CuGenDBv2

Gene ID	Sed0021203
Organism	Sechium edule (Chayote v1)
Description	Photosystem II PsbX
Genome location	LG08:7556407..7557140
RNA-Seq Expression	Sed0021203
Synteny	Sed0021203
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0009523 - photosystem II (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR009518 - Photosystem II PsbX

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7023687.1 Mechanosensitive ion channel protein 10, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.3e-39

81.75

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Query:  MASTSALSMALPFTYAATNRLSKHAFFNPLPSSSSSSRSRNAIAAAPSSNGRLVLVRSSLKEKAAAGLTAAALTAAMVIPEVAEAAGSGVTPSLKNFLLS
        MASTSA+S+ALP T A   RLS HAFFNPLP +SSSSRSR AIAAAP+SNG LV VRSSLKEKA  GLTAAALTA+MVIPEVAEAAG GV+PSLKNFLLS
Subjt:  MASTSALSMALPFTYAATNRLSKHAFFNPLPSSSSSSRSRNAIAAAPSSNGRLVLVRSSLKEKAAAGLTAAALTAAMVIPEVAEAAGSGVTPSLKNFLLS

Query:  IGAGGAVVFAILGAIIGVSNFDPVKR
        I AGG VV AILGA+IGVSNFDPVKR
Subjt:  IGAGGAVVFAILGAIIGVSNFDPVKR

XP_008450907.1 PREDICTED: uncharacterized protein LOC103492356 [Cucumis melo]

3.6e-37

77.17

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Query:  MASTSALSMALPFTYAATNRLSKHAFFNPLPSSSSSSRSRNAIAAAPSSNGRLVLVRSSLKEKAAAGLTAAALTAAMVIPEVAEAAGSGVTPSLKNFLLS
        MASTSA+SMALPFT+A    LS  AFFNPLP    S +SR  IAAAP SNGR+V VRSSLKEKA AG+TAAAL A+MVIPEVAEAAGSGV+PSLKNFLLS
Subjt:  MASTSALSMALPFTYAATNRLSKHAFFNPLPSSSSSSRSRNAIAAAPSSNGRLVLVRSSLKEKAAAGLTAAALTAAMVIPEVAEAAGSGVTPSLKNFLLS

Query:  IGAGGAVVFAILGAIIGVSNFDPVKRS
        I AGGAVV AI GA+IGV+NFDPVKRS
Subjt:  IGAGGAVVFAILGAIIGVSNFDPVKRS

XP_022960741.1 uncharacterized protein LOC111461452 [Cucurbita moschata]

2.9e-39

80.95

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Query:  MASTSALSMALPFTYAATNRLSKHAFFNPLPSSSSSSRSRNAIAAAPSSNGRLVLVRSSLKEKAAAGLTAAALTAAMVIPEVAEAAGSGVTPSLKNFLLS
        MASTS +S+ALP T A   RLS HAFFNPLP +SSSSRSR AIAAAP+S+GRLV VRSSLKEKA  GLTAAALTA+MVIPEVAEAAG GV+PSLKNFLLS
Subjt:  MASTSALSMALPFTYAATNRLSKHAFFNPLPSSSSSSRSRNAIAAAPSSNGRLVLVRSSLKEKAAAGLTAAALTAAMVIPEVAEAAGSGVTPSLKNFLLS

Query:  IGAGGAVVFAILGAIIGVSNFDPVKR
        I AGG VV AILGA+IGVSNFDPVKR
Subjt:  IGAGGAVVFAILGAIIGVSNFDPVKR

XP_022987287.1 uncharacterized protein LOC111484883 [Cucurbita maxima]

1.2e-37

78.57

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Query:  MASTSALSMALPFTYAATNRLSKHAFFNPLPSSSSSSRSRNAIAAAPSSNGRLVLVRSSLKEKAAAGLTAAALTAAMVIPEVAEAAGSGVTPSLKNFLLS
        MASTS +S+ALP T A   RLS HAFFNPLP +S SSR R AIAAAP+SNGRLV VRSSLKEKA  G++AAALTA+MVIPEVAEAAG GV+PSLKNFLLS
Subjt:  MASTSALSMALPFTYAATNRLSKHAFFNPLPSSSSSSRSRNAIAAAPSSNGRLVLVRSSLKEKAAAGLTAAALTAAMVIPEVAEAAGSGVTPSLKNFLLS

Query:  IGAGGAVVFAILGAIIGVSNFDPVKR
        I AGG VV AILGA+IGVSNFDPVKR
Subjt:  IGAGGAVVFAILGAIIGVSNFDPVKR

XP_038878912.1 uncharacterized protein LOC120071001 [Benincasa hispida]

1.1e-38

79.53

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Query:  MASTSALSMALPFTYAATNRLSKHAFFNPLPSSSSSSRSRNAIAAAPSSNGRLVLVRSSLKEKAAAGLTAAALTAAMVIPEVAEAAGSGVTPSLKNFLLS
        MASTSALSMALP TYA    LS  AFFNPLP    S +SR AIAAAP SNGR+V VRSSLKEKA AG+TAAALTA+MVIPEVAEAAG GV+PSLKNFLLS
Subjt:  MASTSALSMALPFTYAATNRLSKHAFFNPLPSSSSSSRSRNAIAAAPSSNGRLVLVRSSLKEKAAAGLTAAALTAAMVIPEVAEAAGSGVTPSLKNFLLS

Query:  IGAGGAVVFAILGAIIGVSNFDPVKRS
        I AGGAVV AILGA+IGV+NFDPVKRS
Subjt:  IGAGGAVVFAILGAIIGVSNFDPVKRS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LWL3 Uncharacterized protein

8.6e-37

75.59

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Query:  MASTSALSMALPFTYAATNRLSKHAFFNPLPSSSSSSRSRNAIAAAPSSNGRLVLVRSSLKEKAAAGLTAAALTAAMVIPEVAEAAGSGVTPSLKNFLLS
        MASTSALSMALPFT+A    LS  AFFNPLP    S +SR  IA AP SNGR++ VRSS KEKA AG++AAALTA+MVIPEVAEAAGSGV+PSLKNFLLS
Subjt:  MASTSALSMALPFTYAATNRLSKHAFFNPLPSSSSSSRSRNAIAAAPSSNGRLVLVRSSLKEKAAAGLTAAALTAAMVIPEVAEAAGSGVTPSLKNFLLS

Query:  IGAGGAVVFAILGAIIGVSNFDPVKRS
        I AGG VV AILGA+IGV+NFDPVKRS
Subjt:  IGAGGAVVFAILGAIIGVSNFDPVKRS

A0A1S3BRD2 uncharacterized protein LOC103492356

1.7e-37

77.17

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Query:  MASTSALSMALPFTYAATNRLSKHAFFNPLPSSSSSSRSRNAIAAAPSSNGRLVLVRSSLKEKAAAGLTAAALTAAMVIPEVAEAAGSGVTPSLKNFLLS
        MASTSA+SMALPFT+A    LS  AFFNPLP    S +SR  IAAAP SNGR+V VRSSLKEKA AG+TAAAL A+MVIPEVAEAAGSGV+PSLKNFLLS
Subjt:  MASTSALSMALPFTYAATNRLSKHAFFNPLPSSSSSSRSRNAIAAAPSSNGRLVLVRSSLKEKAAAGLTAAALTAAMVIPEVAEAAGSGVTPSLKNFLLS

Query:  IGAGGAVVFAILGAIIGVSNFDPVKRS
        I AGGAVV AI GA+IGV+NFDPVKRS
Subjt:  IGAGGAVVFAILGAIIGVSNFDPVKRS

A0A6J1H8G2 uncharacterized protein LOC111461452

1.4e-39

80.95

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Query:  MASTSALSMALPFTYAATNRLSKHAFFNPLPSSSSSSRSRNAIAAAPSSNGRLVLVRSSLKEKAAAGLTAAALTAAMVIPEVAEAAGSGVTPSLKNFLLS
        MASTS +S+ALP T A   RLS HAFFNPLP +SSSSRSR AIAAAP+S+GRLV VRSSLKEKA  GLTAAALTA+MVIPEVAEAAG GV+PSLKNFLLS
Subjt:  MASTSALSMALPFTYAATNRLSKHAFFNPLPSSSSSSRSRNAIAAAPSSNGRLVLVRSSLKEKAAAGLTAAALTAAMVIPEVAEAAGSGVTPSLKNFLLS

Query:  IGAGGAVVFAILGAIIGVSNFDPVKR
        I AGG VV AILGA+IGVSNFDPVKR
Subjt:  IGAGGAVVFAILGAIIGVSNFDPVKR

A0A6J1HV97 uncharacterized protein LOC111467755

3.1e-34

75.4

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Query:  MASTSALSMALPFTYAATNRLSKHAFFNPLPSSSSSSRSRNAIAAAPSSNGRLVLVRSSLKEKAAAGLTAAALTAAMVIPEVAEAAGSGVTPSLKNFLLS
        MAS  A+SMALP TYA+  RLS  AFFNPLP     SRSR AI AAP    RLV+V SSLKEKA  GLTAAAL+AAMVIPEVAEAAG GV+PSLKNFLLS
Subjt:  MASTSALSMALPFTYAATNRLSKHAFFNPLPSSSSSSRSRNAIAAAPSSNGRLVLVRSSLKEKAAAGLTAAALTAAMVIPEVAEAAGSGVTPSLKNFLLS

Query:  IGAGGAVVFAILGAIIGVSNFDPVKR
        I AGG VV AILGA+IGVSNFDPVKR
Subjt:  IGAGGAVVFAILGAIIGVSNFDPVKR

A0A6J1J9Y5 uncharacterized protein LOC111484883

6.0e-38

78.57

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Query:  MASTSALSMALPFTYAATNRLSKHAFFNPLPSSSSSSRSRNAIAAAPSSNGRLVLVRSSLKEKAAAGLTAAALTAAMVIPEVAEAAGSGVTPSLKNFLLS
        MASTS +S+ALP T A   RLS HAFFNPLP +S SSR R AIAAAP+SNGRLV VRSSLKEKA  G++AAALTA+MVIPEVAEAAG GV+PSLKNFLLS
Subjt:  MASTSALSMALPFTYAATNRLSKHAFFNPLPSSSSSSRSRNAIAAAPSSNGRLVLVRSSLKEKAAAGLTAAALTAAMVIPEVAEAAGSGVTPSLKNFLLS

Query:  IGAGGAVVFAILGAIIGVSNFDPVKR
        I AGG VV AILGA+IGVSNFDPVKR
Subjt:  IGAGGAVVFAILGAIIGVSNFDPVKR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G06520.1 photosystem II subunit X

2.2e-21

48.82

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Query:  MASTSALSMALPFTYAATNRLSKHAFFNPLPSSSSSSRSRNAIAAAPSSNGRLVLVRSSLKEKAAAGLTAAALTAAMVIPEVAEAAGSGVTPSLKNFLLS
        MASTSA+S+  P      N+     F  PLP   S +        A     + + V++   +KA  G++AAALTA+MVIPE+AEAAGSG++PSLKNFLLS
Subjt:  MASTSALSMALPFTYAATNRLSKHAFFNPLPSSSSSSRSRNAIAAAPSSNGRLVLVRSSLKEKAAAGLTAAALTAAMVIPEVAEAAGSGVTPSLKNFLLS

Query:  IGAGGAVVFAILGAIIGVSNFDPVKRS
        I +GG V+  I+G ++GVSNFDPVKR+
Subjt:  IGAGGAVVFAILGAIIGVSNFDPVKRS

Sequences

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CDS sequence

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ATGGCTTCCACATCCGCCCTTTCAATGGCTCTGCCGTTCACCTACGCCGCAACTAACCGCCTCTCCAAACACGCCTTCTTCAATCCATTGCCTTCTTCTTCTTCTTCTTC
TAGATCTCGCAACGCGATCGCCGCCGCTCCGTCCTCCAACGGGCGCCTCGTCCTCGTCCGATCGTCGTTGAAGGAGAAGGCCGCGGCTGGACTGACGGCGGCGGCGCTGA
CGGCGGCGATGGTGATTCCGGAGGTGGCGGAGGCGGCCGGATCGGGAGTTACGCCGTCGTTGAAGAACTTTTTGCTCAGCATTGGCGCCGGTGGAGCTGTGGTGTTCGCC
ATATTGGGAGCCATCATCGGCGTTTCGAACTTCGATCCGGTCAAGCGTAGCTGA

mRNA sequence

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AGAGAAGTTGCCACGTCGGACACAGATGAAGATTTCAAATCCCTAAATCCCCAAATTCCCACAACCCACACAAATTCACAGCAGAAGCTTCTTCCCAATCGCCAATGGCT
TCCACATCCGCCCTTTCAATGGCTCTGCCGTTCACCTACGCCGCAACTAACCGCCTCTCCAAACACGCCTTCTTCAATCCATTGCCTTCTTCTTCTTCTTCTTCTAGATC
TCGCAACGCGATCGCCGCCGCTCCGTCCTCCAACGGGCGCCTCGTCCTCGTCCGATCGTCGTTGAAGGAGAAGGCCGCGGCTGGACTGACGGCGGCGGCGCTGACGGCGG
CGATGGTGATTCCGGAGGTGGCGGAGGCGGCCGGATCGGGAGTTACGCCGTCGTTGAAGAACTTTTTGCTCAGCATTGGCGCCGGTGGAGCTGTGGTGTTCGCCATATTG
GGAGCCATCATCGGCGTTTCGAACTTCGATCCGGTCAAGCGTAGCTGATTGGATTTGTGTTTTGTTTCTTTTTTCTTGTAAGCTGCTGTTTGTTGTAATGTATGAATTGA
TTTTCAGATATTATTTTCTTCCATTACTGTGATGTGATGTGATGCCTTTTTTCGTGCTTTCATTCATCAAACTTAAGCCTTAGGTTGTTTGTTTTGTGATTTTTTCATCG
AGCTGTTATTATAAATGAGCTAGTATATACGTGCTCTTCTAATTGCTCAAATCAATCACTCATTTTTTAGCCCC

Protein sequence

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MASTSALSMALPFTYAATNRLSKHAFFNPLPSSSSSSRSRNAIAAAPSSNGRLVLVRSSLKEKAAAGLTAAALTAAMVIPEVAEAAGSGVTPSLKNFLLSIGAGGAVVFA
ILGAIIGVSNFDPVKRS

Sed0021203 (gene) of Chayote v1 genome