CuGenDBv2

Gene ID	Sed0021278
Organism	Sechium edule (Chayote v1)
Description	mediator of RNA polymerase II transcription subunit 27
Genome location	LG02:41937096..41944122
RNA-Seq Expression	Sed0021278
Synteny	Sed0021278
Gene Ontology terms	GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0045893 - positive regulation of transcription, DNA-templated (biological process) GO:0016592 - mediator complex (cellular component) GO:0003713 - transcription coactivator activity (molecular function)
InterPro domains	IPR021627 - Mediator complex, subunit Med27

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022151438.1 mediator of RNA polymerase II transcription subunit 27 [Momordica charantia]

1.3e-203

85.45

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Query:  MRQTPQQQPPQGQTATVSPSIAPPQYSGEEEEGPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVG
        MRQT  QQP QGQTATVSP+ A P   G  EE PPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTA PHQSTKPLHLFQKED SMRQHL DLRAVG
Subjt:  MRQTPQQQPPQGQTATVSPSIAPPQYSGEEEEGPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVG

Query:  KQLEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNIEPVLKKPRFSHGVTNIKHEE
        KQLEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDE+  N+EP LKKP FSHGVT IK +E
Subjt:  KQLEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNIEPVLKKPRFSHGVTNIKHEE

Query:  VNDSKSLSDILACMEKEVPDLKIFTYERLDWLKQASALASQANENSIGAMKEHNYHSPRMSPRSLGATPMDKTAVIELIIPSVFRAVVSLHPVGSVEPDA
        +N+ ++LSDIL CMEKEVPDLKIFTYERLDWLKQA AL+SQAN+NSIGA+KEHNYHSPRM P SL A+  DK +VIELIIPSVFRAVVSLHPVGSVEPDA
Subjt:  VNDSKSLSDILACMEKEVPDLKIFTYERLDWLKQASALASQANENSIGAMKEHNYHSPRMSPRSLGATPMDKTAVIELIIPSVFRAVVSLHPVGSVEPDA

Query:  VAFFSPDERGSHVHSRGFSNHHLFRHVTEHAATVLQYFIGIQEKAALHPLLLWISSYQNLFSKPCSKCGRLLSMNKQSDLLLPPAIRPYKQFCSSKVSSS
        VAFF+PDERGS+VH+RGFS HHLFRHVTEHAATVLQYF+GIQEKAAL+PLLLWI SYQNLFSK CSKCGRLLS+NKQSDLLLPPAIRPYKQFC+S+V S+
Subjt:  VAFFSPDERGSHVHSRGFSNHHLFRHVTEHAATVLQYFIGIQEKAALHPLLLWISSYQNLFSKPCSKCGRLLSMNKQSDLLLPPAIRPYKQFCSSKVSSS

Query:  VPIATSKDQKLDSVQAFHIGCFSEGL
        VPI++ KDQ+ D VQAFHIGCFSE L
Subjt:  VPIATSKDQKLDSVQAFHIGCFSEGL

XP_022940393.1 mediator of RNA polymerase II transcription subunit 27 [Cucurbita moschata]

2.2e-211

89.39

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Query:  MRQTPQQQPPQGQTATVSPSIAPPQYSGEEEEGPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVG
        MRQT  Q P QG TATVSP+      SG  EE PPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVG
Subjt:  MRQTPQQQPPQGQTATVSPSIAPPQYSGEEEEGPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVG

Query:  KQLEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNIEPVLKKPRFSHGVTNIKHEE
        KQLEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLD+ENGSN+EP  KKP FSHGVT++K EE
Subjt:  KQLEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNIEPVLKKPRFSHGVTNIKHEE

Query:  VNDSKSLSDILACMEKEVPDLKIFTYERLDWLKQASALASQANENSIGAMKEHNYHSPRMSPRSLGATPMDKTAVIELIIPSVFRAVVSLHPVGSVEPDA
        +NDS SLSDIL CMEKEVPDLKIFTYERLDWLKQASAL SQANENSIGA+KEHNYHSPRMSPRSL AT  DK AVIELIIPSVFRAVVSLHPVGSVEPDA
Subjt:  VNDSKSLSDILACMEKEVPDLKIFTYERLDWLKQASALASQANENSIGAMKEHNYHSPRMSPRSLGATPMDKTAVIELIIPSVFRAVVSLHPVGSVEPDA

Query:  VAFFSPDERGSHVHSRGFSNHHLFRHVTEHAATVLQYFIGIQEKAALHPLLLWISSYQNLFSKPCSKCGRLLSMNKQSDLLLPPAIRPYKQFCSSKVSSS
        VAFFSPDERGSHVH+RGFSNHHLFRHVTEHAATVLQYFIGIQ KAALHPLLLWI SYQNLFSK CSKCGRLLS+NKQSDLLLPPAIRPYKQFC+SK+SS 
Subjt:  VAFFSPDERGSHVHSRGFSNHHLFRHVTEHAATVLQYFIGIQEKAALHPLLLWISSYQNLFSKPCSKCGRLLSMNKQSDLLLPPAIRPYKQFCSSKVSSS

Query:  VPIATSKDQKLDSVQAFHIGCFSE
        VP+ + KDQKLDSVQAFHIGCF+E
Subjt:  VPIATSKDQKLDSVQAFHIGCFSE

XP_023005694.1 mediator of RNA polymerase II transcription subunit 27 [Cucurbita maxima]

8.2e-211

88.92

Show/hide

Query:  MRQTPQQQPPQGQTATVSPSIAPPQYSGEEEEGPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVG
        MRQT  Q P QG TATVSP+      SG  EE PPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVG
Subjt:  MRQTPQQQPPQGQTATVSPSIAPPQYSGEEEEGPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVG

Query:  KQLEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNIEPVLKKPRFSHGVTNIKHEE
        KQLEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLD+ENGSN+EP  KKP FSHGVT++K EE
Subjt:  KQLEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNIEPVLKKPRFSHGVTNIKHEE

Query:  VNDSKSLSDILACMEKEVPDLKIFTYERLDWLKQASALASQANENSIGAMKEHNYHSPRMSPRSLGATPMDKTAVIELIIPSVFRAVVSLHPVGSVEPDA
        +NDS SLSDIL CMEKEVPDLKIFTYERLDWLKQAS L SQANENSIG +KEHNYHSPRMSPRSL AT  DK AVIELIIPSVFRAVVSLHPVGSVEPDA
Subjt:  VNDSKSLSDILACMEKEVPDLKIFTYERLDWLKQASALASQANENSIGAMKEHNYHSPRMSPRSLGATPMDKTAVIELIIPSVFRAVVSLHPVGSVEPDA

Query:  VAFFSPDERGSHVHSRGFSNHHLFRHVTEHAATVLQYFIGIQEKAALHPLLLWISSYQNLFSKPCSKCGRLLSMNKQSDLLLPPAIRPYKQFCSSKVSSS
        VAFFSPDERGSHVH+RGFSNHHLFRHVTEHAATVLQYFIGIQ KAALHPLLLWI SYQNLFSK CSKCGRLLS+NKQSDLLLPPAIRPYKQFC+SK+SS+
Subjt:  VAFFSPDERGSHVHSRGFSNHHLFRHVTEHAATVLQYFIGIQEKAALHPLLLWISSYQNLFSKPCSKCGRLLSMNKQSDLLLPPAIRPYKQFCSSKVSSS

Query:  VPIATSKDQKLDSVQAFHIGCFSE
        VP+ + KDQKLDSVQAFHIGCF+E
Subjt:  VPIATSKDQKLDSVQAFHIGCFSE

XP_023539656.1 mediator of RNA polymerase II transcription subunit 27 [Cucurbita pepo subsp. pepo]

1.9e-212

89.62

Show/hide

Query:  MRQTPQQQPPQGQTATVSPSIAPPQYSGEEEEGPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVG
        MRQT  Q P QG TATVSP+      SG  EE PPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVG
Subjt:  MRQTPQQQPPQGQTATVSPSIAPPQYSGEEEEGPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVG

Query:  KQLEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNIEPVLKKPRFSHGVTNIKHEE
        KQLEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNIEP  KKP FSHGVT++K EE
Subjt:  KQLEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNIEPVLKKPRFSHGVTNIKHEE

Query:  VNDSKSLSDILACMEKEVPDLKIFTYERLDWLKQASALASQANENSIGAMKEHNYHSPRMSPRSLGATPMDKTAVIELIIPSVFRAVVSLHPVGSVEPDA
        +NDS SLSDIL C+EKEVPDLKIFTYERLDWLKQASAL+SQANENSIGA+KEHNYHSPRMSPRSL AT  DK AVIELIIPSVFRAVVSLHPVGSVEPDA
Subjt:  VNDSKSLSDILACMEKEVPDLKIFTYERLDWLKQASALASQANENSIGAMKEHNYHSPRMSPRSLGATPMDKTAVIELIIPSVFRAVVSLHPVGSVEPDA

Query:  VAFFSPDERGSHVHSRGFSNHHLFRHVTEHAATVLQYFIGIQEKAALHPLLLWISSYQNLFSKPCSKCGRLLSMNKQSDLLLPPAIRPYKQFCSSKVSSS
        VAFFSPDERGSHVH+RGFSNHHLFRHVTEHAATVLQYFIGIQ KAALHPLLLWI SYQNLFSK CSKCGRLLS+NKQSDLLLPPAIRPYKQFC+SK+SS+
Subjt:  VAFFSPDERGSHVHSRGFSNHHLFRHVTEHAATVLQYFIGIQEKAALHPLLLWISSYQNLFSKPCSKCGRLLSMNKQSDLLLPPAIRPYKQFCSSKVSSS

Query:  VPIATSKDQKLDSVQAFHIGCFSE
        VP+ + KDQKLDSVQAFHIGCF+E
Subjt:  VPIATSKDQKLDSVQAFHIGCFSE

XP_038904949.1 mediator of RNA polymerase II transcription subunit 27 [Benincasa hispida]

5.9e-209

87.71

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Query:  MRQTPQQQPPQGQTATVSPSIAPPQYSGEEEEGPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVG
        MRQT  QQP QGQTATVSP+ APP      ++ PPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVG
Subjt:  MRQTPQQQPPQGQTATVSPSIAPPQYSGEEEEGPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVG

Query:  KQLEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNIEPVLKKPRFSHGVTNIKHEE
        KQLEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHL+DENGSN EP LKKP FSHGVT++K  E
Subjt:  KQLEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNIEPVLKKPRFSHGVTNIKHEE

Query:  VNDSKSLSDILACMEKEVPDLKIFTYERLDWLKQASALASQANENSIGAMKEHNYHSPRMSPRSLGATPMDKTAVIELIIPSVFRAVVSLHPVGSVEPDA
        +NDS+SLS+IL CMEKEVP+LKIFTYERLDWLKQASAL SQANENSIG +KEH+YHSPRMSP SLGATP+DK  VIEL+IPSVFRAVVSLHPVGSVEPDA
Subjt:  VNDSKSLSDILACMEKEVPDLKIFTYERLDWLKQASALASQANENSIGAMKEHNYHSPRMSPRSLGATPMDKTAVIELIIPSVFRAVVSLHPVGSVEPDA

Query:  VAFFSPDERGSHVHSRGFSNHHLFRHVTEHAATVLQYFIGIQEKAALHPLLLWISSYQNLFSKPCSKCGRLLSMNKQSDLLLPPAIRPYKQFCSSKVSSS
        VAFFSPDERGSHVH+RGFSNHHLFRHVTEHAATVLQYF+G Q KAAL+PLLLWI SYQNLFSK CSKCG+LLS+NKQSDLLLPPA+RPYKQFC+SK SSS
Subjt:  VAFFSPDERGSHVHSRGFSNHHLFRHVTEHAATVLQYFIGIQEKAALHPLLLWISSYQNLFSKPCSKCGRLLSMNKQSDLLLPPAIRPYKQFCSSKVSSS

Query:  VPIATSKDQKLDSVQAFHIGCFS
        VPI + KDQKLDSVQAFHI CFS
Subjt:  VPIATSKDQKLDSVQAFHIGCFS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LGT1 Uncharacterized protein

6.8e-203

86.84

Show/hide

Query:  QQPPQGQTATVSPSIAPPQYSGEEEEGPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQLEES
        QQP QGQTATVSPS   P      ++ PPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQS+KPLHLFQKEDASMRQHLLDLRAVGKQLEES
Subjt:  QQPPQGQTATVSPSIAPPQYSGEEEEGPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQLEES

Query:  GVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNIEPVLKKPRFSHGVTNIKHEEVNDSKS
        GVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHL+DEN SN EP LKKP FSHGVT++K  E+ DS+S
Subjt:  GVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNIEPVLKKPRFSHGVTNIKHEEVNDSKS

Query:  LSDILACMEKEVPDLKIFTYERLDWLKQASALASQANENSIGAMKEHNYHSPRMSPRSLGATPMDKTAVIELIIPSVFRAVVSLHPVGSVEPDAVAFFSP
        LSDIL+CMEKEVP+LKIFTYERLDWLKQASAL SQANENSIGA+KEH+YHSPRMSP +LGATP DK  VIELIIPSVFRAVVSLHPVGSVEPDA+AFFSP
Subjt:  LSDILACMEKEVPDLKIFTYERLDWLKQASALASQANENSIGAMKEHNYHSPRMSPRSLGATPMDKTAVIELIIPSVFRAVVSLHPVGSVEPDAVAFFSP

Query:  DERGSHVHSRGFSNHHLFRHVTEHAATVLQYFIGIQEKAALHPLLLWISSYQNLFSKPCSKCGRLLSMNKQSDLLLPPAIRPYKQFCSSKVSSSVPIATS
        DERGSHVH+RGFSN+HLFRHVTEHAATVLQYF+G Q KAAL+PLLLWI SYQNLFSK CSKCGR LS+NKQSDLLLPPA+RPYKQFC+SK SS VPI + 
Subjt:  DERGSHVHSRGFSNHHLFRHVTEHAATVLQYFIGIQEKAALHPLLLWISSYQNLFSKPCSKCGRLLSMNKQSDLLLPPAIRPYKQFCSSKVSSSVPIATS

Query:  KDQKLDSVQAFHIGCFSE
        KDQKLDSVQAFHI CFSE
Subjt:  KDQKLDSVQAFHIGCFSE

A0A1S3B7L6 mediator of RNA polymerase II transcription subunit 27

1.3e-201

85.65

Show/hide

Query:  QQPPQGQTATVSPSIAPPQYSGEEEEGPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQLEES
        QQP QGQTATVSP+   P      ++ PPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQS+KPLHLFQKEDASMRQHLLDLRAVGKQLEES
Subjt:  QQPPQGQTATVSPSIAPPQYSGEEEEGPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQLEES

Query:  GVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNIEPVLKKPRFSHGVTNIKHEEVNDSKS
        GVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHL+DEN SN EP LKKP FSHGVT++K  E+ DS+S
Subjt:  GVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNIEPVLKKPRFSHGVTNIKHEEVNDSKS

Query:  LSDILACMEKEVPDLKIFTYERLDWLKQASALASQANENSIGAMKEHNYHSPRMSPRSLGATPMDKTAVIELIIPSVFRAVVSLHPVGSVEPDAVAFFSP
        LSDIL+C+EKEVP+LKIFTYERLDWLKQASAL SQANENSIGA+KEH+YHSPRMSP +LGATP DK  VIELIIPSVFRAVVSLHP+GSVEPDA+AFFSP
Subjt:  LSDILACMEKEVPDLKIFTYERLDWLKQASALASQANENSIGAMKEHNYHSPRMSPRSLGATPMDKTAVIELIIPSVFRAVVSLHPVGSVEPDAVAFFSP

Query:  DERGSHVHSRGFSNHHLFRHVTEHAATVLQYFIGIQEKAALHPLLLWISSYQNLFSKPCSKCGRLLSMNKQSDLLLPPAIRPYKQFCSSKVSSSVPIATS
        DERGSHVH+RGFSN+H+FRHVTEHAATVLQYF+G Q KAAL+PLLLWI SYQNLFSK CSKCGR LS+NKQSDLLLPP +RPYKQFC+SK SS+VPI + 
Subjt:  DERGSHVHSRGFSNHHLFRHVTEHAATVLQYFIGIQEKAALHPLLLWISSYQNLFSKPCSKCGRLLSMNKQSDLLLPPAIRPYKQFCSSKVSSSVPIATS

Query:  KDQKLDSVQAFHIGCFSE
        KDQKLDSVQAFHI CFSE
Subjt:  KDQKLDSVQAFHIGCFSE

A0A6J1DC62 mediator of RNA polymerase II transcription subunit 27

6.1e-204

85.45

Show/hide

Query:  MRQTPQQQPPQGQTATVSPSIAPPQYSGEEEEGPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVG
        MRQT  QQP QGQTATVSP+ A P   G  EE PPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTA PHQSTKPLHLFQKED SMRQHL DLRAVG
Subjt:  MRQTPQQQPPQGQTATVSPSIAPPQYSGEEEEGPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVG

Query:  KQLEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNIEPVLKKPRFSHGVTNIKHEE
        KQLEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDE+  N+EP LKKP FSHGVT IK +E
Subjt:  KQLEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNIEPVLKKPRFSHGVTNIKHEE

Query:  VNDSKSLSDILACMEKEVPDLKIFTYERLDWLKQASALASQANENSIGAMKEHNYHSPRMSPRSLGATPMDKTAVIELIIPSVFRAVVSLHPVGSVEPDA
        +N+ ++LSDIL CMEKEVPDLKIFTYERLDWLKQA AL+SQAN+NSIGA+KEHNYHSPRM P SL A+  DK +VIELIIPSVFRAVVSLHPVGSVEPDA
Subjt:  VNDSKSLSDILACMEKEVPDLKIFTYERLDWLKQASALASQANENSIGAMKEHNYHSPRMSPRSLGATPMDKTAVIELIIPSVFRAVVSLHPVGSVEPDA

Query:  VAFFSPDERGSHVHSRGFSNHHLFRHVTEHAATVLQYFIGIQEKAALHPLLLWISSYQNLFSKPCSKCGRLLSMNKQSDLLLPPAIRPYKQFCSSKVSSS
        VAFF+PDERGS+VH+RGFS HHLFRHVTEHAATVLQYF+GIQEKAAL+PLLLWI SYQNLFSK CSKCGRLLS+NKQSDLLLPPAIRPYKQFC+S+V S+
Subjt:  VAFFSPDERGSHVHSRGFSNHHLFRHVTEHAATVLQYFIGIQEKAALHPLLLWISSYQNLFSKPCSKCGRLLSMNKQSDLLLPPAIRPYKQFCSSKVSSS

Query:  VPIATSKDQKLDSVQAFHIGCFSEGL
        VPI++ KDQ+ D VQAFHIGCFSE L
Subjt:  VPIATSKDQKLDSVQAFHIGCFSEGL

A0A6J1FP59 mediator of RNA polymerase II transcription subunit 27

1.0e-211

89.39

Show/hide

Query:  MRQTPQQQPPQGQTATVSPSIAPPQYSGEEEEGPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVG
        MRQT  Q P QG TATVSP+      SG  EE PPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVG
Subjt:  MRQTPQQQPPQGQTATVSPSIAPPQYSGEEEEGPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVG

Query:  KQLEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNIEPVLKKPRFSHGVTNIKHEE
        KQLEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLD+ENGSN+EP  KKP FSHGVT++K EE
Subjt:  KQLEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNIEPVLKKPRFSHGVTNIKHEE

Query:  VNDSKSLSDILACMEKEVPDLKIFTYERLDWLKQASALASQANENSIGAMKEHNYHSPRMSPRSLGATPMDKTAVIELIIPSVFRAVVSLHPVGSVEPDA
        +NDS SLSDIL CMEKEVPDLKIFTYERLDWLKQASAL SQANENSIGA+KEHNYHSPRMSPRSL AT  DK AVIELIIPSVFRAVVSLHPVGSVEPDA
Subjt:  VNDSKSLSDILACMEKEVPDLKIFTYERLDWLKQASALASQANENSIGAMKEHNYHSPRMSPRSLGATPMDKTAVIELIIPSVFRAVVSLHPVGSVEPDA

Query:  VAFFSPDERGSHVHSRGFSNHHLFRHVTEHAATVLQYFIGIQEKAALHPLLLWISSYQNLFSKPCSKCGRLLSMNKQSDLLLPPAIRPYKQFCSSKVSSS
        VAFFSPDERGSHVH+RGFSNHHLFRHVTEHAATVLQYFIGIQ KAALHPLLLWI SYQNLFSK CSKCGRLLS+NKQSDLLLPPAIRPYKQFC+SK+SS 
Subjt:  VAFFSPDERGSHVHSRGFSNHHLFRHVTEHAATVLQYFIGIQEKAALHPLLLWISSYQNLFSKPCSKCGRLLSMNKQSDLLLPPAIRPYKQFCSSKVSSS

Query:  VPIATSKDQKLDSVQAFHIGCFSE
        VP+ + KDQKLDSVQAFHIGCF+E
Subjt:  VPIATSKDQKLDSVQAFHIGCFSE

A0A6J1KZZ9 mediator of RNA polymerase II transcription subunit 27

4.0e-211

88.92

Show/hide

Query:  MRQTPQQQPPQGQTATVSPSIAPPQYSGEEEEGPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVG
        MRQT  Q P QG TATVSP+      SG  EE PPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVG
Subjt:  MRQTPQQQPPQGQTATVSPSIAPPQYSGEEEEGPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVG

Query:  KQLEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNIEPVLKKPRFSHGVTNIKHEE
        KQLEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLD+ENGSN+EP  KKP FSHGVT++K EE
Subjt:  KQLEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNIEPVLKKPRFSHGVTNIKHEE

Query:  VNDSKSLSDILACMEKEVPDLKIFTYERLDWLKQASALASQANENSIGAMKEHNYHSPRMSPRSLGATPMDKTAVIELIIPSVFRAVVSLHPVGSVEPDA
        +NDS SLSDIL CMEKEVPDLKIFTYERLDWLKQAS L SQANENSIG +KEHNYHSPRMSPRSL AT  DK AVIELIIPSVFRAVVSLHPVGSVEPDA
Subjt:  VNDSKSLSDILACMEKEVPDLKIFTYERLDWLKQASALASQANENSIGAMKEHNYHSPRMSPRSLGATPMDKTAVIELIIPSVFRAVVSLHPVGSVEPDA

Query:  VAFFSPDERGSHVHSRGFSNHHLFRHVTEHAATVLQYFIGIQEKAALHPLLLWISSYQNLFSKPCSKCGRLLSMNKQSDLLLPPAIRPYKQFCSSKVSSS
        VAFFSPDERGSHVH+RGFSNHHLFRHVTEHAATVLQYFIGIQ KAALHPLLLWI SYQNLFSK CSKCGRLLS+NKQSDLLLPPAIRPYKQFC+SK+SS+
Subjt:  VAFFSPDERGSHVHSRGFSNHHLFRHVTEHAATVLQYFIGIQEKAALHPLLLWISSYQNLFSKPCSKCGRLLSMNKQSDLLLPPAIRPYKQFCSSKVSSS

Query:  VPIATSKDQKLDSVQAFHIGCFSE
        VP+ + KDQKLDSVQAFHIGCF+E
Subjt:  VPIATSKDQKLDSVQAFHIGCFSE

SwissProt top hits

e value

%identity

Alignment

Q8RWM3 Mediator of RNA polymerase II transcription subunit 27

7.9e-124

59.95

Show/hide

Query:  EEEGPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMPLVCP
        E + PPKQVA AM+RL  AAR+IADIRLGADR+LEA+ V +QP  +  PL LF +EDASMRQHL DLR +GK+LEESGVL+ESL SRSNSWGLHMPLVCP
Subjt:  EEEGPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMPLVCP

Query:  DGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNIEPVLKKPRFSHGVTNIKHEEVNDSKSLSDILACMEKEVPDLKIFTYERL
        DGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPH+DD  G  +EP  KK R SH +     EE  D K+L DI + +EK VP +K+ TY RL
Subjt:  DGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNIEPVLKKPRFSHGVTNIKHEEVNDSKSLSDILACMEKEVPDLKIFTYERL

Query:  DWLKQASALASQANENSIGAMKEHNYHSPRMSPRSLGATPMDKTAVIELIIPSVFRAVVSLHPVGSVEPDAVAFFSPDERGSHVHSRGFSNHHLFRHVTE
        +WLK+A++L    +++   A K     S ++    L    +DK AVIEL  PS+FRA+VSL P GSV+PDAVAFFSPDE GS++H+RGFS +H+++H+TE
Subjt:  DWLKQASALASQANENSIGAMKEHNYHSPRMSPRSLGATPMDKTAVIELIIPSVFRAVVSLHPVGSVEPDAVAFFSPDERGSHVHSRGFSNHHLFRHVTE

Query:  HAATVLQYFIGIQEKAALHPLLLWISSYQNLFSKPCSKCGRLLSMNKQSDLLLPPAIRPYKQFCSSKVSSSVPIATSKDQKLDSVQAFHIGC
        HAAT LQYF+G     AL+ LLLWI S++++FSKPC+KCGRLL+M+K+S L+LPP  R Y++         +P+A +    LD  +A+H  C
Subjt:  HAATVLQYFIGIQEKAALHPLLLWISSYQNLFSKPCSKCGRLLSMNKQSDLLLPPAIRPYKQFCSSKVSSSVPIATSKDQKLDSVQAFHIGC

Arabidopsis top hits

e value

%identity

Alignment

AT3G09180.1 CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med27 (InterPro:IPR021627); Has 112 Blast hits to 112 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 79; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).

5.6e-125

59.95

Show/hide

Query:  EEEGPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMPLVCP
        E + PPKQVA AM+RL  AAR+IADIRLGADR+LEA+ V +QP  +  PL LF +EDASMRQHL DLR +GK+LEESGVL+ESL SRSNSWGLHMPLVCP
Subjt:  EEEGPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMPLVCP

Query:  DGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNIEPVLKKPRFSHGVTNIKHEEVNDSKSLSDILACMEKEVPDLKIFTYERL
        DGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPH+DD  G  +EP  KK R SH +     EE  D K+L DI + +EK VP +K+ TY RL
Subjt:  DGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNIEPVLKKPRFSHGVTNIKHEEVNDSKSLSDILACMEKEVPDLKIFTYERL

Query:  DWLKQASALASQANENSIGAMKEHNYHSPRMSPRSLGATPMDKTAVIELIIPSVFRAVVSLHPVGSVEPDAVAFFSPDERGSHVHSRGFSNHHLFRHVTE
        +WLK+A++L    +++   A K     S ++    L    +DK AVIEL  PS+FRA+VSL P GSV+PDAVAFFSPDE GS++H+RGFS +H+++H+TE
Subjt:  DWLKQASALASQANENSIGAMKEHNYHSPRMSPRSLGATPMDKTAVIELIIPSVFRAVVSLHPVGSVEPDAVAFFSPDERGSHVHSRGFSNHHLFRHVTE

Query:  HAATVLQYFIGIQEKAALHPLLLWISSYQNLFSKPCSKCGRLLSMNKQSDLLLPPAIRPYKQFCSSKVSSSVPIATSKDQKLDSVQAFHIGC
        HAAT LQYF+G     AL+ LLLWI S++++FSKPC+KCGRLL+M+K+S L+LPP  R Y++         +P+A +    LD  +A+H  C
Subjt:  HAATVLQYFIGIQEKAALHPLLLWISSYQNLFSKPCSKCGRLLSMNKQSDLLLPPAIRPYKQFCSSKVSSSVPIATSKDQKLDSVQAFHIGC

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCGACAGACGCCGCAGCAGCAGCCACCGCAGGGCCAGACTGCGACGGTGAGCCCTTCCATTGCGCCGCCGCAATATTCCGGCGAGGAGGAGGAGGGGCCGCCGAAGCA
GGTCGCCCTCGCCATGGACAGACTCGGCCACGCCGCTCGCCTCATCGCCGACATCAGGCTCGGCGCCGATCGCCTTCTCGAAGCCCTCTGCGTCACCGCCCAACCTCACC
AGAGCACCAAGCCTCTCCACTTGTTCCAGAAAGAAGACGCTTCCATGCGCCAACACCTTCTTGATCTTCGTGCAGTCGGAAAGCAGCTGGAAGAGTCTGGTGTTCTTAGT
GAATCTCTTCTTTCGCGAAGTAATTCTTGGGGTCTACATATGCCTTTAGTGTGTCCCGATGGCGCAGTGGTTGCTTATGCTTGGAAACGTCAACTAGCTGGCCAGGCGGG
TGCATCTGCAGTCGACCGAACCAGGTTAGCTCTAAAGGCCTTCACTGACCAGAAAAGACGGTTTTTCCCTCATCTTGATGATGAAAATGGGTCAAATATTGAGCCTGTTC
TGAAGAAGCCTCGTTTTTCTCATGGAGTGACAAATATTAAACATGAGGAGGTTAATGATTCTAAATCACTCTCTGATATTCTAGCATGCATGGAAAAGGAAGTGCCCGAC
CTTAAGATTTTCACGTATGAGCGATTGGACTGGTTGAAACAAGCTTCAGCACTTGCCTCGCAAGCAAATGAGAATTCCATAGGAGCAATGAAAGAACATAACTATCATAG
TCCTAGGATGAGCCCCAGATCACTTGGTGCTACTCCCATGGATAAAACTGCTGTAATTGAGTTGATCATCCCTTCTGTCTTTAGAGCCGTAGTATCACTGCATCCAGTTG
GTTCTGTTGAACCAGATGCTGTAGCTTTCTTTTCTCCTGATGAGAGAGGCAGCCATGTACATTCCAGGGGTTTTTCAAATCATCATTTGTTTAGACATGTGACGGAGCAT
GCTGCCACTGTGCTGCAGTATTTTATTGGAATTCAAGAAAAAGCAGCTCTACATCCTCTATTGCTTTGGATCAGCAGCTATCAAAATTTATTTTCAAAACCTTGTAGTAA
ATGTGGACGGCTGCTATCAATGAACAAACAATCAGATTTACTATTACCTCCTGCAATTCGCCCATACAAGCAGTTTTGTTCATCGAAAGTTTCATCATCTGTGCCCATAG
CCACATCGAAAGACCAGAAGTTGGATTCTGTTCAGGCTTTTCACATTGGTTGCTTCTCAGAAGGACTATAG

mRNA sequence

Show/hide mRNA sequence

GGAATTGTGAAATTAGCAGTCGTCTTGGTCATACCACCGCAAGGGGCTTTTTGGGGGAAAGGAAATCGAAAGCAGAGTAAATGCGACAGACGCCGCAGCAGCAGCCACCG
CAGGGCCAGACTGCGACGGTGAGCCCTTCCATTGCGCCGCCGCAATATTCCGGCGAGGAGGAGGAGGGGCCGCCGAAGCAGGTCGCCCTCGCCATGGACAGACTCGGCCA
CGCCGCTCGCCTCATCGCCGACATCAGGCTCGGCGCCGATCGCCTTCTCGAAGCCCTCTGCGTCACCGCCCAACCTCACCAGAGCACCAAGCCTCTCCACTTGTTCCAGA
AAGAAGACGCTTCCATGCGCCAACACCTTCTTGATCTTCGTGCAGTCGGAAAGCAGCTGGAAGAGTCTGGTGTTCTTAGTGAATCTCTTCTTTCGCGAAGTAATTCTTGG
GGTCTACATATGCCTTTAGTGTGTCCCGATGGCGCAGTGGTTGCTTATGCTTGGAAACGTCAACTAGCTGGCCAGGCGGGTGCATCTGCAGTCGACCGAACCAGGTTAGC
TCTAAAGGCCTTCACTGACCAGAAAAGACGGTTTTTCCCTCATCTTGATGATGAAAATGGGTCAAATATTGAGCCTGTTCTGAAGAAGCCTCGTTTTTCTCATGGAGTGA
CAAATATTAAACATGAGGAGGTTAATGATTCTAAATCACTCTCTGATATTCTAGCATGCATGGAAAAGGAAGTGCCCGACCTTAAGATTTTCACGTATGAGCGATTGGAC
TGGTTGAAACAAGCTTCAGCACTTGCCTCGCAAGCAAATGAGAATTCCATAGGAGCAATGAAAGAACATAACTATCATAGTCCTAGGATGAGCCCCAGATCACTTGGTGC
TACTCCCATGGATAAAACTGCTGTAATTGAGTTGATCATCCCTTCTGTCTTTAGAGCCGTAGTATCACTGCATCCAGTTGGTTCTGTTGAACCAGATGCTGTAGCTTTCT
TTTCTCCTGATGAGAGAGGCAGCCATGTACATTCCAGGGGTTTTTCAAATCATCATTTGTTTAGACATGTGACGGAGCATGCTGCCACTGTGCTGCAGTATTTTATTGGA
ATTCAAGAAAAAGCAGCTCTACATCCTCTATTGCTTTGGATCAGCAGCTATCAAAATTTATTTTCAAAACCTTGTAGTAAATGTGGACGGCTGCTATCAATGAACAAACA
ATCAGATTTACTATTACCTCCTGCAATTCGCCCATACAAGCAGTTTTGTTCATCGAAAGTTTCATCATCTGTGCCCATAGCCACATCGAAAGACCAGAAGTTGGATTCTG
TTCAGGCTTTTCACATTGGTTGCTTCTCAGAAGGACTATAGTTACACCTAGCTATACAGGTGACGTTCTTGGGAAAAAAAACTCATTTGTAAATTGTCGTGCAATCTGAG
GAGACATCCAATTAGATTGTAATGCAGTGTTGCAAGTACATGACAAAGAGTGATATTCAGATTATTCATAGGAGCTAATCGTGATGCCAAAAAAACCGTCGAGTTTCTTA
CGTGGTTAGTTCCTGTGAGCTGAAGTAGCTTGCGATTGTCGAGTCAATGTCATTTGCTTTGATTTGAGCAATGGCTAGTTCCTTCCCCATCTCTTTAGAAGATATGTTTG
AATTTTGAAACATTTGTATCTTGCCCCTTCAGATTCAAGTTAGAATGCCAGCTTTTCATTAGTAACTTACCAATAAGTTTGTTCTTGGGGGGCAAGGCCATATAATCAAG
TGCTCCATGAAGATTGCAATTACTTCATCTAATGTGTATCTTGTACTCTATCTTTGCTGTCAATATATTCTTACTGTTTCAGTTAGCAAGAAAATTTGGAAATGGCTCTC
TTCCTTTAAGGACGGGACAATTTGTTTGGAAGGTTGAAGCAGCTTGATTTTACAAGATTCCATCTTTACTACACTTCTACTTGCTGCAGGAGGTCCAGAGGTCCTGTGGC
TATCTCAATTAGTTAACTTCGACTACGAAGTAATTTAATTGATGAAGGTATCGATATGTCGTAAGCTTGAATCTCTATTCTTGTGCTCGAAGGGCTCGGGCATAAGTGTT
GTGATGCTTTTTAAAGCAAATATTCTTCTCAAGTTGTTCCTAGTGCAAATCCTTAAATTTGGATTTTCAATAGGTAATTTTAGTCTAGTTTCTCCTTGTTGTGCTAGTTA
AGTTTAAATTACAAGAGTAGGA

Protein sequence

Show/hide protein sequence

MRQTPQQQPPQGQTATVSPSIAPPQYSGEEEEGPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLS
ESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNIEPVLKKPRFSHGVTNIKHEEVNDSKSLSDILACMEKEVPD
LKIFTYERLDWLKQASALASQANENSIGAMKEHNYHSPRMSPRSLGATPMDKTAVIELIIPSVFRAVVSLHPVGSVEPDAVAFFSPDERGSHVHSRGFSNHHLFRHVTEH
AATVLQYFIGIQEKAALHPLLLWISSYQNLFSKPCSKCGRLLSMNKQSDLLLPPAIRPYKQFCSSKVSSSVPIATSKDQKLDSVQAFHIGCFSEGL

Sed0021278 (gene) of Chayote v1 genome