CuGenDBv2

Gene ID	Sed0021255
Organism	Sechium edule (Chayote v1)
Description	plastid transcriptionally active 6
Genome location	LG05:36399451..36402881
RNA-Seq Expression	Sed0021255
Synteny	Sed0021255
Gene Ontology terms	GO:0000427 - plastid-encoded plastid RNA polymerase complex (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0052214.1 uncharacterized protein E6C27_scaffold207G00250 [Cucumis melo var. makuwa]

1.2e-169

91.18

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Query:  MNSTVFLLSSPSLPPPPTVHRIRSPSISAANSLHFLPASPYRKSTPSAASSLVLPKRNPFRVFSDDGDGDSGGPDDYDMDDDEMEEVDNKKDFDIEYDPL
        MNSTVFLLS P   PPPT++R+R+ SISAA SL  LP+ PYRKSTPS AS L LP+RNPFRVFSDDGDGDSGGPDDYDMDD+EMEEVDNKKDFDIEYDPL
Subjt:  MNSTVFLLSSPSLPPPPTVHRIRSPSISAANSLHFLPASPYRKSTPSAASSLVLPKRNPFRVFSDDGDGDSGGPDDYDMDDDEMEEVDNKKDFDIEYDPL

Query:  AAAAAAAAGSGGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIR
        AAAAAAAAGS GVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIR
Subjt:  AAAAAAAAGSGGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIR

Query:  CAQSEYGRYNVTEPPIDAPRDPLYKSEKEVLKVFLRKHFRNRRLRDPEFVLDLEEIYVIDSKTKSITRAKVLVTVPGGRDRDRRNDLLVVRDNGNSFKII
        CAQS+YG YNVTEPPIDAPRDPLYKSEKEVLKVFL KHFRNRRLRDPEFVLD EEIYVIDSKTKSITRA+VLVTVPGGRDRDRR+DLLVVRDNGNSFKII
Subjt:  CAQSEYGRYNVTEPPIDAPRDPLYKSEKEVLKVFLRKHFRNRRLRDPEFVLDLEEIYVIDSKTKSITRAKVLVTVPGGRDRDRRNDLLVVRDNGNSFKII

Query:  HSSERDDPTTVIGKEEWTKSRQDMERHLSKLRDFSISNWF
        HSSERDDPTTVI KEEWTK+RQDMERHL KLRDFSISN F
Subjt:  HSSERDDPTTVIGKEEWTKSRQDMERHLSKLRDFSISNWF

KAG6591867.1 PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

6.2e-169

91.2

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Query:  MNSTVFLLSSPSLPPPPTVHRIRSPSISAANSLHFLPASPYRKSTPSAASSLVLPKRNPFRVFSDDGDGDSGGPDDYDMDDDEMEEVDNKKDFDIEYDPL
        MNSTVFLLSSP   PP T+HR+R PSISAA+SLH LP+ PYRKSTPS AS L +P+RNPFRVFSDDGDGDSGGPDDYDM DDEMEEVDNKKDFDIEYD L
Subjt:  MNSTVFLLSSPSLPPPPTVHRIRSPSISAANSLHFLPASPYRKSTPSAASSLVLPKRNPFRVFSDDGDGDSGGPDDYDMDDDEMEEVDNKKDFDIEYDPL

Query:  -AAAAAAAAGSGGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYI
         AAAAAAAAGS GVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYI
Subjt:  -AAAAAAAAGSGGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYI

Query:  RCAQSEYGRYNVTEPPIDAPRDPLYKSEKEVLKVFLRKHFRNRRLRDPEFVLDLEEIYVIDSKTKSITRAKVLVTVPGGRDRDRRNDLLVVRDNGNSFKI
        RCAQS+YG YNVTEPPIDAPRDPLYKSEKEVLKVFL KHFRNRRL DPEFVLD EEIYVIDSKTKSITRAKVLVTVPGGR RDRR+DLLVVRDNGNSFKI
Subjt:  RCAQSEYGRYNVTEPPIDAPRDPLYKSEKEVLKVFLRKHFRNRRLRDPEFVLDLEEIYVIDSKTKSITRAKVLVTVPGGRDRDRRNDLLVVRDNGNSFKI

Query:  IHSSERDDPTTVIGKEEWTKSRQDMERHLSKLRDFSISNWF
        IHSSERDDPTTVI KEEWTK+RQDMERHL KLRDFSISNWF
Subjt:  IHSSERDDPTTVIGKEEWTKSRQDMERHLSKLRDFSISNWF

XP_008444205.1 PREDICTED: uncharacterized protein LOC103487613 [Cucumis melo]

3.9e-171

91.47

Show/hide

Query:  MNSTVFLLSSPSLPPPPTVHRIRSPSISAANSLHFLPASPYRKSTPSAASSLVLPKRNPFRVFSDDGDGDSGGPDDYDMDDDEMEEVDNKKDFDIEYDPL
        MNSTVFLLS P   PPPT++R+R+ SISAA SL  LP+ PYRKSTPS AS L LP+RNPFRVFSDDGDGDSGGPDDYDMDD+EMEEVDNKKDFDIEYDPL
Subjt:  MNSTVFLLSSPSLPPPPTVHRIRSPSISAANSLHFLPASPYRKSTPSAASSLVLPKRNPFRVFSDDGDGDSGGPDDYDMDDDEMEEVDNKKDFDIEYDPL

Query:  AAAAAAAAGSGGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIR
        AAAAAAAAGS GVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIR
Subjt:  AAAAAAAAGSGGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIR

Query:  CAQSEYGRYNVTEPPIDAPRDPLYKSEKEVLKVFLRKHFRNRRLRDPEFVLDLEEIYVIDSKTKSITRAKVLVTVPGGRDRDRRNDLLVVRDNGNSFKII
        CAQS+YG YNVTEPPIDAPRDPLYKSEKEVLKVFL KHFRNRRLRDPEFVLD EEIYVIDSKTKSITRA+VLVTVPGGRDRDRR+DLLVVRDNGNSFKII
Subjt:  CAQSEYGRYNVTEPPIDAPRDPLYKSEKEVLKVFLRKHFRNRRLRDPEFVLDLEEIYVIDSKTKSITRAKVLVTVPGGRDRDRRNDLLVVRDNGNSFKII

Query:  HSSERDDPTTVIGKEEWTKSRQDMERHLSKLRDFSISNWF
        HSSERDDPTTVI KEEWTK+RQDMERHL KLRDFSISNWF
Subjt:  HSSERDDPTTVIGKEEWTKSRQDMERHLSKLRDFSISNWF

XP_031740569.1 uncharacterized protein LOC101213327 [Cucumis sativus]

1.4e-168

90.29

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Query:  MNSTVFLLSSPSLPPPPTVHRIRSPSISAANSLHFLPASPYRKSTPSAASSLVLPKRNPFRVFSDDGDGDSGGPDDYDMDDDEMEEVDNKKDFDIEYDPL
        MNSTVFLLSSP   PPPT++R+R  SIS+A SL  LP+ PY K+TP  AS L LP+RNPFRVFSDDGDGDSGGPDDYDMDD+EMEEVDNKKDFDIEYDPL
Subjt:  MNSTVFLLSSPSLPPPPTVHRIRSPSISAANSLHFLPASPYRKSTPSAASSLVLPKRNPFRVFSDDGDGDSGGPDDYDMDDDEMEEVDNKKDFDIEYDPL

Query:  AAAAAAAAGSGGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIR
        AAAAAAAAGS GVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPD+DVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIR
Subjt:  AAAAAAAAGSGGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIR

Query:  CAQSEYGRYNVTEPPIDAPRDPLYKSEKEVLKVFLRKHFRNRRLRDPEFVLDLEEIYVIDSKTKSITRAKVLVTVPGGRDRDRRNDLLVVRDNGNSFKII
        CAQS+YG YNVTEPPID+PRDPLYKSEKEVLKVFL KHFRNRRLRDPEFVLD EEIYVIDSKTKSITRAKVLVTVPGGRDRDRR+DLLVVRDNGNSFKII
Subjt:  CAQSEYGRYNVTEPPIDAPRDPLYKSEKEVLKVFLRKHFRNRRLRDPEFVLDLEEIYVIDSKTKSITRAKVLVTVPGGRDRDRRNDLLVVRDNGNSFKII

Query:  HSSERDDPTTVIGKEEWTKSRQDMERHLSKLRDFSISNWF
        HSSERDDPTTVI KEEWTK+RQDMERHL KLRDFSISNWF
Subjt:  HSSERDDPTTVIGKEEWTKSRQDMERHLSKLRDFSISNWF

XP_038896770.1 uncharacterized protein LOC120085024 [Benincasa hispida]

6.2e-169

90.59

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Query:  MNSTVFLLSSPSLPPPPTVHRIRSPSISAANSLHFLPASPYRKSTPSAASSLVLPKRNPFRVFSDDGDGDSGGPDDYDMDDDEMEEVDNKKDFDIEYDPL
        MNSTV L+SSP L  P T++R+R+ SISAA+SL  LP+ PYRKSTPS  S L  P+RNPFRVFSDDGDGDSGGPDDYDMDD+EMEEVDNKKDFDIEYDPL
Subjt:  MNSTVFLLSSPSLPPPPTVHRIRSPSISAANSLHFLPASPYRKSTPSAASSLVLPKRNPFRVFSDDGDGDSGGPDDYDMDDDEMEEVDNKKDFDIEYDPL

Query:  AAAAAAAAGSGGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIR
        AAAAAAAAGS GVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIR
Subjt:  AAAAAAAAGSGGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIR

Query:  CAQSEYGRYNVTEPPIDAPRDPLYKSEKEVLKVFLRKHFRNRRLRDPEFVLDLEEIYVIDSKTKSITRAKVLVTVPGGRDRDRRNDLLVVRDNGNSFKII
        CAQS+YG YNVTEPPIDAPRDPLYKSEKEVLKVFL KHFRNRRLRDPEFVLD EEIYVIDSKTKSITRAKVLVTVPGGRDRDRR+DLLVVRDNGNSFKII
Subjt:  CAQSEYGRYNVTEPPIDAPRDPLYKSEKEVLKVFLRKHFRNRRLRDPEFVLDLEEIYVIDSKTKSITRAKVLVTVPGGRDRDRRNDLLVVRDNGNSFKII

Query:  HSSERDDPTTVIGKEEWTKSRQDMERHLSKLRDFSISNWF
        HSSERDDPTTVI KEEWTK+RQDMERHL KLRDFSISNWF
Subjt:  HSSERDDPTTVIGKEEWTKSRQDMERHLSKLRDFSISNWF

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BAM8 uncharacterized protein LOC103487613

1.9e-171

91.47

Show/hide

Query:  MNSTVFLLSSPSLPPPPTVHRIRSPSISAANSLHFLPASPYRKSTPSAASSLVLPKRNPFRVFSDDGDGDSGGPDDYDMDDDEMEEVDNKKDFDIEYDPL
        MNSTVFLLS P   PPPT++R+R+ SISAA SL  LP+ PYRKSTPS AS L LP+RNPFRVFSDDGDGDSGGPDDYDMDD+EMEEVDNKKDFDIEYDPL
Subjt:  MNSTVFLLSSPSLPPPPTVHRIRSPSISAANSLHFLPASPYRKSTPSAASSLVLPKRNPFRVFSDDGDGDSGGPDDYDMDDDEMEEVDNKKDFDIEYDPL

Query:  AAAAAAAAGSGGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIR
        AAAAAAAAGS GVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIR
Subjt:  AAAAAAAAGSGGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIR

Query:  CAQSEYGRYNVTEPPIDAPRDPLYKSEKEVLKVFLRKHFRNRRLRDPEFVLDLEEIYVIDSKTKSITRAKVLVTVPGGRDRDRRNDLLVVRDNGNSFKII
        CAQS+YG YNVTEPPIDAPRDPLYKSEKEVLKVFL KHFRNRRLRDPEFVLD EEIYVIDSKTKSITRA+VLVTVPGGRDRDRR+DLLVVRDNGNSFKII
Subjt:  CAQSEYGRYNVTEPPIDAPRDPLYKSEKEVLKVFLRKHFRNRRLRDPEFVLDLEEIYVIDSKTKSITRAKVLVTVPGGRDRDRRNDLLVVRDNGNSFKII

Query:  HSSERDDPTTVIGKEEWTKSRQDMERHLSKLRDFSISNWF
        HSSERDDPTTVI KEEWTK+RQDMERHL KLRDFSISNWF
Subjt:  HSSERDDPTTVIGKEEWTKSRQDMERHLSKLRDFSISNWF

A0A5A7UA32 Uncharacterized protein

6.0e-170

91.18

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Query:  MNSTVFLLSSPSLPPPPTVHRIRSPSISAANSLHFLPASPYRKSTPSAASSLVLPKRNPFRVFSDDGDGDSGGPDDYDMDDDEMEEVDNKKDFDIEYDPL
        MNSTVFLLS P   PPPT++R+R+ SISAA SL  LP+ PYRKSTPS AS L LP+RNPFRVFSDDGDGDSGGPDDYDMDD+EMEEVDNKKDFDIEYDPL
Subjt:  MNSTVFLLSSPSLPPPPTVHRIRSPSISAANSLHFLPASPYRKSTPSAASSLVLPKRNPFRVFSDDGDGDSGGPDDYDMDDDEMEEVDNKKDFDIEYDPL

Query:  AAAAAAAAGSGGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIR
        AAAAAAAAGS GVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIR
Subjt:  AAAAAAAAGSGGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIR

Query:  CAQSEYGRYNVTEPPIDAPRDPLYKSEKEVLKVFLRKHFRNRRLRDPEFVLDLEEIYVIDSKTKSITRAKVLVTVPGGRDRDRRNDLLVVRDNGNSFKII
        CAQS+YG YNVTEPPIDAPRDPLYKSEKEVLKVFL KHFRNRRLRDPEFVLD EEIYVIDSKTKSITRA+VLVTVPGGRDRDRR+DLLVVRDNGNSFKII
Subjt:  CAQSEYGRYNVTEPPIDAPRDPLYKSEKEVLKVFLRKHFRNRRLRDPEFVLDLEEIYVIDSKTKSITRAKVLVTVPGGRDRDRRNDLLVVRDNGNSFKII

Query:  HSSERDDPTTVIGKEEWTKSRQDMERHLSKLRDFSISNWF
        HSSERDDPTTVI KEEWTK+RQDMERHL KLRDFSISN F
Subjt:  HSSERDDPTTVIGKEEWTKSRQDMERHLSKLRDFSISNWF

A0A5J5BWI0 Uncharacterized protein

2.0e-136

72.94

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Query:  MNSTVFLLSSPSLPPPPTVHRIRSPSISAANSLHFLPASPYRKSTPSAASSLVLPKRNPFRVFSDDGDGDSGGPDDYDMDDDEMEEVDNKKDFDIEYDPL
        M +T+ L   P LPP       + P ++   SLH  P   +    P    + V   R  FRV++DDGD D GGPDDYDMD++E+EEVDNKKD+D+EYDPL
Subjt:  MNSTVFLLSSPSLPPPPTVHRIRSPSISAANSLHFLPASPYRKSTPSAASSLVLPKRNPFRVFSDDGDGDSGGPDDYDMDDDEMEEVDNKKDFDIEYDPL

Query:  AAAAAAAAGSGGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIR
        AAAAA+A G G  GD++I +V SKSFVS QGWDSE IVDYRINE+EFHKISLL CDFFIRKPPDPDNDVYDFREMYVTPPDTD+YAIP+VLAP+PQKYIR
Subjt:  AAAAAAAAGSGGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIR

Query:  CAQSEYGRYNVTEPPIDAPRDPLYKSEKEVLKVFLRKHFRNRRLRDPEFVLDLEEIYVIDSKTKSITRAKVLVTVPGGRDRDRRNDLLVVRDNGNSFKII
        CA+S+YG YNVTEPPIDAPRDPLYKSE E+ KVFL KH+RNRRL DPEFVLD EEIYVIDSKTKSITRAKVLVTVPGGR+RDR+ DLLV+RDNGNSFKII
Subjt:  CAQSEYGRYNVTEPPIDAPRDPLYKSEKEVLKVFLRKHFRNRRLRDPEFVLDLEEIYVIDSKTKSITRAKVLVTVPGGRDRDRRNDLLVVRDNGNSFKII

Query:  HSSERDDPTTVIGKEEWTKSRQDMERHLSKLRDFSISNWF
        HSS+R+DPTTVI +EEW K+RQDMERHL KLRDFS+SNWF
Subjt:  HSSERDDPTTVIGKEEWTKSRQDMERHLSKLRDFSISNWF

A0A6J1F6A7 uncharacterized protein LOC111442572

7.4e-168

90.38

Show/hide

Query:  MNSTVFLLSSPSLPPPPTVHRIRSPSISAANSLHFLPASPYRKSTPSAASSLVLPKRNPFRVFSDDGDGDSGGPDDYDMDDDEMEEVDNKKDFDIEYDPL
        MNSTVFLLSSP   PP T+HR+R PSISAA+SLH LP+  YRKSTPS AS L +P+RNPFRVFSDDGDGDSGGPDDYDM DDEMEEVDNKKDFDIEYD L
Subjt:  MNSTVFLLSSPSLPPPPTVHRIRSPSISAANSLHFLPASPYRKSTPSAASSLVLPKRNPFRVFSDDGDGDSGGPDDYDMDDDEMEEVDNKKDFDIEYDPL

Query:  ---AAAAAAAAGSGGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQK
           AAAAAAAAGS GVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQK
Subjt:  ---AAAAAAAAGSGGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQK

Query:  YIRCAQSEYGRYNVTEPPIDAPRDPLYKSEKEVLKVFLRKHFRNRRLRDPEFVLDLEEIYVIDSKTKSITRAKVLVTVPGGRDRDRRNDLLVVRDNGNSF
        YIRCAQS+YG YNVTEPPIDAPRDPLYKSEKEVLKVFL KHFRNRRL DPEFVLD EEIYVIDSKTKSITRAKVLVTVPGGR RDRR+DLLVVRDNGNSF
Subjt:  YIRCAQSEYGRYNVTEPPIDAPRDPLYKSEKEVLKVFLRKHFRNRRLRDPEFVLDLEEIYVIDSKTKSITRAKVLVTVPGGRDRDRRNDLLVVRDNGNSF

Query:  KIIHSSERDDPTTVIGKEEWTKSRQDMERHLSKLRDFSISNWF
        KIIHSSERDDPTTVI KEEWTK+RQDMERHL KLRDFSISNWF
Subjt:  KIIHSSERDDPTTVIGKEEWTKSRQDMERHLSKLRDFSISNWF

A0A6J1IGR4 uncharacterized protein LOC111477076

1.5e-168

90.38

Show/hide

Query:  MNSTVFLLSSPSLPPPPTVHRIRSPSISAANSLHFLPASPYRKSTPSAASSLVLPKRNPFRVFSDDGDGDSGGPDDYDMDDDEMEEVDNKKDFDIEYDPL
        MNSTVFLLSSP   PP T+HR+R PSISAA+SL  LP+ PYRKSTPS AS L +P+RNPFRVFSDDGDGDSGGPDDYDM DDEMEEVDNKKDFDIEYD L
Subjt:  MNSTVFLLSSPSLPPPPTVHRIRSPSISAANSLHFLPASPYRKSTPSAASSLVLPKRNPFRVFSDDGDGDSGGPDDYDMDDDEMEEVDNKKDFDIEYDPL

Query:  ---AAAAAAAAGSGGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQK
           AAAAAAAAGS GVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQK
Subjt:  ---AAAAAAAAGSGGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQK

Query:  YIRCAQSEYGRYNVTEPPIDAPRDPLYKSEKEVLKVFLRKHFRNRRLRDPEFVLDLEEIYVIDSKTKSITRAKVLVTVPGGRDRDRRNDLLVVRDNGNSF
        YIRCAQS+YG YNVTEPPIDAPRDPLYKSEKEVLKVFL KHFRNRRL DPEFVLD EEIYVIDSKTKSITRAKVLVTVPGGR RDRR+DLLVVRDNGNSF
Subjt:  YIRCAQSEYGRYNVTEPPIDAPRDPLYKSEKEVLKVFLRKHFRNRRLRDPEFVLDLEEIYVIDSKTKSITRAKVLVTVPGGRDRDRRNDLLVVRDNGNSF

Query:  KIIHSSERDDPTTVIGKEEWTKSRQDMERHLSKLRDFSISNWF
        KIIHSSERDDPTTVI KEEWTK+RQDMERHL KLRDFSISNWF
Subjt:  KIIHSSERDDPTTVIGKEEWTKSRQDMERHLSKLRDFSISNWF

SwissProt top hits

e value

%identity

Alignment

Q9XI19 PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic

4.5e-130

80.8

Show/hide

Query:  DDGDGDSGGPDDYDMDDDEMEEVDNKKDFDIEYDPLAAAAAAAAGSGGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPD
        DD D D GG D+YDMDD+E+EEVDNKKD+D+EYDPLAAA AAA   GG GD +I+ VQSKSF+STQGWDS+M+VDYRINE+EFHK+SL+ CDFFIRKPPD
Subjt:  DDGDGDSGGPDDYDMDDDEMEEVDNKKDFDIEYDPLAAAAAAAAGSGGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPD

Query:  PDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIRCAQSEYGRYNVTEPPIDAPRDPLYKSEKEVLKVFLRKHFRNRRLRDPEFVLDLEEIYVIDSKTK
        PDNDVYDFREMYVTPPDTD+Y+IP+VLAPMPQKYIRCA S+YG YNVTEPPIDAPRDPLYKSE+E+ KVFL KH+RNRR  DPEFVLDLEEIYVIDSKTK
Subjt:  PDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIRCAQSEYGRYNVTEPPIDAPRDPLYKSEKEVLKVFLRKHFRNRRLRDPEFVLDLEEIYVIDSKTK

Query:  SITRAKVLVTVPGGRDRDRRNDLLVVRDNGNSFKIIHSSERDDPTTVIGKEEWTKSRQDMERHLSKLRDFSISNWF
        SITRA+VLVTVPGGR RDR++DLLV+RDNG SFKIIH  ERDDPTTVI +EEWTK+R+DME+HL KLRDFS+SNWF
Subjt:  SITRAKVLVTVPGGRDRDRRNDLLVVRDNGNSFKIIHSSERDDPTTVIGKEEWTKSRQDMERHLSKLRDFSISNWF

Arabidopsis top hits

e value

%identity

Alignment

AT1G21600.1 plastid transcriptionally active 6

3.2e-131

80.8

Show/hide

Query:  DDGDGDSGGPDDYDMDDDEMEEVDNKKDFDIEYDPLAAAAAAAAGSGGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPD
        DD D D GG D+YDMDD+E+EEVDNKKD+D+EYDPLAAA AAA   GG GD +I+ VQSKSF+STQGWDS+M+VDYRINE+EFHK+SL+ CDFFIRKPPD
Subjt:  DDGDGDSGGPDDYDMDDDEMEEVDNKKDFDIEYDPLAAAAAAAAGSGGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPD

Query:  PDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIRCAQSEYGRYNVTEPPIDAPRDPLYKSEKEVLKVFLRKHFRNRRLRDPEFVLDLEEIYVIDSKTK
        PDNDVYDFREMYVTPPDTD+Y+IP+VLAPMPQKYIRCA S+YG YNVTEPPIDAPRDPLYKSE+E+ KVFL KH+RNRR  DPEFVLDLEEIYVIDSKTK
Subjt:  PDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIRCAQSEYGRYNVTEPPIDAPRDPLYKSEKEVLKVFLRKHFRNRRLRDPEFVLDLEEIYVIDSKTK

Query:  SITRAKVLVTVPGGRDRDRRNDLLVVRDNGNSFKIIHSSERDDPTTVIGKEEWTKSRQDMERHLSKLRDFSISNWF
        SITRA+VLVTVPGGR RDR++DLLV+RDNG SFKIIH  ERDDPTTVI +EEWTK+R+DME+HL KLRDFS+SNWF
Subjt:  SITRAKVLVTVPGGRDRDRRNDLLVVRDNGNSFKIIHSSERDDPTTVIGKEEWTKSRQDMERHLSKLRDFSISNWF

AT1G21600.2 plastid transcriptionally active 6

3.2e-131

80.8

Show/hide

Query:  DDGDGDSGGPDDYDMDDDEMEEVDNKKDFDIEYDPLAAAAAAAAGSGGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPD
        DD D D GG D+YDMDD+E+EEVDNKKD+D+EYDPLAAA AAA   GG GD +I+ VQSKSF+STQGWDS+M+VDYRINE+EFHK+SL+ CDFFIRKPPD
Subjt:  DDGDGDSGGPDDYDMDDDEMEEVDNKKDFDIEYDPLAAAAAAAAGSGGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPD

Query:  PDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIRCAQSEYGRYNVTEPPIDAPRDPLYKSEKEVLKVFLRKHFRNRRLRDPEFVLDLEEIYVIDSKTK
        PDNDVYDFREMYVTPPDTD+Y+IP+VLAPMPQKYIRCA S+YG YNVTEPPIDAPRDPLYKSE+E+ KVFL KH+RNRR  DPEFVLDLEEIYVIDSKTK
Subjt:  PDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIRCAQSEYGRYNVTEPPIDAPRDPLYKSEKEVLKVFLRKHFRNRRLRDPEFVLDLEEIYVIDSKTK

Query:  SITRAKVLVTVPGGRDRDRRNDLLVVRDNGNSFKIIHSSERDDPTTVIGKEEWTKSRQDMERHLSKLRDFSISNWF
        SITRA+VLVTVPGGR RDR++DLLV+RDNG SFKIIH  ERDDPTTVI +EEWTK+R+DME+HL KLRDFS+SNWF
Subjt:  SITRAKVLVTVPGGRDRDRRNDLLVVRDNGNSFKIIHSSERDDPTTVIGKEEWTKSRQDMERHLSKLRDFSISNWF

Sequences

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CDS sequence

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ATGAACTCCACCGTCTTCCTCCTCTCCTCGCCGTCGCTGCCGCCGCCGCCCACAGTCCACCGCATCCGATCCCCCTCCATCTCCGCCGCCAACTCTCTCCACTTCCTCCC
AGCCTCGCCCTACCGGAAATCCACTCCCTCCGCCGCATCCTCTCTCGTCCTCCCTAAACGAAACCCTTTCCGCGTCTTCTCCGACGACGGCGACGGCGACAGCGGCGGCC
CCGACGACTACGACATGGACGACGATGAAATGGAGGAAGTCGACAACAAGAAGGATTTCGACATCGAGTACGATCCTCTAGCCGCGGCAGCCGCTGCGGCCGCGGGTTCT
GGCGGAGTAGGCGACGAGAATATCTCGATTGTGCAGAGCAAAAGCTTCGTGTCCACACAGGGCTGGGATTCGGAGATGATTGTTGATTATAGGATAAATGAAGAGGAATT
TCATAAGATTAGTTTGTTGCATTGTGATTTCTTCATCAGGAAGCCGCCGGATCCGGATAATGATGTTTATGATTTCAGAGAGATGTATGTTACTCCTCCAGACACTGATG
TTTATGCAATCCCCAAAGTTCTTGCTCCAATGCCTCAGAAGTATATTAGATGTGCTCAGAGTGAATATGGACGCTACAATGTTACAGAGCCACCCATTGATGCACCTAGA
GATCCATTATACAAGTCGGAGAAAGAGGTTCTTAAGGTTTTCTTGAGAAAGCACTTCAGAAACCGGAGGCTCCGTGACCCAGAATTTGTCTTGGACTTGGAGGAAATATA
TGTAATTGATTCAAAAACCAAGTCAATCACTAGGGCAAAAGTCTTGGTCACAGTTCCAGGAGGAAGAGATAGGGACAGGAGAAATGACTTGCTTGTAGTTAGGGATAACG
GGAACTCATTCAAGATTATTCATTCGAGCGAGCGAGATGATCCGACCACGGTGATAGGGAAGGAGGAGTGGACCAAATCTCGACAAGATATGGAGAGACATCTTAGTAAG
CTAAGGGACTTCAGCATTTCAAATTGGTTTTAA

mRNA sequence

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CTAAAATGTTGACAGAATTTATTTTCAAGAAAAATCTCCAGTGAGATATTTATTTAACAAAACATTTATATAATATGTTTTTTAGTTATTTTTTGTAACATTATCTACGA
ATAAAGTCCGCGCCCGTCGATTGGGAAACACAGCGTTGGGGAGTTAACTCGTGCTCTATTATTAGCCCCGCCGCCATGAACTCCACCGTCTTCCTCCTCTCCTCGCCGTC
GCTGCCGCCGCCGCCCACAGTCCACCGCATCCGATCCCCCTCCATCTCCGCCGCCAACTCTCTCCACTTCCTCCCAGCCTCGCCCTACCGGAAATCCACTCCCTCCGCCG
CATCCTCTCTCGTCCTCCCTAAACGAAACCCTTTCCGCGTCTTCTCCGACGACGGCGACGGCGACAGCGGCGGCCCCGACGACTACGACATGGACGACGATGAAATGGAG
GAAGTCGACAACAAGAAGGATTTCGACATCGAGTACGATCCTCTAGCCGCGGCAGCCGCTGCGGCCGCGGGTTCTGGCGGAGTAGGCGACGAGAATATCTCGATTGTGCA
GAGCAAAAGCTTCGTGTCCACACAGGGCTGGGATTCGGAGATGATTGTTGATTATAGGATAAATGAAGAGGAATTTCATAAGATTAGTTTGTTGCATTGTGATTTCTTCA
TCAGGAAGCCGCCGGATCCGGATAATGATGTTTATGATTTCAGAGAGATGTATGTTACTCCTCCAGACACTGATGTTTATGCAATCCCCAAAGTTCTTGCTCCAATGCCT
CAGAAGTATATTAGATGTGCTCAGAGTGAATATGGACGCTACAATGTTACAGAGCCACCCATTGATGCACCTAGAGATCCATTATACAAGTCGGAGAAAGAGGTTCTTAA
GGTTTTCTTGAGAAAGCACTTCAGAAACCGGAGGCTCCGTGACCCAGAATTTGTCTTGGACTTGGAGGAAATATATGTAATTGATTCAAAAACCAAGTCAATCACTAGGG
CAAAAGTCTTGGTCACAGTTCCAGGAGGAAGAGATAGGGACAGGAGAAATGACTTGCTTGTAGTTAGGGATAACGGGAACTCATTCAAGATTATTCATTCGAGCGAGCGA
GATGATCCGACCACGGTGATAGGGAAGGAGGAGTGGACCAAATCTCGACAAGATATGGAGAGACATCTTAGTAAGCTAAGGGACTTCAGCATTTCAAATTGGTTTTAAAC
AACTATTCAATCTGCAAAACTTGTTCAGGATCCTCCTCTGTCTAGAAGTGAGGACATGAAATGTGGTTCTGAAGTTCAAGTTTTGACATGAATGAGACAGCCGTATTATC
ACGATGATTCTCTCGTGCGAGTTCTCGACATGGCTCCTGCCCTCATGATCGGTAATGAGTTCGATTATAGCTGATTTATCCTTCTTGCTTTTAATTATTTATCGCAAGAT
AGAGTTATTAGTCAGAAAAGCTAGTTTTTTTTTTCTTTGTAGATTTGTAATGCTTAGAGAACTTATTAAAGCTGCTGCATCTTTTGGCTGTTACTGCTGTAGTTGGCTAT
TGTTTTGAATGACCGTTGTAAGAAAAGTTTGAAGTCTTTTGTTATATGGGGTTAGAATTGAAGGGGAAAAATACAAATGTGTTCAATTGCTTCTAGTTTCTAGCAATGGT
TCTTTATTATGCTCTA

Protein sequence

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MNSTVFLLSSPSLPPPPTVHRIRSPSISAANSLHFLPASPYRKSTPSAASSLVLPKRNPFRVFSDDGDGDSGGPDDYDMDDDEMEEVDNKKDFDIEYDPLAAAAAAAAGS
GGVGDENISIVQSKSFVSTQGWDSEMIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPQKYIRCAQSEYGRYNVTEPPIDAPR
DPLYKSEKEVLKVFLRKHFRNRRLRDPEFVLDLEEIYVIDSKTKSITRAKVLVTVPGGRDRDRRNDLLVVRDNGNSFKIIHSSERDDPTTVIGKEEWTKSRQDMERHLSK
LRDFSISNWF

Sed0021255 (gene) of Chayote v1 genome