CuGenDBv2

Gene ID	Sed0021147
Organism	Sechium edule (Chayote v1)
Description	Transcription factor IIIB subunit
Genome location	LG01:69485810..69489290
RNA-Seq Expression	Sed0021147
Synteny	Sed0021147
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004148363.1 uncharacterized protein LOC101210706 [Cucumis sativus]

4.5e-53

77.63

Show/hide

Query:  MDKIFEFGRRALSYVRIVSGYEERRIRSFRLELEKRLKQAEERKAAIRKIPEQAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEADALMKIQLE
        MDK+ +FGRRAL YVR++SGYEERRIRS R +L+KRLKQAEERK+AIRK+PEQ ILGEVRRMVEEMQ LN+KLEETE+AIEEYFKPIDKEA+ LMKIQLE
Subjt:  MDKIFEFGRRALSYVRIVSGYEERRIRSFRLELEKRLKQAEERKAAIRKIPEQAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEADALMKIQLE

Query:  AEEGTMKNMVKVMQQQALFEKAEAGKVSS-ILQTDENRHSQNIASDTTPQNT
         EE  M++MVKVMQQQAL EKAEAGKV+S  LQT++N+ +QN+ASDTTPQ T
Subjt:  AEEGTMKNMVKVMQQQALFEKAEAGKVSS-ILQTDENRHSQNIASDTTPQNT

XP_008465889.1 PREDICTED: uncharacterized protein LOC103503473 [Cucumis melo]

1.5e-56

80.79

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Query:  MDKIFEFGRRALSYVRIVSGYEERRIRSFRLELEKRLKQAEERKAAIRKIPEQAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEADALMKIQLE
        MDK+ +FGRRAL Y+R++SGYEERRIRSFRL L+KRLKQAEERKAAIRK+PEQAILGEVRRMVEEMQTLN+ LEETESAIEEYFKPIDKEA+ALMKIQLE
Subjt:  MDKIFEFGRRALSYVRIVSGYEERRIRSFRLELEKRLKQAEERKAAIRKIPEQAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEADALMKIQLE

Query:  AEEGTMKNMVKVMQQQALFEKAEAGKVSSILQTDENRHSQNIASDTTPQNT
         EE +MK+MVKVMQQQALF++AEAGKV++ LQT++N+ +QN+ASDTTPQ T
Subjt:  AEEGTMKNMVKVMQQQALFEKAEAGKVSSILQTDENRHSQNIASDTTPQNT

XP_022131261.1 uncharacterized protein LOC111004517 [Momordica charantia]

1.4e-59

85.06

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Query:  MDKIFEFGRRALSYVRIVSGYEERRIRSFRLELEKRLKQAEERKAAIRKIPEQAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEADALMKIQLE
        MDK+ EFGRRAL YVR++SGYEERRIRSFRLELEKRLKQAEE+KAA+RKIPEQAILGEVRRMVEEMQTLN+KLEETESAIEEYFKPIDKEA+ALMK+QLE
Subjt:  MDKIFEFGRRALSYVRIVSGYEERRIRSFRLELEKRLKQAEERKAAIRKIPEQAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEADALMKIQLE

Query:  AEEGTMKNMVKVMQQQALFEKAEAGKV-SSILQTDENRHSQNIASDTTPQNTQL
         EE  MK+MVKVMQQQALFEKAEAGKV +S LQTD+N+H+QN+ASD TPQ TQL
Subjt:  AEEGTMKNMVKVMQQQALFEKAEAGKV-SSILQTDENRHSQNIASDTTPQNTQL

XP_023532534.1 uncharacterized protein LOC111794666 [Cucurbita pepo subsp. pepo]

2.9e-52

81.56

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Query:  MDKIFEFGRRALSYVRIVSGYEERRIRSFRLELEKRLKQAEERKAAIRKIPEQAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEADALMKIQLE
        MD++ EFGRRAL YV+++SGYEERRIRSFRLELEKRLK+AEERKAAIR+IPEQAILGEVRRMVEEMQTLN+KLEETESAIEEYFKPIDKE +ALM++QLE
Subjt:  MDKIFEFGRRALSYVRIVSGYEERRIRSFRLELEKRLKQAEERKAAIRKIPEQAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEADALMKIQLE

Query:  AEEGTMKNMVKVMQQQALFEKAEAGKVSSILQTDENRHSQN
         EE TMKNMVKVMQQQAL EK EA KV S LQTD+N+ +Q+
Subjt:  AEEGTMKNMVKVMQQQALFEKAEAGKVSSILQTDENRHSQN

XP_038886906.1 uncharacterized protein LOC120077104 [Benincasa hispida]

2.0e-61

88.08

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Query:  MDKIFEFGRRALSYVRIVSGYEERRIRSFRLELEKRLKQAEERKAAIRKIPEQAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEADALMKIQLE
        MDK+ EFGRRAL YVR++SGYEERRIRSFRLELEKRLKQAEERKAAIRKIPEQAILGEVRRMVEEMQTLN+KLEETESAIEEYFKPIDKEA+ALMKIQLE
Subjt:  MDKIFEFGRRALSYVRIVSGYEERRIRSFRLELEKRLKQAEERKAAIRKIPEQAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEADALMKIQLE

Query:  AEEGTMKNMVKVMQQQALFEKAEAGKVSSILQTDENRHSQNIASDTTPQNT
         EE TMK+MVKVMQQQALFEKAEAGKV+S LQTD+N+ +QN+ASDTTPQ T
Subjt:  AEEGTMKNMVKVMQQQALFEKAEAGKVSSILQTDENRHSQNIASDTTPQNT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LKE0 Uncharacterized protein

2.2e-53

77.63

Show/hide

Query:  MDKIFEFGRRALSYVRIVSGYEERRIRSFRLELEKRLKQAEERKAAIRKIPEQAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEADALMKIQLE
        MDK+ +FGRRAL YVR++SGYEERRIRS R +L+KRLKQAEERK+AIRK+PEQ ILGEVRRMVEEMQ LN+KLEETE+AIEEYFKPIDKEA+ LMKIQLE
Subjt:  MDKIFEFGRRALSYVRIVSGYEERRIRSFRLELEKRLKQAEERKAAIRKIPEQAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEADALMKIQLE

Query:  AEEGTMKNMVKVMQQQALFEKAEAGKVSS-ILQTDENRHSQNIASDTTPQNT
         EE  M++MVKVMQQQAL EKAEAGKV+S  LQT++N+ +QN+ASDTTPQ T
Subjt:  AEEGTMKNMVKVMQQQALFEKAEAGKVSS-ILQTDENRHSQNIASDTTPQNT

A0A1S3CPZ1 uncharacterized protein LOC103503473

7.2e-57

80.79

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Query:  MDKIFEFGRRALSYVRIVSGYEERRIRSFRLELEKRLKQAEERKAAIRKIPEQAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEADALMKIQLE
        MDK+ +FGRRAL Y+R++SGYEERRIRSFRL L+KRLKQAEERKAAIRK+PEQAILGEVRRMVEEMQTLN+ LEETESAIEEYFKPIDKEA+ALMKIQLE
Subjt:  MDKIFEFGRRALSYVRIVSGYEERRIRSFRLELEKRLKQAEERKAAIRKIPEQAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEADALMKIQLE

Query:  AEEGTMKNMVKVMQQQALFEKAEAGKVSSILQTDENRHSQNIASDTTPQNT
         EE +MK+MVKVMQQQALF++AEAGKV++ LQT++N+ +QN+ASDTTPQ T
Subjt:  AEEGTMKNMVKVMQQQALFEKAEAGKVSSILQTDENRHSQNIASDTTPQNT

A0A6J1BQI2 uncharacterized protein LOC111004517

6.9e-60

85.06

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Query:  MDKIFEFGRRALSYVRIVSGYEERRIRSFRLELEKRLKQAEERKAAIRKIPEQAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEADALMKIQLE
        MDK+ EFGRRAL YVR++SGYEERRIRSFRLELEKRLKQAEE+KAA+RKIPEQAILGEVRRMVEEMQTLN+KLEETESAIEEYFKPIDKEA+ALMK+QLE
Subjt:  MDKIFEFGRRALSYVRIVSGYEERRIRSFRLELEKRLKQAEERKAAIRKIPEQAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEADALMKIQLE

Query:  AEEGTMKNMVKVMQQQALFEKAEAGKV-SSILQTDENRHSQNIASDTTPQNTQL
         EE  MK+MVKVMQQQALFEKAEAGKV +S LQTD+N+H+QN+ASD TPQ TQL
Subjt:  AEEGTMKNMVKVMQQQALFEKAEAGKV-SSILQTDENRHSQNIASDTTPQNTQL

A0A6J1H1D7 uncharacterized protein LOC111459545

9.1e-52

80.85

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Query:  MDKIFEFGRRALSYVRIVSGYEERRIRSFRLELEKRLKQAEERKAAIRKIPEQAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEADALMKIQLE
        MDK+ EFGRRAL YV+++SGYEERRIRS RLELEKRLK+AEERKAAIR+IPEQAILGEVRRMVEEMQTLN+KLEETESAIEEYFKPIDKE +ALM++QLE
Subjt:  MDKIFEFGRRALSYVRIVSGYEERRIRSFRLELEKRLKQAEERKAAIRKIPEQAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEADALMKIQLE

Query:  AEEGTMKNMVKVMQQQALFEKAEAGKVSSILQTDENRHSQN
         EE TMKNMVKV+QQQAL EK EA KV S LQTD+N+ +Q+
Subjt:  AEEGTMKNMVKVMQQQALFEKAEAGKVSSILQTDENRHSQN

A0A6J1K1F5 uncharacterized protein LOC111491540

3.1e-52

81.56

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Query:  MDKIFEFGRRALSYVRIVSGYEERRIRSFRLELEKRLKQAEERKAAIRKIPEQAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEADALMKIQLE
        MDK+ E GRRAL YV+++SGYEERRIRSFRLELEKRLK+AEERKAAIRKIPEQAILGEVRRMVEEMQTLN+KLEETESAIEEYFKPIDKE + LM++QLE
Subjt:  MDKIFEFGRRALSYVRIVSGYEERRIRSFRLELEKRLKQAEERKAAIRKIPEQAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEADALMKIQLE

Query:  AEEGTMKNMVKVMQQQALFEKAEAGKVSSILQTDENRHSQN
         EE TMKNMVKVMQQQAL EK EA KV S LQTD+N+ +Q+
Subjt:  AEEGTMKNMVKVMQQQALFEKAEAGKVSSILQTDENRHSQN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G17010.1 unknown protein

2.0e-35

57.81

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Query:  MDKIFEFGRRALSYVRIVSGYEERRIRSFRLELEKRLKQAEERKAAIRKIPEQAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEADALMKIQLE
        M+K+ E+GR+A+ YVR++SGYEERRIRS+RL+LEKR++QA +RK  I ++PEQ +L EVRRMVEEMQ LN+++E TE+ IE+YFKPIDK A  +M+IQLE
Subjt:  MDKIFEFGRRALSYVRIVSGYEERRIRSFRLELEKRLKQAEERKAAIRKIPEQAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEADALMKIQLE

Query:  AEEGTMKNMVKVMQQQALFEKAEAGKVS
         E+ TM  M+   QQ+A+ +  EA K++
Subjt:  AEEGTMKNMVKVMQQQALFEKAEAGKVS

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGACAAGATTTTCGAGTTTGGACGAAGAGCCCTCAGCTACGTTAGGATCGTCTCCGGCTACGAAGAGCGGCGGATTCGATCGTTTAGGTTGGAGCTCGAAAAGCGTCT
CAAGCAGGCCGAGGAAAGAAAAGCTGCCATAAGAAAGATACCAGAACAGGCTATCTTAGGAGAAGTTCGTCGTATGGTTGAGGAGATGCAAACTCTAAATAGAAAGTTAG
AGGAAACAGAGTCTGCCATTGAAGAGTACTTCAAGCCAATTGACAAAGAAGCAGATGCATTAATGAAAATTCAACTTGAAGCAGAAGAGGGAACTATGAAGAACATGGTT
AAAGTCATGCAGCAACAGGCTTTGTTTGAAAAAGCTGAGGCAGGTAAAGTTTCTAGTATCCTTCAAACCGACGAAAATCGACACAGTCAAAACATTGCATCTGACACAAC
CCCTCAAAACACTCAGTTGAGGGATTTTATGAGAAGTTAG

mRNA sequence

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GAATACATTCATGGCTTCTTATGATCTGTTCGCTGAATGAGAATATAGGGATTTGAATGGACAAGATTTTCGAGTTTGGACGAAGAGCCCTCAGCTACGTTAGGATCGTC
TCCGGCTACGAAGAGCGGCGGATTCGATCGTTTAGGTTGGAGCTCGAAAAGCGTCTCAAGCAGGCCGAGGAAAGAAAAGCTGCCATAAGAAAGATACCAGAACAGGCTAT
CTTAGGAGAAGTTCGTCGTATGGTTGAGGAGATGCAAACTCTAAATAGAAAGTTAGAGGAAACAGAGTCTGCCATTGAAGAGTACTTCAAGCCAATTGACAAAGAAGCAG
ATGCATTAATGAAAATTCAACTTGAAGCAGAAGAGGGAACTATGAAGAACATGGTTAAAGTCATGCAGCAACAGGCTTTGTTTGAAAAAGCTGAGGCAGGTAAAGTTTCT
AGTATCCTTCAAACCGACGAAAATCGACACAGTCAAAACATTGCATCTGACACAACCCCTCAAAACACTCAGTTGAGGGATTTTATGAGAAGTTAGTGATGATTTGATTA
GATTAATAAAGTTAGTTATTATGCAATTTTGGTACCACCAATGTCATAAATACACTTCACTCTATTGTTGATTATAAAGCACCTTAGTTTTATTTGTAGAGGCA

Protein sequence

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MDKIFEFGRRALSYVRIVSGYEERRIRSFRLELEKRLKQAEERKAAIRKIPEQAILGEVRRMVEEMQTLNRKLEETESAIEEYFKPIDKEADALMKIQLEAEEGTMKNMV
KVMQQQALFEKAEAGKVSSILQTDENRHSQNIASDTTPQNTQLRDFMRS

Sed0021147 (gene) of Chayote v1 genome