CuGenDBv2

Gene ID	Sed0021146
Organism	Sechium edule (Chayote v1)
Description	upstream activation factor subunit UAF30-like
Genome location	LG01:748060..751624
RNA-Seq Expression	Sed0021146
Synteny	Sed0021146
Gene Ontology terms	GO:0005634 - nucleus (cellular component)
InterPro domains	IPR003121 - SWIB/MDM2 domain IPR019835 - SWIB domain IPR036885 - SWIB/MDM2 domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

TYK13709.1 upstream activation factor subunit UAF30-like [Cucumis melo var. makuwa]

2.3e-23

72.22

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Query:  KLGEEVKKRGGGDPSNRRNILCDEPLKALFSANSIDMFQMNKALSKHIWPLESNDLIPVKSNQKEKKQKEQQLKEKPQK---KQGREEAS
        +L   +++    DPSNRRNILCDEPLKALF  NSI+MFQMNKALSKHIWPLESND+IP KS+QKEK+QKE+Q KEKPQK   KQG+EE S
Subjt:  KLGEEVKKRGGGDPSNRRNILCDEPLKALFSANSIDMFQMNKALSKHIWPLESNDLIPVKSNQKEKKQKEQQLKEKPQK---KQGREEAS

XP_004148436.1 upstream activation factor subunit UAF30 [Cucumis sativus]

4.0e-23

72.22

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Query:  KLGEEVKKRGGGDPSNRRNILCDEPLKALFSANSIDMFQMNKALSKHIWPLESNDLIPVKSNQKEKKQKEQQLKEKPQK---KQGREEAS
        +L   +++    DPSNRRNILCDEPLKALF  NSI+MFQMNKALSKHIWPLESND+IP KS+QKEK QKE+Q KEKPQK   KQG+EE S
Subjt:  KLGEEVKKRGGGDPSNRRNILCDEPLKALFSANSIDMFQMNKALSKHIWPLESNDLIPVKSNQKEKKQKEQQLKEKPQK---KQGREEAS

XP_008457882.1 PREDICTED: upstream activation factor subunit UAF30-like [Cucumis melo]

2.3e-23

72.22

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Query:  KLGEEVKKRGGGDPSNRRNILCDEPLKALFSANSIDMFQMNKALSKHIWPLESNDLIPVKSNQKEKKQKEQQLKEKPQK---KQGREEAS
        +L   +++    DPSNRRNILCDEPLKALF  NSI+MFQMNKALSKHIWPLESND+IP KS+QKEK+QKE+Q KEKPQK   KQG+EE S
Subjt:  KLGEEVKKRGGGDPSNRRNILCDEPLKALFSANSIDMFQMNKALSKHIWPLESNDLIPVKSNQKEKKQKEQQLKEKPQK---KQGREEAS

XP_038901460.1 upstream activation factor subunit spp27-like isoform X1 [Benincasa hispida]

9.8e-22

52.55

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Query:  RGACSPNKLGEEVKKRGGG----------------------------------------DPSNRRNILCDEPLKALFSANSIDMFQMNKALSKHIWPLES
        +G    NKL +E KKRGGG                                        DPSNRRNILCD+ LKALF  NSI+MFQMNKALSKHIWPLES
Subjt:  RGACSPNKLGEEVKKRGGG----------------------------------------DPSNRRNILCDEPLKALFSANSIDMFQMNKALSKHIWPLES

Query:  NDLIPVKSNQKEKKQKEQQLKEKPQK---KQGREEAS
        ND+IP  S+QKEK+QKE+Q KEKPQK   KQG+EE S
Subjt:  NDLIPVKSNQKEKKQKEQQLKEKPQK---KQGREEAS

XP_038901461.1 protein TRI1-like isoform X2 [Benincasa hispida]

9.8e-22

52.55

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Query:  RGACSPNKLGEEVKKRGGG----------------------------------------DPSNRRNILCDEPLKALFSANSIDMFQMNKALSKHIWPLES
        +G    NKL +E KKRGGG                                        DPSNRRNILCD+ LKALF  NSI+MFQMNKALSKHIWPLES
Subjt:  RGACSPNKLGEEVKKRGGG----------------------------------------DPSNRRNILCDEPLKALFSANSIDMFQMNKALSKHIWPLES

Query:  NDLIPVKSNQKEKKQKEQQLKEKPQK---KQGREEAS
        ND+IP  S+QKEK+QKE+Q KEKPQK   KQG+EE S
Subjt:  NDLIPVKSNQKEKKQKEQQLKEKPQK---KQGREEAS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LJW7 Uncharacterized protein

1.9e-23

72.22

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Query:  KLGEEVKKRGGGDPSNRRNILCDEPLKALFSANSIDMFQMNKALSKHIWPLESNDLIPVKSNQKEKKQKEQQLKEKPQK---KQGREEAS
        +L   +++    DPSNRRNILCDEPLKALF  NSI+MFQMNKALSKHIWPLESND+IP KS+QKEK QKE+Q KEKPQK   KQG+EE S
Subjt:  KLGEEVKKRGGGDPSNRRNILCDEPLKALFSANSIDMFQMNKALSKHIWPLESNDLIPVKSNQKEKKQKEQQLKEKPQK---KQGREEAS

A0A1S3C766 upstream activation factor subunit UAF30-like

1.1e-23

72.22

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Query:  KLGEEVKKRGGGDPSNRRNILCDEPLKALFSANSIDMFQMNKALSKHIWPLESNDLIPVKSNQKEKKQKEQQLKEKPQK---KQGREEAS
        +L   +++    DPSNRRNILCDEPLKALF  NSI+MFQMNKALSKHIWPLESND+IP KS+QKEK+QKE+Q KEKPQK   KQG+EE S
Subjt:  KLGEEVKKRGGGDPSNRRNILCDEPLKALFSANSIDMFQMNKALSKHIWPLESNDLIPVKSNQKEKKQKEQQLKEKPQK---KQGREEAS

A0A5D3CU37 Upstream activation factor subunit UAF30-like

1.1e-23

72.22

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Query:  KLGEEVKKRGGGDPSNRRNILCDEPLKALFSANSIDMFQMNKALSKHIWPLESNDLIPVKSNQKEKKQKEQQLKEKPQK---KQGREEAS
        +L   +++    DPSNRRNILCDEPLKALF  NSI+MFQMNKALSKHIWPLESND+IP KS+QKEK+QKE+Q KEKPQK   KQG+EE S
Subjt:  KLGEEVKKRGGGDPSNRRNILCDEPLKALFSANSIDMFQMNKALSKHIWPLESNDLIPVKSNQKEKKQKEQQLKEKPQK---KQGREEAS

A0A6J1G606 upstream activation factor subunit UAF30-like isoform X1

6.2e-22

49.29

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Query:  SFESETLRGACSPNKLGEEVKKRGGG---------------------------------------DPSNRRNILCDEPLKALFSANSIDMFQMNKALSKH
        ++  +  +     N+LG+EVKKRGGG                                       DPSNRRNILCDEP KALF  NSIDMFQMNKALSKH
Subjt:  SFESETLRGACSPNKLGEEVKKRGGG---------------------------------------DPSNRRNILCDEPLKALFSANSIDMFQMNKALSKH

Query:  IWPLESNDLIPVKSNQKEKKQKEQQLKEKPQKKQGREEAS
        IWPLESND+ P KS+QKEK+QKE+  K+K ++KQG+EE S
Subjt:  IWPLESNDLIPVKSNQKEKKQKEQQLKEKPQKKQGREEAS

A0A6J1L2C3 upstream activation factor subunit UAF30-like isoform X1

4.7e-22

48.25

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Query:  SFESETLRGACSPNKLGEEVKKRGGG---------------------------------------DPSNRRNILCDEPLKALFSANSIDMFQMNKALSKH
        +++ +  +     N++G+EVKKRGGG                                       DPSNRRNILCDEPLKALF  NSI+MFQMNKALSKH
Subjt:  SFESETLRGACSPNKLGEEVKKRGGG---------------------------------------DPSNRRNILCDEPLKALFSANSIDMFQMNKALSKH

Query:  IWPLESNDLIPVKSNQKEKKQKEQQLKEKPQKKQGREEASCGN
        IWPLESND+ P KS+QKEK+QKE+  K+K ++KQG+EE S G+
Subjt:  IWPLESNDLIPVKSNQKEKKQKEQQLKEKPQKKQGREEASCGN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G49520.1 SWIB complex BAF60b domain-containing protein

1.2e-09

39.53

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Query:  LGEEVKKRGGGDPSNRRNILCDEPLKALFSANSIDMFQMNKALSKHIWPLESNDLIPVKSNQKEKKQKEQQLKEKPQKKQGREEAS
        L + +K+    DPS++R I+CDE L++LF   SI+MFQMNK L+KHIWPL   D     ++ ++ KQK +   ++   +   E+A+
Subjt:  LGEEVKKRGGGDPSNRRNILCDEPLKALFSANSIDMFQMNKALSKHIWPLESNDLIPVKSNQKEKKQKEQQLKEKPQKKQGREEAS

AT3G19080.1 SWIB complex BAF60b domain-containing protein

7.0e-10

43.82

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Query:  LGEEVKKRGGGDPSNRRNILCDEPLKALFSANSIDMFQMNKALSKHIWPLESN--DLIPVKS--NQKEKKQ-----KEQQLKEKPQKKQ
        L + +K+    DP+++R+I+CDE  ++LF   SI+MFQMNK L+KHIWPLE N  + +  KS  N K+K +     +E   K+K QKK+
Subjt:  LGEEVKKRGGGDPSNRRNILCDEPLKALFSANSIDMFQMNKALSKHIWPLESN--DLIPVKS--NQKEKKQ-----KEQQLKEKPQKKQ

AT4G22360.1 SWIB complex BAF60b domain-containing protein

8.6e-08

42.42

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Query:  VKKRGGGDPSNRRNILCDEPLKALFSANSIDMFQMNKALSKHIWPLESNDLIPVKSNQKEKKQKEQ
        ++K    DPSN+R I+CD+ L+ +F  +  DMF+MNK L+KHI PL+     P K + + KK K +
Subjt:  VKKRGGGDPSNRRNILCDEPLKALFSANSIDMFQMNKALSKHIWPLESNDLIPVKSNQKEKKQKEQ

Sequences

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CDS sequence

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ATGTATTTATTGGAAACAAGGGTAACCACGCTCGTCCCTAGGCTAGGTATCGAAAATATCGAAAGAGTAATGTCACAGGTAAGTTTTGAATCTGAGACTTTGAGGGGAGC
ATGCAGTCCTAACAAGCTTGGTGAAGAGGTGAAGAAAAGAGGAGGGGGTGACCCCAGTAACAGGAGAAATATTCTCTGTGATGAACCATTAAAAGCACTATTTAGTGCGA
ATTCCATCGACATGTTCCAAATGAATAAAGCTCTATCGAAGCATATCTGGCCGTTGGAATCAAATGACCTTATTCCAGTCAAGTCAAATCAGAAGGAAAAGAAGCAAAAA
GAACAACAGCTAAAGGAGAAGCCACAGAAGAAGCAAGGAAGAGAAGAAGCTTCTTGCGGCAACTAA

mRNA sequence

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Protein sequence

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MYLLETRVTTLVPRLGIENIERVMSQVSFESETLRGACSPNKLGEEVKKRGGGDPSNRRNILCDEPLKALFSANSIDMFQMNKALSKHIWPLESNDLIPVKSNQKEKKQK
EQQLKEKPQKKQGREEASCGN

Sed0021146 (gene) of Chayote v1 genome