCQLA
Subjt:  MNQMDTSNPSVFVNAELLRMYVGRRVRAVIQVQSEGNGVVYGKSTDDDQMIVKGSPPFLLSKFVEIIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLA

Query:  NGEFKPLFV
        NGEFKPLF+
Subjt:  NGEFKPLFV

A0A6J1F9M2 replication protein A 14 kDa subunit B-like9.9e-5093.4Show/hide
Query:  MDTSNPSVFVNAELLRMYVGRRVRAVIQVQSEGNGVVYGKSTDDDQMIVKGSPPFLLSKFVEIIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
        MDTSNPSVFVNAELLR+YVGRRVRAVIQVQSEGNGV+YGKSTDD Q+ VKGSPPF LSKFVE+IGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
Subjt:  MDTSNPSVFVNAELLRMYVGRRVRAVIQVQSEGNGVVYGKSTDDDQMIVKGSPPFLLSKFVEIIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFV
        FKPLFV
Subjt:  FKPLFV

A0A6J1FQS1 replication protein A 14 kDa subunit B-like4.9e-4990.57Show/hide
Query:  MDTSNPSVFVNAELLRMYVGRRVRAVIQVQSEGNGVVYGKSTDDDQMIVKGSPPFLLSKFVEIIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
        MDTSNPSVFVNAELLR+YVGRRVRAVIQVQSEGNGV+YGKSTD++Q++VKGSPPF LSKFVE+IGIADTDKSIRADVWTNFGDSFDTSTFN+LCQLANGE
Subjt:  MDTSNPSVFVNAELLRMYVGRRVRAVIQVQSEGNGVVYGKSTDDDQMIVKGSPPFLLSKFVEIIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFV
        FKPLF+
Subjt:  FKPLFV

A0A6J1J6J3 replication protein A 14 kDa subunit B-like3.4e-5094.34Show/hide
Query:  MDTSNPSVFVNAELLRMYVGRRVRAVIQVQSEGNGVVYGKSTDDDQMIVKGSPPFLLSKFVEIIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
        MDTSNPSVFVNAELLRMYVGRRVRAVIQVQSEGNGV+YGKSTDD+Q+ VKGSPPF LSKFVE+IGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
Subjt:  MDTSNPSVFVNAELLRMYVGRRVRAVIQVQSEGNGVVYGKSTDDDQMIVKGSPPFLLSKFVEIIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFV
        FKPLFV
Subjt:  FKPLFV

A0A6J1L034 replication protein A 14 kDa subunit B-like4.9e-4990.57Show/hide
Query:  MDTSNPSVFVNAELLRMYVGRRVRAVIQVQSEGNGVVYGKSTDDDQMIVKGSPPFLLSKFVEIIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
        MDTSNPSVFVNAELLR+YVGRRVRAVIQVQSEGNGV+YGKSTD++Q++VKGSPPF LSKFVE+IGIADTDKSIRADVWTNFGDSFDTSTFN+LCQLANGE
Subjt:  MDTSNPSVFVNAELLRMYVGRRVRAVIQVQSEGNGVVYGKSTDDDQMIVKGSPPFLLSKFVEIIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFV
        FKPLF+
Subjt:  FKPLFV

SwissProt top hitse value%identityAlignment
Q6NLG7 Replication protein A 14 kDa subunit B2.1e-3362.26Show/hide
Query:  MDTSNPSVFVNAELLRMYVGRRVRAVIQVQSEGNGVVYGKSTDDDQMIVKGSPPFLLSKFVEIIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
        MDTS+P+ FVN  LLR Y+G++VRAVIQV     G V GKSTDD Q++VKGSP   L+ ++E+IGIA+TD +IRA+VWTNFGDSFD   +N+LC+LANGE
Subjt:  MDTSNPSVFVNAELLRMYVGRRVRAVIQVQSEGNGVVYGKSTDDDQMIVKGSPPFLLSKFVEIIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFV
        F+ LF+
Subjt:  FKPLFV

Q9LXK1 Replication protein A 14 kDa subunit A4.5e-3158.88Show/hide
Query:  MDTSNPSVFVNAELLRMYVGRRVRAVIQVQSEGNGVVYGKSTDDDQMIVKG-SPPFLLSKFVEIIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANG
        MDTS+PS FVN  LLR ++G++VR VIQV     G V GKSTDD Q++V+G SPP  L+ ++E+IGIA++D +IRA+ WTNFG++FDT  +N+LC+LANG
Subjt:  MDTSNPSVFVNAELLRMYVGRRVRAVIQVQSEGNGVVYGKSTDDDQMIVKG-SPPFLLSKFVEIIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANG

Query:  EFKPLFV
        EFK LF+
Subjt:  EFKPLFV

Q9SDK9 Replication protein A 14 kDa subunit1.0e-2753.77Show/hide
Query:  MDTSNPSVFVNAELLRMYVGRRVRAVIQVQSEGNGVVYGKSTDDDQMIVKGSPPFLLSKFVEIIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
        MDTS P+ FVN E+L+M+VGRRVR V+Q Q E  G++ G+STD  Q+ +KG+    +S +VEIIGIA+ +++IRA+V T+FG++FD + FN LC+LANG+
Subjt:  MDTSNPSVFVNAELLRMYVGRRVRAVIQVQSEGNGVVYGKSTDDDQMIVKGSPPFLLSKFVEIIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFV
         K LF+
Subjt:  FKPLFV

Arabidopsis top hitse value%identityAlignment
AT3G52630.1 Nucleic acid-binding, OB-fold-like protein3.2e-3258.88Show/hide
Query:  MDTSNPSVFVNAELLRMYVGRRVRAVIQVQSEGNGVVYGKSTDDDQMIVKG-SPPFLLSKFVEIIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANG
        MDTS+PS FVN  LLR ++G++VR VIQV     G V GKSTDD Q++V+G SPP  L+ ++E+IGIA++D +IRA+ WTNFG++FDT  +N+LC+LANG
Subjt:  MDTSNPSVFVNAELLRMYVGRRVRAVIQVQSEGNGVVYGKSTDDDQMIVKG-SPPFLLSKFVEIIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANG

Query:  EFKPLFV
        EFK LF+
Subjt:  EFKPLFV

AT3G52630.2 Nucleic acid-binding, OB-fold-like protein3.2e-3258.88Show/hide
Query:  MDTSNPSVFVNAELLRMYVGRRVRAVIQVQSEGNGVVYGKSTDDDQMIVKG-SPPFLLSKFVEIIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANG
        MDTS+PS FVN  LLR ++G++VR VIQV     G V GKSTDD Q++V+G SPP  L+ ++E+IGIA++D +IRA+ WTNFG++FDT  +N+LC+LANG
Subjt:  MDTSNPSVFVNAELLRMYVGRRVRAVIQVQSEGNGVVYGKSTDDDQMIVKG-SPPFLLSKFVEIIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANG

Query:  EFKPLFV
        EFK LF+
Subjt:  EFKPLFV

AT4G18590.1 Nucleic acid-binding, OB-fold-like protein1.5e-3462.26Show/hide
Query:  MDTSNPSVFVNAELLRMYVGRRVRAVIQVQSEGNGVVYGKSTDDDQMIVKGSPPFLLSKFVEIIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE
        MDTS+P+ FVN  LLR Y+G++VRAVIQV     G V GKSTDD Q++VKGSP   L+ ++E+IGIA+TD +IRA+VWTNFGDSFD   +N+LC+LANGE
Subjt:  MDTSNPSVFVNAELLRMYVGRRVRAVIQVQSEGNGVVYGKSTDDDQMIVKGSPPFLLSKFVEIIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGE

Query:  FKPLFV
        F+ LF+
Subjt:  FKPLFV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCAGATGGATACATCAAATCCTTCAGTTTTTGTCAATGCTGAGCTCTTACGCATGTATGTTGGAAGAAGAGTTAGGGCAGTGATTCAGGTGCAGTCTGAAGGCAA
TGGAGTCGTGTACGGTAAATCGACAGATGACGACCAGATGATTGTGAAAGGCTCTCCCCCCTTTTTACTTTCGAAGTTCGTCGAGATCATTGGAATTGCTGATACCGACA
AATCCATACGAGCTGATGTATGGACCAATTTCGGCGACTCATTCGATACATCTACCTTTAATCAACTATGTCAGCTTGCTAATGGGGAGTTTAAACCATTGTTTGTCTGA
mRNA sequenceShow/hide mRNA sequence
GAAACTTCAATTTTGCCGCTTACTACAACCCGCGGTCTATTTCATTTTAGGGATTCGATTTCCAGTGCCGACGAACTCTCCAATCGATGAATCAGATGGATACATCAAAT
CCTTCAGTTTTTGTCAATGCTGAGCTCTTACGCATGTATGTTGGAAGAAGAGTTAGGGCAGTGATTCAGGTGCAGTCTGAAGGCAATGGAGTCGTGTACGGTAAATCGAC
AGATGACGACCAGATGATTGTGAAAGGCTCTCCCCCCTTTTTACTTTCGAAGTTCGTCGAGATCATTGGAATTGCTGATACCGACAAATCCATACGAGCTGATGTATGGA
CCAATTTCGGCGACTCATTCGATACATCTACCTTTAATCAACTATGTCAGCTTGCTAATGGGGAGTTTAAACCATTGTTTGTCTGATATTCAAGCTAGACACTCTTTGAC
AAGAAAGCTCCTATCTTCTGAAGCTTTCAAGATTTATCGTTCGAATGGTATAAAACTTTTCAGGTAATGGATATATAAAAGTTGAGTATGCAATGTATGCTTGTGTTGTA
ATATTTAGAATGAACATCGCTTCAAAGTATTCATAGAAAACCTATTTTAATCAATTTTGTTCATAGTGTTTTGGATGAGAATAAACTTCTGAAATGCTATTCTATTTCCT
CACCGCAGTTTATACCAACCCATAAGTTAAAACAGTATAATCTGTAGAAGCTTTTCCTTTCTGTTTTATTGAATATATTGAACTGGGTCGAATTCTGC
Protein sequenceShow/hide protein sequence
MNQMDTSNPSVFVNAELLRMYVGRRVRAVIQVQSEGNGVVYGKSTDDDQMIVKGSPPFLLSKFVEIIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV