; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0021264 (gene) of Chayote v1 genome

Gene IDSed0021264
OrganismSechium edule (Chayote v1)
DescriptionRibosomal RNA small subunit methyltransferase A
Genome locationLG03:8926888..8930606
RNA-Seq ExpressionSed0021264
SyntenySed0021264
Gene Ontology termsGO:0032259 - methylation (biological process)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152600.1 uncharacterized protein LOC101213956 [Cucumis sativus]1.5e-8390.59Show/hide
Query:  MSVAFPQLSWWLWSGKHKEPRSSN-GSALNPSLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREQRKIDTEYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWWLWSGKHKEPRSSN GSALN SLDTA RE DTLKFPLVNGAN+SSSSRRVKRKWHSRE+RKID EYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MSVAFPQLSWWLWSGKHKEPRSSN-GSALNPSLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREQRKIDTEYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDEDTDNSFAVLVPCYGRIYDDFVDETKNSILTAVGNINDGFSAESDIYVEQWLSSLQN
        GWSEPHGPGFQSD+++DNSFAVLVPCYGRIY+DFVDETKNSIL+AVGNIND FSAES  Y+EQWLSSLQN
Subjt:  GWSEPHGPGFQSDEDTDNSFAVLVPCYGRIYDDFVDETKNSILTAVGNINDGFSAESDIYVEQWLSSLQN
XP_008444920.1 PREDICTED: uncharacterized protein LOC103488121 [Cucumis melo]1.5e-8390Show/hide
Query:  MSVAFPQLSWWLWSGKHKEPRSSN-GSALNPSLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREQRKIDTEYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWWLWSGKHKEPRSSN GSALN SLDTA RE DTLKFPLVNGANISSSSRRVKRKWHSRE+RK+D EYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MSVAFPQLSWWLWSGKHKEPRSSN-GSALNPSLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREQRKIDTEYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDEDTDNSFAVLVPCYGRIYDDFVDETKNSILTAVGNINDGFSAESDIYVEQWLSSLQN
        GWSEPHGPGFQSD+++DNSFAVLVPCYGRIY+DFVDETKNSIL+A+GNIND FSAES  Y+EQWLSSLQN
Subjt:  GWSEPHGPGFQSDEDTDNSFAVLVPCYGRIYDDFVDETKNSILTAVGNINDGFSAESDIYVEQWLSSLQN
XP_022132233.1 uncharacterized protein LOC111005141 isoform X2 [Momordica charantia]2.6e-8389.35Show/hide
Query:  MSVAFPQLSWWLWSGKHKEPRSSNGSALNPSLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREQRKIDTEYDIVLVPSDGGCVSGSESDDSDWSIG
        M+VAFPQLSWWLWSGK+KEPRSSNGS LN SLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSRE+RKID EYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWLWSGKHKEPRSSNGSALNPSLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREQRKIDTEYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDEDTDNSFAVLVPCYGRIYDDFVDETKNSILTAVGNINDGFSAESDIYVEQWLSSLQN
        WSEP+GPGFQSD+D DNSFAVLVPCYG +Y+DFVDETKNSIL+AVGNIND FSA+S  Y+EQWLSSLQN
Subjt:  WSEPHGPGFQSDEDTDNSFAVLVPCYGRIYDDFVDETKNSILTAVGNINDGFSAESDIYVEQWLSSLQN
XP_023001877.1 uncharacterized protein LOC111495931 [Cucurbita maxima]2.0e-8388.17Show/hide
Query:  MSVAFPQLSWWLWSGKHKEPRSSNGSALNPSLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREQRKIDTEYDIVLVPSDGGCVSGSESDDSDWSIG
        MSVAFPQLSWW WSGKHKEPR+SNGSA N SLDT IREPDTLKFPL NGANISSSSRRV+RKWHSRE+RKID EYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWLWSGKHKEPRSSNGSALNPSLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREQRKIDTEYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDEDTDNSFAVLVPCYGRIYDDFVDETKNSILTAVGNINDGFSAESDIYVEQWLSSLQN
        WSEPHGPGFQSD++TDNSFAVLVPCYGR+Y+DFVDETKNSIL+A GNIND FSAES  Y+EQWLSSLQ+
Subjt:  WSEPHGPGFQSDEDTDNSFAVLVPCYGRIYDDFVDETKNSILTAVGNINDGFSAESDIYVEQWLSSLQN
XP_038886443.1 uncharacterized protein LOC120076637 [Benincasa hispida]8.9e-8491.18Show/hide
Query:  MSVAFPQLSWWLWSGKHKEPRSSN-GSALNPSLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREQRKIDTEYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWWLWSGKHKEPRSSN GSALN SLDTA RE DTLKFPLVNGANISSSSRRVKRKWHSRE+RKID EYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MSVAFPQLSWWLWSGKHKEPRSSN-GSALNPSLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREQRKIDTEYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDEDTDNSFAVLVPCYGRIYDDFVDETKNSILTAVGNINDGFSAESDIYVEQWLSSLQN
        GWSEPHGPGFQSD+++DNSFAVLVPCYGRIY+DFVDETKNSIL+AVGNIND FSAES  Y+EQWLSSLQN
Subjt:  GWSEPHGPGFQSDEDTDNSFAVLVPCYGRIYDDFVDETKNSILTAVGNINDGFSAESDIYVEQWLSSLQN
TrEMBL top hitse value%identityAlignment
A0A1S3BB05 uncharacterized protein LOC1034881217.3e-8490Show/hide
Query:  MSVAFPQLSWWLWSGKHKEPRSSN-GSALNPSLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREQRKIDTEYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWWLWSGKHKEPRSSN GSALN SLDTA RE DTLKFPLVNGANISSSSRRVKRKWHSRE+RK+D EYDIVLVPSDGGCVSGSESDDSDWSI
Subjt:  MSVAFPQLSWWLWSGKHKEPRSSN-GSALNPSLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREQRKIDTEYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDEDTDNSFAVLVPCYGRIYDDFVDETKNSILTAVGNINDGFSAESDIYVEQWLSSLQN
        GWSEPHGPGFQSD+++DNSFAVLVPCYGRIY+DFVDETKNSIL+A+GNIND FSAES  Y+EQWLSSLQN
Subjt:  GWSEPHGPGFQSDEDTDNSFAVLVPCYGRIYDDFVDETKNSILTAVGNINDGFSAESDIYVEQWLSSLQN
A0A6J1BVP6 uncharacterized protein LOC111005141 isoform X21.2e-8389.35Show/hide
Query:  MSVAFPQLSWWLWSGKHKEPRSSNGSALNPSLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREQRKIDTEYDIVLVPSDGGCVSGSESDDSDWSIG
        M+VAFPQLSWWLWSGK+KEPRSSNGS LN SLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSRE+RKID EYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWLWSGKHKEPRSSNGSALNPSLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREQRKIDTEYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDEDTDNSFAVLVPCYGRIYDDFVDETKNSILTAVGNINDGFSAESDIYVEQWLSSLQN
        WSEP+GPGFQSD+D DNSFAVLVPCYG +Y+DFVDETKNSIL+AVGNIND FSA+S  Y+EQWLSSLQN
Subjt:  WSEPHGPGFQSDEDTDNSFAVLVPCYGRIYDDFVDETKNSILTAVGNINDGFSAESDIYVEQWLSSLQN
A0A6J1GID2 uncharacterized protein LOC1114544871.6e-8388.17Show/hide
Query:  MSVAFPQLSWWLWSGKHKEPRSSNGSALNPSLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREQRKIDTEYDIVLVPSDGGCVSGSESDDSDWSIG
        MSVAFPQLSWW WSGKHKEPR+SNGSA N SLDT IREPDTLKFPL NGANISSSSRRV+RKWHSRE+RKID EYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWLWSGKHKEPRSSNGSALNPSLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREQRKIDTEYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDEDTDNSFAVLVPCYGRIYDDFVDETKNSILTAVGNINDGFSAESDIYVEQWLSSLQN
        WSEPHGPGFQSD++TDNSFAVLVPCYGR+Y+DFVDETKNSIL+A GNIND FSAES  Y+EQWLSSLQ+
Subjt:  WSEPHGPGFQSDEDTDNSFAVLVPCYGRIYDDFVDETKNSILTAVGNINDGFSAESDIYVEQWLSSLQN
A0A6J1K730 uncharacterized protein LOC111492231 isoform X22.7e-7886.47Show/hide
Query:  MSVAFPQLSWWLWSGKHKEPRSSN-GSALNPSLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREQRKIDTEYDIVLVPSDGGCVSGSESDDSDWSI
        MSVAFPQLSWWL SGKHKEP+SSN GSALN SLDTA RE DTLKF LVNGANISSSSRRVKRKWHSRE+RKID EYDIVLVPSDGGC+SGSESDDSDWSI
Subjt:  MSVAFPQLSWWLWSGKHKEPRSSN-GSALNPSLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREQRKIDTEYDIVLVPSDGGCVSGSESDDSDWSI

Query:  GWSEPHGPGFQSDEDTDNSFAVLVPCYGRIYDDFVDETKNSILTAVGNINDGFSAESDIYVEQWLSSLQN
        GWSEPHGPGFQSD+D+DNSFAVLVPCY RIY+DFVDETK S+L+AVGNI+D FS ES  Y+EQWLSSLQN
Subjt:  GWSEPHGPGFQSDEDTDNSFAVLVPCYGRIYDDFVDETKNSILTAVGNINDGFSAESDIYVEQWLSSLQN
A0A6J1KME1 uncharacterized protein LOC1114959319.6e-8488.17Show/hide
Query:  MSVAFPQLSWWLWSGKHKEPRSSNGSALNPSLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREQRKIDTEYDIVLVPSDGGCVSGSESDDSDWSIG
        MSVAFPQLSWW WSGKHKEPR+SNGSA N SLDT IREPDTLKFPL NGANISSSSRRV+RKWHSRE+RKID EYDIVLVPSDGGCVSGSESDDSDWSIG
Subjt:  MSVAFPQLSWWLWSGKHKEPRSSNGSALNPSLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREQRKIDTEYDIVLVPSDGGCVSGSESDDSDWSIG

Query:  WSEPHGPGFQSDEDTDNSFAVLVPCYGRIYDDFVDETKNSILTAVGNINDGFSAESDIYVEQWLSSLQN
        WSEPHGPGFQSD++TDNSFAVLVPCYGR+Y+DFVDETKNSIL+A GNIND FSAES  Y+EQWLSSLQ+
Subjt:  WSEPHGPGFQSDEDTDNSFAVLVPCYGRIYDDFVDETKNSILTAVGNINDGFSAESDIYVEQWLSSLQN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G38060.1 unknown protein2.4e-1047.89Show/hide
Query:  SGSES------DDSDWSIGWSEPHGPGFQS-DEDTDNSFAVLVPCYGRIYDDFVDETKNSILTAVGNINDG
        SGSES      D  +WS+GW+EPHGP FQS DE  D  F VLVPCY  + +       N +L+AV N+ +G
Subjt:  SGSES------DDSDWSIGWSEPHGPGFQS-DEDTDNSFAVLVPCYGRIYDDFVDETKNSILTAVGNINDG
AT4G38060.2 unknown protein8.4e-1648.86Show/hide
Query:  SGSES------DDSDWSIGWSEPHGPGFQS-DEDTDNSFAVLVPCYGRIYDDFVDETKNSILTAVGNINDGFSAESDIYVEQWLSSLQ
        SGSES      D  +WS+GW+EPHGP FQS DE  D  F VLVPCY  + +       N +L+AV N+ +G   +   Y+EQWLSSLQ
Subjt:  SGSES------DDSDWSIGWSEPHGPGFQS-DEDTDNSFAVLVPCYGRIYDDFVDETKNSILTAVGNINDGFSAESDIYVEQWLSSLQ
AT5G65480.1 unknown protein1.0e-1633.14Show/hide
Query:  MSVAFPQLSWWLWSGKHKEPRSSNGSAL--NPSLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREQRKIDTEYDIVLVPSDGGCVSGSESDDSDWS
        M+V+FP+L  WL  G + + R    S    + SL  ++++  T K       + SSS ++ KR W  R       E D +      G V   E DD +WS
Subjt:  MSVAFPQLSWWLWSGKHKEPRSSNGSAL--NPSLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREQRKIDTEYDIVLVPSDGGCVSGSESDDSDWS

Query:  IGWSEPHGPGFQSDEDTDNSFAVLVPCYGRIYDDFVDETKNSILTAVGNINDGFSAESDIYVEQWLSSL
        IGW EPHGPGF++++D    F VLVP Y ++ D   ++  N   +         +A     +EQWLSS+
Subjt:  IGWSEPHGPGFQSDEDTDNSFAVLVPCYGRIYDDFVDETKNSILTAVGNINDGFSAESDIYVEQWLSSL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGTGGCATTTCCCCAACTCTCCTGGTGGTTGTGGAGCGGGAAGCATAAAGAACCTCGATCCTCGAATGGTTCTGCTTTAAACCCTTCATTAGATACAGCCATTCG
GGAACCGGATACTCTAAAATTTCCTTTAGTCAATGGGGCCAACATATCCTCCTCGTCTAGAAGGGTGAAGAGGAAATGGCATAGTCGTGAACAAAGGAAAATTGATACGG
AGTATGACATTGTTCTTGTTCCATCTGATGGAGGGTGCGTCTCAGGGTCCGAGTCGGATGACTCAGATTGGTCTATTGGATGGTCGGAACCACATGGTCCTGGGTTCCAG
AGCGACGAGGACACCGACAACAGTTTCGCCGTGCTGGTACCATGTTATGGACGCATTTACGATGATTTTGTGGACGAAACTAAGAACAGTATCCTAACTGCTGTTGGGAA
CATCAATGATGGCTTTTCTGCTGAGAGCGATATCTATGTGGAACAATGGCTGTCTTCTCTTCAGAACTGA
mRNA sequenceShow/hide mRNA sequence
CTTAATCCATTATTTAAAAGAGGTAGGCAACCACCGCAGCACTCCAAATCCGACCTGGCACAAGTTTTTATCAGATTCCTTTTCCTCTACTCCCACACCTACAGTTCCCA
AACGCATAGTCTCTTCCGTGACGTAGATTCTTCGTAAAGAACTTTATTCTTCAAATCCAAACCGTCCACGTGTTGCACCCATATCAACTCTCAATCCTGCTGCTCGCAGA
CGATAAAGTCCCCGTCCCAGCCTTTCTCACCACGTAATTTAATTTATATTTCAAATTAGGAAATTGGATTGGTGTCAAATGATTACTGGAAAAGCATCGACCCATTCAAC
TGTATCACAAAAAAAAAAAAAAAAAAAAAAATTGCATCTCAAACTTCTTCAATTTTCGGCGATCAATTTCTTGAAATTTTCGTTGTTCAAATCCGAAATTCGTCTATTCA
TTTGCAGAAGAATCATAGCCATTAGAGCTTTTGCTTTGAGATTTTGTTCGTTAAGGTATAGCTGATCTTTATCTGTGTAGCTTTTGCTTTACACTATTGATTTCGTGTTT
GTTTGTGTGTTTGGATCCTTTCTGCGCAAGATTCCTGGATTTCTTTTTGTTACTTTCGGCTACAATGTTTGAAAAGCAAGTTTTCGGAAAGTCAATTACTAGTGCGAGGA
GGAGGTTGCTTCAGGAAGAGATTGAATTAAGTTCCTGTTTCTGTGTTTCGATTTTATGAGCTTTGATGATGATTTAGAGGTATTTTTTTTGAATTTTTGGTGCTTGATTG
ATTCTGAAACATCATGTTTTTCAAAAATAGGAACAATATTTTATTGTAGGTTCTCTGAATCTTGCCGACTTCTTGAGTAGAAGCAATCTCTCGAATTAGATGGGGAAATG
ATTGTTATTGGCCTTAATTGTGAGTTTTGAGAGAGATAAATTTAGTAAAACCGTGTTTCTTTTTTCTGTCACAGCTCGATTTTGTTCGAGATAGTTTCTCGGTAATGGTT
ATTGATTTTGTTATGATTTTGTCTATTTTTTTTTTCTCTGTTAAAGCTTTCACATATAATTCCAATTGGAGTTATATAAAATGAAATCATGTGCTGTTTTTTTTCACGTT
TTTCTGTCTTGATTACTGCAATCTGGAAATTGGCTAAAATTCTTGAAGAACTTTGTGGATTTCCTGATTGGTAAGGCTTGAATCCAAGTCTAATATTGTTCGTTATATCT
CCTGCTGGATCCTTTGTATACATTCGAAACTCTAGCATTTAGTTTATGCTACATTATGTTCGATTGAATTTGCTTGTTTGTTTCTATGTCAACATGTACAGTCTATGTTT
GCAGCAATTTATCTTTTTGTTGTTTCGAAATGTAACGAATTGATCGATTTTTCTTTCTGATATGTTGCTCTTAACAGGGAAAAACTGCATCATTTCACATCTCAGGCCTT
AGTATCTACTTGGGATTAGCTTATATTTCTTTGGAGGGACTTGGTATTGTTTAGTAAAGAGAATTGAACTCACCCATGTCTGTGGCATTTCCCCAACTCTCCTGGTGGTT
GTGGAGCGGGAAGCATAAAGAACCTCGATCCTCGAATGGTTCTGCTTTAAACCCTTCATTAGATACAGCCATTCGGGAACCGGATACTCTAAAATTTCCTTTAGTCAATG
GGGCCAACATATCCTCCTCGTCTAGAAGGGTGAAGAGGAAATGGCATAGTCGTGAACAAAGGAAAATTGATACGGAGTATGACATTGTTCTTGTTCCATCTGATGGAGGG
TGCGTCTCAGGGTCCGAGTCGGATGACTCAGATTGGTCTATTGGATGGTCGGAACCACATGGTCCTGGGTTCCAGAGCGACGAGGACACCGACAACAGTTTCGCCGTGCT
GGTACCATGTTATGGACGCATTTACGATGATTTTGTGGACGAAACTAAGAACAGTATCCTAACTGCTGTTGGGAACATCAATGATGGCTTTTCTGCTGAGAGCGATATCT
ATGTGGAACAATGGCTGTCTTCTCTTCAGAACTGATGCACAGTAGTTATAACCGTTGCACGCTGATGGTAATGCTCTGTTTCCAAGAAGAAATCATCCTGTGATATTTAG
CCATTAATTTTTTTTATAAAAAAAATAGAAATTATAAAAAAGAAACTATCTATTCTGGCTTCTTGTAATTATAAAACTGAGAAGCAAATTGGAAGAAAAGATAAGATCCA
ATCAGTGGGTGGAATCTTTTCAATTATTTTGACCATGCTCTAAAGACCTCATCTGGAATGAAGCTTCTTAACATGGGCTGTAAATACTTTTGAGACTCCTTTGTAAATAT
GGAAGCTTGAGCCAACCAGCTGGGTTTGAAGAAAATGAATATTAAAAAAAAAAAAAGAGGTGAGAGTGAAGTGGCTTTTAGTTCTTTGAAGTTCAGTTAGTTATTGTATA
GAGTGGGATGTGTTTAATTTATATGAAGGTTGTTGTAAATAGTGACTCATTTTTATGCATCATGTAAATATGATCTTAGTGGGTTTGGTTTGTAAATGGTGACCTCATTT
GTAAAATTTGTTGTACATAGTAACACAGTTATGTAGGCATGTAAATATCTCTCCCCCTATTCAATGTAATATTCTTTATATTTGTATATTTAGCATTAAAGCCCTATTAT
TTACAAAGTTTGACTGAATTATTTCGTTTCTTGTATTAGTTGGCTTGTTTGTAATGAGAATATAATTTTCAGATTATCAGTGTAAA
Protein sequenceShow/hide protein sequence
MSVAFPQLSWWLWSGKHKEPRSSNGSALNPSLDTAIREPDTLKFPLVNGANISSSSRRVKRKWHSREQRKIDTEYDIVLVPSDGGCVSGSESDDSDWSIGWSEPHGPGFQ
SDEDTDNSFAVLVPCYGRIYDDFVDETKNSILTAVGNINDGFSAESDIYVEQWLSSLQN