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Sed0021323 (gene) of Chayote v1 genome

Gene IDSed0021323
OrganismSechium edule (Chayote v1)
Descriptiontranscription factor PRE6-like
Genome locationLG04:5588060..5589614
RNA-Seq ExpressionSed0021323
SyntenySed0021323
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004135185.1 transcription factor PRE6 [Cucumis sativus]4.7e-3491.58Show/hide
Query:  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLIM
        MS RSS SRRS   SRNISD+QIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSL+M
Subjt:  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLIM

XP_022151230.1 transcription factor PRE6-like [Momordica charantia]8.6e-3693.68Show/hide
Query:  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLIM
        MS+RSS SRRS  PSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLS+RLSELLASTDPESAQAAIIRSL+M
Subjt:  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLIM

XP_022945906.1 transcription factor PRE6-like [Cucurbita moschata]2.8e-3491.58Show/hide
Query:  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLIM
        MS+RSS SRRSS PS NISD+QIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREV DLSDRLSELL STDPESAQAAIIRSL+M
Subjt:  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLIM

XP_022968308.1 transcription factor PRE6-like [Cucurbita maxima]2.1e-3491.58Show/hide
Query:  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLIM
        MS+RSS SRRSS PS NISD+QIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREV DLSDRLSELL STDPESAQAAIIRSL+M
Subjt:  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLIM

XP_038893351.1 transcription factor PRE6-like [Benincasa hispida]1.5e-3593.68Show/hide
Query:  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLIM
        MS RSS SRRS  PSRNISDDQIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSL+M
Subjt:  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLIM

TrEMBL top hitse value%identityAlignment
A0A0A0KQJ7 Transcription regulator2.3e-3491.58Show/hide
Query:  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLIM
        MS RSS SRRS   SRNISD+QIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSL+M
Subjt:  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLIM

A0A1S3BFH5 transcription factor PRE6-like5.1e-3490.53Show/hide
Query:  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLIM
        MS RSS SRRS   SRNISD+QIADLISKLQQLIPEIRN RSSSRVSASKVLQETCNYIRSLQREVDDLSDRLS+LLASTDPESAQAAIIRSL+M
Subjt:  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLIM

A0A6J1DAM4 transcription factor PRE6-like4.2e-3693.68Show/hide
Query:  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLIM
        MS+RSS SRRS  PSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLS+RLSELLASTDPESAQAAIIRSL+M
Subjt:  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLIM

A0A6J1G268 transcription factor PRE6-like1.3e-3491.58Show/hide
Query:  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLIM
        MS+RSS SRRSS PS NISD+QIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREV DLSDRLSELL STDPESAQAAIIRSL+M
Subjt:  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLIM

A0A6J1HXN1 transcription factor PRE6-like1.0e-3491.58Show/hide
Query:  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLIM
        MS+RSS SRRSS PS NISD+QIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREV DLSDRLSELL STDPESAQAAIIRSL+M
Subjt:  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLIM

SwissProt top hitse value%identityAlignment
B8APB5 Transcription factor ILI63.9e-2367.37Show/hide
Query:  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLIM
        MS+R S SR+S   S  I+D+QI+DL+SKLQ L+PE R  RS+ RV +S+VLQETCNYIRSL +EVDDLS+RLSELLA++D  SAQAAIIRSL+M
Subjt:  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLIM

Q0DUR2 Transcription factor ILI63.9e-2367.37Show/hide
Query:  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLIM
        MS+R S SR+S   S  I+D+QI+DL+SKLQ L+PE R  RS+ RV +S+VLQETCNYIRSL +EVDDLS+RLSELLA++D  SAQAAIIRSL+M
Subjt:  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLIM

Q8GW32 Transcription factor PRE61.4e-2575.27Show/hide
Query:  STRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLI
        S RSS SR+S   S  ISDDQI+DL+SKLQ LIPE+R  R S +VSASKVLQETCNYIR+L REVDDLSDRLSELLASTD  SA+AAIIRSL+
Subjt:  STRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLI

Q9CA64 Transcription factor PRE32.3e-2368.09Show/hide
Query:  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLI
        MS R S SR+SS  SR IS+DQI DLI KLQQL+PE+R++R S +VSA++VLQ+TCNYIR+L REVDDLS+RLSELLA++D  +AQAA+IRSL+
Subjt:  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLI

Q9LXG5 Transcription factor PRE26.0e-2468.89Show/hide
Query:  SSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLI
        SS   R ++ S  ISDDQI DLISKL+Q IPEIR  R S+ VSASKVLQETCNYIR+L +E DDLSDRL++LL S DP S QAA+IRSLI
Subjt:  SSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLI

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.0e-2675.27Show/hide
Query:  STRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLI
        S RSS SR+S   S  ISDDQI+DL+SKLQ LIPE+R  R S +VSASKVLQETCNYIR+L REVDDLSDRLSELLASTD  SA+AAIIRSL+
Subjt:  STRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLI

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 11.6e-2468.09Show/hide
Query:  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLI
        MS R S SR+SS  SR IS+DQI DLI KLQQL+PE+R++R S +VSA++VLQ+TCNYIR+L REVDDLS+RLSELLA++D  +AQAA+IRSL+
Subjt:  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLI

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein1.8e-2365.26Show/hide
Query:  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLIM
        MS R   SR++S  SR ISDDQ+ DL+SKL+Q +PEI   R S +VSASKVLQETCNYIR L REVD+LSDRLS+LL S D +S +AA+IRSL+M
Subjt:  MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLIM

AT5G15160.1 BANQUO 24.3e-2568.89Show/hide
Query:  SSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLI
        SS   R ++ S  ISDDQI DLISKL+Q IPEIR  R S+ VSASKVLQETCNYIR+L +E DDLSDRL++LL S DP S QAA+IRSLI
Subjt:  SSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLI

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein3.4e-2259.34Show/hide
Query:  SSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLIM
        S+   R S+ +  ISD+Q+ DL+SKL+Q++PEI   R S + SASKVLQETCNYIR+L REVD+LS+RLS+LL S D +S +AA+IRSL+M
Subjt:  SSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLIM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTACCCGAAGCTCCCATTCTCGACGCTCGTCTGCTCCCTCGAGGAACATTTCTGACGACCAGATTGCTGATTTGATCTCCAAGTTACAGCAACTCATCCCTGAGAT
TCGTAATGCCCGTTCTTCCTCTAGGGTATCAGCTTCAAAAGTTTTACAAGAGACTTGCAACTACATAAGAAGCTTACAAAGAGAGGTGGACGACTTAAGCGACCGATTAT
CAGAGCTATTAGCATCAACGGACCCCGAAAGTGCTCAAGCTGCCATAATTAGAAGCTTAATTATGTAA
mRNA sequenceShow/hide mRNA sequence
ATTTTACTTTTCCATTCTTTTGGTTTTCAAGCCAACGAACAAACCGCAATCATGTCTACCCGAAGCTCCCATTCTCGACGCTCGTCTGCTCCCTCGAGGAACATTTCTGA
CGACCAGATTGCTGATTTGATCTCCAAGTTACAGCAACTCATCCCTGAGATTCGTAATGCCCGTTCTTCCTCTAGGGTATCAGCTTCAAAAGTTTTACAAGAGACTTGCA
ACTACATAAGAAGCTTACAAAGAGAGGTGGACGACTTAAGCGACCGATTATCAGAGCTATTAGCATCAACGGACCCCGAAAGTGCTCAAGCTGCCATAATTAGAAGCTTA
ATTATGTAATAATCATCGATTTTTCCAAGCCTCTCTCTCTCAAGCAAATCATTCTTCTTCTATAGAATTTGGCTTCATCAGCAACTCAAACCTTCACCTTGAATTAGCTA
CCATATAGATATATATATATTATAAAGTCGTATAAGAAAAGAGCTTGTCTAAGTTTCTTCTTCATTACTGTCATATATATATATATAAAACTTTAGTCGCTAATGGTGAG
AAGAAGTTATGTGCAC
Protein sequenceShow/hide protein sequence
MSTRSSHSRRSSAPSRNISDDQIADLISKLQQLIPEIRNARSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELLASTDPESAQAAIIRSLIM