CuGenDBv2

Gene ID	Sed0021210
Organism	Sechium edule (Chayote v1)
Description	60S ribosomal protein L38
Genome location	LG11:28209877..28211686
RNA-Seq Expression	Sed0021210
Synteny	Sed0021210
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0022618 - ribonucleoprotein complex assembly (biological process) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR002675 - Ribosomal protein L38e IPR038464 - Ribosomal protein L38e superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

BBG93615.1 Ribosomal L38e protein family [Prunus dulcis]

1.4e-27

95.65

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLPVQEL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKD VKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGL VQ+L
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLPVQEL

CAA2620548.1 unnamed protein product [Spirodela intermedia]

1.4e-27

95.65

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLPVQEL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKD VKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGL VQE+
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLPVQEL

VVA31613.1 PREDICTED: 60S ribosomal, partial [Prunus dulcis]

1.4e-27

95.65

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLPVQEL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKD VKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGL VQ+L
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLPVQEL

XP_007207316.1 60S ribosomal protein L38 [Prunus persica]

1.4e-27

95.65

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLPVQEL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKD VKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGL VQ+L
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLPVQEL

XP_021673719.1 60S ribosomal protein L38-like [Hevea brasiliensis]

8.2e-28

97.1

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLPVQEL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKD VKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGL VQEL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLPVQEL

TrEMBL top hits

e value

%identity

Alignment

A0A314ZFP9 60S ribosomal protein L38

6.8e-28

95.65

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLPVQEL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKD VKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGL VQ+L
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLPVQEL

A0A5E4FVX4 PREDICTED: 60S ribosomal (Fragment)

6.8e-28

95.65

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLPVQEL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKD VKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGL VQ+L
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLPVQEL

A0A6J5W2Q8 Uncharacterized protein

6.8e-28

95.65

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLPVQEL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKD VKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGL VQ+L
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLPVQEL

A0A7I8IQP0 Hypothetical protein

6.8e-28

95.65

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLPVQEL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKD VKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGL VQE+
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLPVQEL

M5WNY0 Uncharacterized protein

6.8e-28

95.65

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLPVQEL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKD VKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGL VQ+L
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLPVQEL

SwissProt top hits

e value

%identity

Alignment

O22860 60S ribosomal protein L38

2.0e-29

92.75

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLPVQEL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKD VKFKVRCS+YLYTLCVFD EKADKLKQSLPPGL VQ+L
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLPVQEL

P46291 60S ribosomal protein L38

1.1e-27

88.41

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLPVQEL
        MPKQIHEIKDFLLTARRKDAR+VKIK++KD VKFKVRCSKYLYTLCV D EKADKLKQSLPPGL VQ+L
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLPVQEL

P63173 60S ribosomal protein L38

3.3e-24

78.26

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLPVQEL
        MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL V+EL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLPVQEL

Q32PB9 60S ribosomal protein L38

3.3e-24

78.26

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLPVQEL
        MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL V+EL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLPVQEL

Q95V84 60S ribosomal protein L38

2.1e-26

84.06

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLPVQEL
        MPKQIHEIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKADKLKQSLPPGL V+EL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLPVQEL

Arabidopsis top hits

e value

%identity

Alignment

AT2G43460.1 Ribosomal L38e protein family

1.4e-30

92.75

Show/hide

Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLPVQEL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKD VKFKVRCS+YLYTLCVFD EKADKLKQSLPPGL VQ+L
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLPVQEL

AT3G59540.1 Ribosomal L38e protein family

1.4e-30

92.75

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLPVQEL
        MPKQIHEIKDFLLTARRKDARSVKIKRSKD VKFKVRCS+YLYTLCVFD EKADKLKQSLPPGL VQ+L
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLPVQEL

Sequences

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CDS sequence

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ATGCCGAAGCAAATCCATGAGATCAAAGACTTTCTTCTCACTGCAAGAAGGAAGGATGCCCGTTCTGTGAAAATCAAGAGGAGCAAAGATGAAGTCAAGTTTAAGGTTCG
CTGCTCCAAGTACCTTTACACCCTCTGCGTGTTCGACTCCGAGAAGGCCGACAAGTTGAAGCAGTCTCTTCCACCAGGTTTGCCTGTGCAAGAACTTTGA

mRNA sequence

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AAAAAAAGCATTTCTCTGAAACCCTAATTCTAACCCTCTTCTCGTTTTAATCAGTAGACAACGCCGTTCGTATCCGCATCGCTCCTCTGCTTCTCACAACCCTAAAAATG
CCGAAGCAAATCCATGAGATCAAAGACTTTCTTCTCACTGCAAGAAGGAAGGATGCCCGTTCTGTGAAAATCAAGAGGAGCAAAGATGAAGTCAAGTTTAAGGTTCGCTG
CTCCAAGTACCTTTACACCCTCTGCGTGTTCGACTCCGAGAAGGCCGACAAGTTGAAGCAGTCTCTTCCACCAGGTTTGCCTGTGCAAGAACTTTGAAGTAGTGAGCTAT
TTTCTTAGATTGAGATGCAAAAAATCAGGAGTTGAAGGAAGCCTTTGTTATTTCTTTCTTATTGTCAGTGATGTTTGGATGTTTTGGTAGTTCATTTATGCAGGGACTCT
CATTTTTGTCACAATGCATGAGACCGGAGCTTGTTACCTTTTATTGTTTCTTTAATTTTATGAATATTATGAGAGATTTGTTCATCGTTGATCATCATTGCCCCTTTTGC
TCCCTTTTGGTGTTTCTTGGAGTTGGTTTACCAAATAGAGATATTACGTTTGCTTACAACAGAACAATGGAGCATCTTTCAATTGGATGTTCTTTGTGCACTTTGATGAA
AAAAAGTTCATATATGATCTC

Protein sequence

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MPKQIHEIKDFLLTARRKDARSVKIKRSKDEVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLPVQEL

Sed0021210 (gene) of Chayote v1 genome