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Sed0021279 (gene) of Chayote v1 genome

Gene IDSed0021279
OrganismSechium edule (Chayote v1)
DescriptionRING-H2 finger protein ATL18-like
Genome locationLG01:4426897..4427681
RNA-Seq ExpressionSed0021279
SyntenySed0021279
Gene Ontology termsGO:0009987 - cellular process (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6604984.1 RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. sororia]8.2e-4465.38Show/hide
Query:  MLGFVSLDPRMRFALFLLHASLWIPLLRLKDAILAIATVFRLQSLPEMDTSGGGGGDLPVRKYGELRRSDDRSTEEEMCSICLTEFARGDSVCELTNCCH
        MLGF+        A+   +  +WIPLLRLKDAI+   +VFRL  +PE D  G  GG L VR+Y EL+RSDDR+ EEE+CSICL EFARGDSVC L +C H
Subjt:  MLGFVSLDPRMRFALFLLHASLWIPLLRLKDAILAIATVFRLQSLPEMDTSGGGGGDLPVRKYGELRRSDDRSTEEEMCSICLTEFARGDSVCELTNCCH

Query:  VFHSDCIEKWLEKNRFTCPLCRC--FFNIENPRHEKKLFRFLVPDDNPSCLYYFLQ
        VFH DCIEKWLE+NRFTCPLCRC  FFNI N RHE+KL +F+VP DNPSCLYYFLQ
Subjt:  VFHSDCIEKWLEKNRFTCPLCRC--FFNIENPRHEKKLFRFLVPDDNPSCLYYFLQ

KAG7010790.1 RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. argyrosperma]4.5e-5068.83Show/hide
Query:  MLGFVSLDPRMRFALFLLHASLWIPLLRLKDAILAIATVFRLQSLPEMDTSGGGGGDLPVRKYGELRRSDDRSTEEEMCSICLTEFARGDSVCELTNCCH
        MLG + L+ R+  A+   +  +WIPL R+K+AIL IA+VFRL SLPEMD+S   GG L VR+Y EL+RSDDR+ EEEMCSICLTEFAR DSVC+L +C H
Subjt:  MLGFVSLDPRMRFALFLLHASLWIPLLRLKDAILAIATVFRLQSLPEMDTSGGGGGDLPVRKYGELRRSDDRSTEEEMCSICLTEFARGDSVCELTNCCH

Query:  VFHSDCIEKWLEKNRFTCPLCRCFFNIENPRHEKKLFRFLVPDDNPSCLYYFLQ
        VFH DCIEKW E+NRFTCPLCRCFFNIE   HEKKL RF+VP DNPS LYYFLQ
Subjt:  VFHSDCIEKWLEKNRFTCPLCRCFFNIENPRHEKKLFRFLVPDDNPSCLYYFLQ

XP_022944066.1 RING-H2 finger protein ATL18-like [Cucurbita moschata]7.6e-5068.18Show/hide
Query:  MLGFVSLDPRMRFALFLLHASLWIPLLRLKDAILAIATVFRLQSLPEMDTSGGGGGDLPVRKYGELRRSDDRSTEEEMCSICLTEFARGDSVCELTNCCH
        MLG + L+ R+  A+   +  +WIPL R+K+AIL +A+VFRL SLPEMD+S   GG L VR+Y EL+RSDDR+ EEEMCSICLTEFAR DSVC+L +C H
Subjt:  MLGFVSLDPRMRFALFLLHASLWIPLLRLKDAILAIATVFRLQSLPEMDTSGGGGGDLPVRKYGELRRSDDRSTEEEMCSICLTEFARGDSVCELTNCCH

Query:  VFHSDCIEKWLEKNRFTCPLCRCFFNIENPRHEKKLFRFLVPDDNPSCLYYFLQ
        VFH DCIEKW E+NRFTCPLCRCFFNIE   HEKKL RF+VP DNPS LYYFLQ
Subjt:  VFHSDCIEKWLEKNRFTCPLCRCFFNIENPRHEKKLFRFLVPDDNPSCLYYFLQ

XP_022947864.1 E3 ubiquitin-protein ligase ATL41-like, partial [Cucurbita moschata]6.3e-4464.78Show/hide
Query:  LGFVSLDPRMR----FALFLLHASLWIPLLRLKDAILAIATVFRLQSLPEMDTSGGGGGDLPVRKYGELRRSDDRSTEEEMCSICLTEFARGDSVCELTN
        L F+ L  R R     A+   +  +WIPLLRLKDAI+   +VFRL  +PE D  G  GG L VR+Y EL+RSDDR+ EEE+CSICL EFARGDSVC L +
Subjt:  LGFVSLDPRMR----FALFLLHASLWIPLLRLKDAILAIATVFRLQSLPEMDTSGGGGGDLPVRKYGELRRSDDRSTEEEMCSICLTEFARGDSVCELTN

Query:  CCHVFHSDCIEKWLEKNRFTCPLCRC--FFNIENPRHEKKLFRFLVPDDNPSCLYYFLQ
        C HVFH DCIEKWLE+NRFTCPLCRC  FFNI N RHE+KL +F+VP DNPSCLYYFLQ
Subjt:  CCHVFHSDCIEKWLEKNRFTCPLCRC--FFNIENPRHEKKLFRFLVPDDNPSCLYYFLQ

XP_023512248.1 RING-H2 finger protein ATL18-like [Cucurbita pepo subsp. pepo]1.3e-4967.53Show/hide
Query:  MLGFVSLDPRMRFALFLLHASLWIPLLRLKDAILAIATVFRLQSLPEMDTSGGGGGDLPVRKYGELRRSDDRSTEEEMCSICLTEFARGDSVCELTNCCH
        MLG + L+ R+  A+   +  +WIPL R+K+AIL +A+VFRL SLPEMD+S   GG L VR+Y EL+RSDDR+ EEEMCSICLTEFAR DSVC+L +C H
Subjt:  MLGFVSLDPRMRFALFLLHASLWIPLLRLKDAILAIATVFRLQSLPEMDTSGGGGGDLPVRKYGELRRSDDRSTEEEMCSICLTEFARGDSVCELTNCCH

Query:  VFHSDCIEKWLEKNRFTCPLCRCFFNIENPRHEKKLFRFLVPDDNPSCLYYFLQ
        VFH DCIEKW E+NRFTCPLCRCFFNIE   HE+KL RF+VP DNPS LYYFLQ
Subjt:  VFHSDCIEKWLEKNRFTCPLCRCFFNIENPRHEKKLFRFLVPDDNPSCLYYFLQ

TrEMBL top hitse value%identityAlignment
A0A5A7TXY0 RING-H2 finger protein ATL18-like3.5e-3253.21Show/hide
Query:  MLGFVSLDPRMRFALFLLHASLWIPLLRLKDAIL-AIATVFRLQSLPEMDTSGGGGGDLPVRKYGELRRSDDRSTEEEMCSICLTEFARG-DSVCELTNC
        MLG   L   MRF +      LWIPL R+K AIL  +ATVF L S P+  T       + VR Y E    D   + EE+CSICLTEF R  DSVC+L NC
Subjt:  MLGFVSLDPRMRFALFLLHASLWIPLLRLKDAIL-AIATVFRLQSLPEMDTSGGGGGDLPVRKYGELRRSDDRSTEEEMCSICLTEFARG-DSVCELTNC

Query:  CHVFHSDCIEKWLEKNRFTCPLCRCFFNIENPRHEKKLFRFLVPDDNPSCLYYFLQ
         H+FH +CI++W+++NRFTCPLCRCFF  +N + + K +RFLVP DNPS LYYFLQ
Subjt:  CHVFHSDCIEKWLEKNRFTCPLCRCFFNIENPRHEKKLFRFLVPDDNPSCLYYFLQ

A0A6J1CHK3 RING-H2 finger protein ATL642.6e-3559.31Show/hide
Query:  MRFALFLLHASLWIPLLRLKDAILAIATVFRLQSLPEMDTSGGGGGDLPVRKYGELRRSDDRSTEEE-MCSICLTEFARGDSVCELTNCCHVFHSDCIEK
        MR  L  ++  + IPL  LK AIL++ATVFR  S P              R+Y ELRR +D + E+E MCSICLTEFAR DSV EL +C HVFH +CIEK
Subjt:  MRFALFLLHASLWIPLLRLKDAILAIATVFRLQSLPEMDTSGGGGGDLPVRKYGELRRSDDRSTEEE-MCSICLTEFARGDSVCELTNCCHVFHSDCIEK

Query:  WLEKNRFTCPLCRCFFNIENPRHEKKLFRFLVPDDNPSCLYYFLQ
        W+E+N FTCPLCRCFFNIEN R EK   RF++P DNPSCLYYFLQ
Subjt:  WLEKNRFTCPLCRCFFNIENPRHEKKLFRFLVPDDNPSCLYYFLQ

A0A6J1FTE6 RING-H2 finger protein ATL18-like3.7e-5068.18Show/hide
Query:  MLGFVSLDPRMRFALFLLHASLWIPLLRLKDAILAIATVFRLQSLPEMDTSGGGGGDLPVRKYGELRRSDDRSTEEEMCSICLTEFARGDSVCELTNCCH
        MLG + L+ R+  A+   +  +WIPL R+K+AIL +A+VFRL SLPEMD+S   GG L VR+Y EL+RSDDR+ EEEMCSICLTEFAR DSVC+L +C H
Subjt:  MLGFVSLDPRMRFALFLLHASLWIPLLRLKDAILAIATVFRLQSLPEMDTSGGGGGDLPVRKYGELRRSDDRSTEEEMCSICLTEFARGDSVCELTNCCH

Query:  VFHSDCIEKWLEKNRFTCPLCRCFFNIENPRHEKKLFRFLVPDDNPSCLYYFLQ
        VFH DCIEKW E+NRFTCPLCRCFFNIE   HEKKL RF+VP DNPS LYYFLQ
Subjt:  VFHSDCIEKWLEKNRFTCPLCRCFFNIENPRHEKKLFRFLVPDDNPSCLYYFLQ

A0A6J1G855 E3 ubiquitin-protein ligase ATL41-like3.0e-4464.78Show/hide
Query:  LGFVSLDPRMR----FALFLLHASLWIPLLRLKDAILAIATVFRLQSLPEMDTSGGGGGDLPVRKYGELRRSDDRSTEEEMCSICLTEFARGDSVCELTN
        L F+ L  R R     A+   +  +WIPLLRLKDAI+   +VFRL  +PE D  G  GG L VR+Y EL+RSDDR+ EEE+CSICL EFARGDSVC L +
Subjt:  LGFVSLDPRMR----FALFLLHASLWIPLLRLKDAILAIATVFRLQSLPEMDTSGGGGGDLPVRKYGELRRSDDRSTEEEMCSICLTEFARGDSVCELTN

Query:  CCHVFHSDCIEKWLEKNRFTCPLCRC--FFNIENPRHEKKLFRFLVPDDNPSCLYYFLQ
        C HVFH DCIEKWLE+NRFTCPLCRC  FFNI N RHE+KL +F+VP DNPSCLYYFLQ
Subjt:  CCHVFHSDCIEKWLEKNRFTCPLCRC--FFNIENPRHEKKLFRFLVPDDNPSCLYYFLQ

A0A6J1I5X8 RING-H2 finger protein ATL182.4e-4169.63Show/hide
Query:  LWIPLLRLKDAILAIATVFRLQSLPEMDTSGGGGGDLPVRKYGELRRSDDRSTEEEMCSICLTEFARGDSVCELTNCCHVFHSDCIEKWLEKNRFTCPLC
        +WIPLLRLKDAI+   +VFRL  +PE D  G  GG L VR+Y EL+R  DR+ EEE+CSICL EFARGDSVC L +C HVFH  CIEKWLE+NRFTCPLC
Subjt:  LWIPLLRLKDAILAIATVFRLQSLPEMDTSGGGGGDLPVRKYGELRRSDDRSTEEEMCSICLTEFARGDSVCELTNCCHVFHSDCIEKWLEKNRFTCPLC

Query:  RC--FFNIENPRHEKKLFRFLVPDDNPSCLYYFLQ
        RC  FFNI N RHE+KL +F+VP DNPSCLYYFLQ
Subjt:  RC--FFNIENPRHEKKLFRFLVPDDNPSCLYYFLQ

SwissProt top hitse value%identityAlignment
P93823 RING-H2 finger protein ATL14.7e-1040.54Show/hide
Query:  LPVRKYGE---LRRSDDRSTEEEMCSICLTEFARGDSVCELTNCCHVFHSDCIEKWLEKNRFTCPLCRCFFNIE
        +PV K+ +   +   +D+S   + CS+CL EF   + +  + NCCHVFH DCI+ WL+ N   CPLCR   + E
Subjt:  LPVRKYGE---LRRSDDRSTEEEMCSICLTEFARGDSVCELTNCCHVFHSDCIEKWLEKNRFTCPLCRCFFNIE

Q8H7N9 E3 ubiquitin-protein ligase Os03g01882005.2e-0943.75Show/hide
Query:  PVRKYGELRRSDDRSTEEEMCSICLTEFARGDSVCELTNCCHVFHSDCIEKWLEKNRFTCPLCR
        P   YG+++      +    C++CL EFA  D +  L  CCHVFH DCI+ WL     TCPLCR
Subjt:  PVRKYGELRRSDDRSTEEEMCSICLTEFARGDSVCELTNCCHVFHSDCIEKWLEKNRFTCPLCR

Q9LY41 E3 ubiquitin-protein ligase ATL41.2e-0843.94Show/hide
Query:  LPVRKYGEL-RRSDDRSTEEEMCSICLTEFARGDSVCELTNCCHVFHSDCIEKWLEKNRFTCPLCR
        LP+ K+  + RRS   ++ +  C++CL++F   D +  L  CCH FH+DCI+ WL  N+ TCPLCR
Subjt:  LPVRKYGEL-RRSDDRSTEEEMCSICLTEFARGDSVCELTNCCHVFHSDCIEKWLEKNRFTCPLCR

Q9SZL4 RING-H2 finger protein ATL181.6e-1049.18Show/hide
Query:  DRSTEEEM-CSICLTEFARGDSVCELTNCCHVFHSDCIEKWLEKNRFTCPLCRCFFNIENP
        D+  EEE+ C ICL EF   D+V  L  C H+FH +CIE WL +   TCPLCR F     P
Subjt:  DRSTEEEM-CSICLTEFARGDSVCELTNCCHVFHSDCIEKWLEKNRFTCPLCRCFFNIENP

Q9XF92 Brassinosteroid-responsive RING protein 13.0e-0941.18Show/hide
Query:  LPVRKYGELRRSDDRSTEEEMCSICLTEFARGDSVCELTNCCHVFHSDCIEKWLEKNRFTCPLCRCFF
        LPV K+ EL  S +   E   C++CL EF     +  L NC H+FH  C+++W++ ++ TCPLCR  F
Subjt:  LPVRKYGELRRSDDRSTEEEMCSICLTEFARGDSVCELTNCCHVFHSDCIEKWLEKNRFTCPLCRCFF

Arabidopsis top hitse value%identityAlignment
AT1G04360.1 RING/U-box superfamily protein3.3e-1140.54Show/hide
Query:  LPVRKYGE---LRRSDDRSTEEEMCSICLTEFARGDSVCELTNCCHVFHSDCIEKWLEKNRFTCPLCRCFFNIE
        +PV K+ +   +   +D+S   + CS+CL EF   + +  + NCCHVFH DCI+ WL+ N   CPLCR   + E
Subjt:  LPVRKYGE---LRRSDDRSTEEEMCSICLTEFARGDSVCELTNCCHVFHSDCIEKWLEKNRFTCPLCRCFFNIE

AT1G63840.1 RING/U-box superfamily protein3.3e-1140.28Show/hide
Query:  GGDLPVRKYGELRRSDDRSTEEEMCSICLTEFARGDSVCELTNCCHVFHSDCIEKW-LEKNRFTCPLCRCFF
        G  LPV ++ ++ R      E E C++CL +F   D +  LTNC H+FH  C+++W +  N+ TCPLCR  F
Subjt:  GGDLPVRKYGELRRSDDRSTEEEMCSICLTEFARGDSVCELTNCCHVFHSDCIEKW-LEKNRFTCPLCRCFF

AT4G00305.1 RING/U-box superfamily protein4.4e-1143.08Show/hide
Query:  LPVRKYGELRRSDDRSTEEEMCSICLTEFARGDSVCELTNCCHVFHSDCIEKWLEKNRFTCPLCR
        LP  K+ ++     R    E C IC  EF  GD V  L NC HV+H  CI++W++ ++ TCPLCR
Subjt:  LPVRKYGELRRSDDRSTEEEMCSICLTEFARGDSVCELTNCCHVFHSDCIEKWLEKNRFTCPLCR

AT4G38140.1 RING/U-box superfamily protein1.1e-1149.18Show/hide
Query:  DRSTEEEM-CSICLTEFARGDSVCELTNCCHVFHSDCIEKWLEKNRFTCPLCRCFFNIENP
        D+  EEE+ C ICL EF   D+V  L  C H+FH +CIE WL +   TCPLCR F     P
Subjt:  DRSTEEEM-CSICLTEFARGDSVCELTNCCHVFHSDCIEKWLEKNRFTCPLCRCFFNIENP

AT5G41400.1 RING/U-box superfamily protein5.7e-1143.06Show/hide
Query:  GGDLPVRKYGELRRSDDRSTEEEMCSICLTEFARGDSVCELTNCCHVFHSDCIEKW-LEKNRFTCPLCRCFF
        G  LPV ++ EL R    S   + C++CL EF   D +  LTNC H+FH  C+++W +  N+ TCPLCR  F
Subjt:  GGDLPVRKYGELRRSDDRSTEEEMCSICLTEFARGDSVCELTNCCHVFHSDCIEKW-LEKNRFTCPLCRCFF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAGGTTTCGTTTCTCTCGATCCGCGGATGCGATTCGCTCTCTTTCTCCTTCACGCTTCCCTCTGGATCCCGCTCCTTCGTCTTAAGGACGCCATTCTCGCCATCGC
TACTGTTTTCCGCCTCCAATCTCTACCGGAAATGGACACCTCCGGCGGCGGCGGCGGAGATCTGCCGGTCAGGAAATACGGAGAGTTACGGAGGAGCGATGATCGATCCA
CGGAGGAGGAGATGTGTTCGATCTGTTTGACGGAATTCGCGAGAGGAGATTCCGTGTGCGAATTGACGAATTGTTGTCACGTTTTTCACTCCGATTGCATCGAGAAGTGG
TTGGAGAAGAATCGATTTACTTGTCCGCTCTGTAGGTGTTTCTTCAACATCGAGAATCCTCGCCATGAGAAGAAGCTCTTTCGATTCCTTGTTCCTGATGATAATCCTTC
TTGCCTCTACTATTTCTTGCAGTGA
mRNA sequenceShow/hide mRNA sequence
AGCAGAGCAATCAATGAATTAGTACTTATTCTTCTTCTTCAACTTTTCCCAAACCAAAACTGAGCTCCAATAATTTAATGGCGAAATCAACGATTTAATCCTCTTTGAAA
TCGCTCGATCTTAACCAATCATTCAATCACAGCACCACCGCCATGTTAGGTTTCGTTTCTCTCGATCCGCGGATGCGATTCGCTCTCTTTCTCCTTCACGCTTCCCTCTG
GATCCCGCTCCTTCGTCTTAAGGACGCCATTCTCGCCATCGCTACTGTTTTCCGCCTCCAATCTCTACCGGAAATGGACACCTCCGGCGGCGGCGGCGGAGATCTGCCGG
TCAGGAAATACGGAGAGTTACGGAGGAGCGATGATCGATCCACGGAGGAGGAGATGTGTTCGATCTGTTTGACGGAATTCGCGAGAGGAGATTCCGTGTGCGAATTGACG
AATTGTTGTCACGTTTTTCACTCCGATTGCATCGAGAAGTGGTTGGAGAAGAATCGATTTACTTGTCCGCTCTGTAGGTGTTTCTTCAACATCGAGAATCCTCGCCATGA
GAAGAAGCTCTTTCGATTCCTTGTTCCTGATGATAATCCTTCTTGCCTCTACTATTTCTTGCAGTGATTTTCGATTTCGATTTCGATTTCGTTTTGATTCTCTTTTCGAT
CGCTTTGGAAATTGGAAGCTGTTCTTGGATTTTTCCATGTATATTGTGCACAAATCTTTCTTCTCTGAATTTTCTGTAAATACAGCCATTTTCTTTTATGAGGAAATTGA
AATTGTTTCCTGCGA
Protein sequenceShow/hide protein sequence
MLGFVSLDPRMRFALFLLHASLWIPLLRLKDAILAIATVFRLQSLPEMDTSGGGGGDLPVRKYGELRRSDDRSTEEEMCSICLTEFARGDSVCELTNCCHVFHSDCIEKW
LEKNRFTCPLCRCFFNIENPRHEKKLFRFLVPDDNPSCLYYFLQ